HHsearch alignment of GI: 254780187 and MMDB domain: 1ksk_A_1-58

>1ksk_A (A:1-58) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}

Probab=98.96  E-value=4.9e-10  Score=85.37  Aligned_cols=53  Identities=17%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +.|||.+|.+++++ ||.+|+++|.||+|+|||++|+.|||.|++||+|++..+
T Consensus         3 ~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~i~g~   55 (58)
T 1ksk_A            3 HXRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN   55 (58)
T ss_dssp             CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred             CCHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCCEECCCCEEEEEEE
T ss_conf             40099999877896-899999999889299999994668858078676997210