HHsearch alignment of GI: 254780187 and MMDB domain: 1c05_A_22-76

>1c05_A (A:22-76) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus}

Probab=99.84  E-value=2.9e-21  Score=158.23  Aligned_cols=55  Identities=42%  Similarity=0.682  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf             5479999999875303344302689999988888998621212478878876249
Q gi|254780187|r   65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR  119 (206)
Q Consensus        65 ~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg  119 (206)
                      |+||||++||++|.+++|+||++|+++||+||||+|||+|||+|+++|||+|+||
T Consensus         1 i~EkQf~~~~~~A~k~~g~tg~~ll~lLE~RLD~vvyR~gfa~S~~~ARQlV~HG   55 (55)
T 1c05_A            1 VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHG   55 (55)
T ss_dssp             CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf             6689999999999865898514289999987545411577437888899888735