HHsearch alignment for GI: 254780187 and conserved domain: cd00165
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=99.13 E-value=6.1e-11 Score=91.65 Aligned_cols=56 Identities=50% Similarity=0.711 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHH
Q ss_conf 88888998621212478878876249787888894135348338847886110022
Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 (206)
Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~ 149 (206)
T Consensus 1 ~RLd~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~i~i~~~~~~ 56 (70)
T cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIE 56 (70)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCCCCC
T ss_conf 94889998748715899999999819389899995888889899999998787788