HHsearch alignment for GI: 254780187 and conserved domain: CHL00113

>CHL00113 rps4 ribosomal protein S4; Reviewed.
Probab=100.00  E-value=0  Score=531.60  Aligned_cols=198  Identities=35%  Similarity=0.524  Sum_probs=185.5

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             97644871235200588888888770001368998776544334135899999988485551565479999999875303
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS   80 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~   80 (206)
T Consensus         1 MaRy~GP~~K~~RRlG~l~g~~~k~~--kr~~~pGqhg~~--rK~S~Yg~qL~EKQKlr~~YG-v~EkQfr~y~~~A~r~   75 (201)
T CHL00113          1 MSRYRGPRLKKIRRLGALPGLTSKRP--KRGSDLGNQSRS--GKKSQYRIRLEEKQKLRFNYG-LTERQLLKYVRIARKA   75 (201)
T ss_pred             CCCCCCCHHHEECCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC
T ss_conf             98655767550215888856675443--689999878888--840689999999999999808-5499999999999865


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf             34430268999998888899862121247887887624978788889413534833884788611002269999877521
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA  160 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~  160 (206)
T Consensus        76 ~G~Tg~~Ll~lLE~RLDnvVyRlGfA~Tr~~ARQlV~HgHi~VNgkkVnIPSy~vk~GDvI~v~~ks~~~~~v~~~~~~~  155 (201)
T CHL00113         76 KGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPRDIITIKDKQKSRALIQNNLDSS  155 (201)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCEEEECCEEECCCCEEEECCCEEEECCCCCCHHHHHHHHHHC
T ss_conf             89689999999999999999870540588876105846629989989337875842799899753444458999999731


Q ss_pred             -CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             -6899962788124318999967884211246753466316775049
Q gi|254780187|r  161 -ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       161 -~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
T Consensus       156 ~~~~~p~wl~~d~~~~~g~v~~~P~r-~~--i~~~i~e~LIVE~YSr  199 (201)
T CHL00113        156 KLEELPNHLTFHKFQLKGLVNQIIDR-KW--VGLKINELLVVEYYSR  199 (201)
T ss_pred             CCCCCCCCEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEEECC
T ss_conf             55799980186554588999606876-77--8977764579998067