HHsearch alignment of GI: 254780187 and MMDB domain: 1c05_A_77-159
>1c05_A (A:77-159) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus}
Probab=99.91 E-value=6e-25 Score=182.07 Aligned_cols=83 Identities=42% Similarity=0.759 Sum_probs=77.4
Q ss_pred CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 78788889413534833884788611002269999877521689996278812431899996788421124675346631
Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 (206)
Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~L 199 (206)
||+|||++||||||+|+|||+|++++++++...+..+.+ ..+.+|+||++|.++++|++++.|+|.+ +|+.+||+|
T Consensus 1 Hi~VNgkkVdIPSy~~k~gD~I~ik~k~~~~~~v~~~~~-~~~~~p~~l~~d~~~~~g~v~~~P~r~e---i~~~ine~L 76 (83)
T 1c05_A 1 HILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPERSE---LPAEINEAL 76 (83)
T ss_dssp CEEETTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCTTT---SCSSCCSHH
T ss_pred CEECCCEEEEECCEEECCCCEEEECCCCCHHHHHHHHHH-CCCCCCCEEEECCCCCEEEEEECCCHHH---CCCCCCCCE
T ss_conf 636043699843416217848750200004899999985-4167997228617677999996556787---898877357
Q ss_pred EEEEECC
Q ss_conf 6775049
Q gi|254780187|r 200 VVEFYSR 206 (206)
Q Consensus 200 VVEyYSR 206 (206)
|||||||
T Consensus 77 VVEyYSR 83 (83)
T 1c05_A 77 IVEFYSR 83 (83)
T ss_dssp HHHHHHC
T ss_pred EEEECCC
T ss_conf 9986479