HHsearch alignment for GI: 254780187 and conserved domain: CHL00113
>CHL00113 rps4 ribosomal protein S4; Reviewed.
Probab=100.00 E-value=0 Score=531.60 Aligned_cols=198 Identities=35% Similarity=0.524 Sum_probs=185.5
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 97644871235200588888888770001368998776544334135899999988485551565479999999875303
Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 (206)
Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~ 80 (206)
T Consensus 1 MaRy~GP~~K~~RRlG~l~g~~~k~~--kr~~~pGqhg~~--rK~S~Yg~qL~EKQKlr~~YG-v~EkQfr~y~~~A~r~ 75 (201)
T CHL00113 1 MSRYRGPRLKKIRRLGALPGLTSKRP--KRGSDLGNQSRS--GKKSQYRIRLEEKQKLRFNYG-LTERQLLKYVRIARKA 75 (201)
T ss_pred CCCCCCCHHHEECCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC
T ss_conf 98655767550215888856675443--689999878888--840689999999999999808-5499999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf 34430268999998888899862121247887887624978788889413534833884788611002269999877521
Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA 160 (206)
Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~ 160 (206)
T Consensus 76 ~G~Tg~~Ll~lLE~RLDnvVyRlGfA~Tr~~ARQlV~HgHi~VNgkkVnIPSy~vk~GDvI~v~~ks~~~~~v~~~~~~~ 155 (201)
T CHL00113 76 KGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPRDIITIKDKQKSRALIQNNLDSS 155 (201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCEEEECCEEECCCCEEEECCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 89689999999999999999870540588876105846629989989337875842799899753444458999999731
Q ss_pred -CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf -6899962788124318999967884211246753466316775049
Q gi|254780187|r 161 -ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206)
Q Consensus 161 -~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206)
T Consensus 156 ~~~~~p~wl~~d~~~~~g~v~~~P~r-~~--i~~~i~e~LIVE~YSr 199 (201)
T CHL00113 156 KLEELPNHLTFHKFQLKGLVNQIIDR-KW--VGLKINELLVVEYYSR 199 (201)
T ss_pred CCCCCCCCEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEEECC
T ss_conf 55799980186554588999606876-77--8977764579998067