HHsearch alignment of GI: 254780187 and MMDB domain: 1dm9_A_

>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}
Probab=98.83  E-value=3e-09  Score=80.24  Aligned_cols=54  Identities=26%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      .++|||.+|.++||+.|+.+|+++|.||+|.|||++++ ||+.+++||.|++...
T Consensus         7 ~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~   60 (133)
T 1dm9_A            7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQG   60 (133)
T ss_dssp             TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEET
T ss_pred             CCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEEC
T ss_conf             64629999987867168999999998691888999734-5856159998999879