HHsearch alignment for GI: 254780187 and conserved domain: TIGR03069
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=98.31 E-value=9.2e-07 Score=64.57 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf 98888899862121247887887624978788889413534833884788611002
Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206)
Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206)
T Consensus 183 SlRLDavvs-~~~~~SRska~~lI~~g~V~vN~~~v~~~s~~v~~gDiiSvRG~GR 237 (257)
T TIGR03069 183 SLRIDAIAS-AGFGLSRSKIVDQIKAGRLRLNWKTVTQPSRELKVGDRLQLRGKGR 237 (257)
T ss_pred CCCHHHHHH-HHHCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEECCCE
T ss_conf 213899999-8866579999999884968989999057875668999999906717