HHsearch alignment for GI: 254780187 and conserved domain: TIGR00005
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases. In Escherichia coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917. RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homologue from E. coli outside this family, TruC (Q46918 from SWISSPROT), modifies uracil-65 in transfer RNAs to pseudouridine. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis.
Probab=95.82 E-value=0.02 Score=36.46 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEC-CEEEECCCEEECCCCEEE-ECCHHHHHHHHHHHHHHCCCCCCC--EE
Q ss_conf 98888899862121247887887624978788-889413534833884788-611002269999877521689996--27
Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN-GRSVNIGSYRCKEGDVIE-VKQKSKQLASVLEASQLAERDVPE--YI 168 (206)
Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vn-g~~v~~ps~~~k~gd~I~-~~~ksk~~~~i~~~~~~~~~~~P~--wL 168 (206)
T Consensus 5 g~Rld~~L~~~l~~~sr~~~~~~i~~G~V~vN~~~~~~~~~~~~~~g~~~~~v~~~~~~~-----~~~~~~~~~p~~l~l 79 (337)
T TIGR00005 5 GQRLDDFLASLLPDLSRSRIQKLIENGQVKVNKGKVTANPKLKIKDGDRITPVRVPEEQE-----ELEVPVQDIPADLKL 79 (337)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEECEECCCCCC-----CCCCCCCCCCCCCCC
T ss_conf 026999999983678888999998749689637642567430523874660100146433-----235766567342211
Q ss_pred EECCCCCEEEEEECCC
Q ss_conf 8812431899996788
Q gi|254780187|r 169 SVNHDNMVATFVRIPS 184 (206)
Q Consensus 169 evd~~~l~g~v~~~P~ 184 (206)
T Consensus 80 ~IlfEDe~i~vinKP~ 95 (337)
T TIGR00005 80 DILFEDEDILVINKPS 95 (337)
T ss_pred EEEEECCCEEEEECCC
T ss_conf 3787508389997898