HHsearch alignment of GI: 254780187 and MMDB domain: 1vio_A_1-57

>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}

Probab=99.02  E-value=2e-10  Score=87.86  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      |++|||.+|.++|++ |+.+|+++|.||+|.|||++++.|||.|++||.|+++.+
T Consensus         1 m~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~g~   54 (57)
T 1vio_A            1 MSLRLDKFIAENVGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE   54 (57)
T ss_dssp             -CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred             CCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEEEC
T ss_conf             955899999987785-899999999879789999991548958688787876203