HHsearch alignment of GI: 254780187 and MMDB domain: 2cqj_A_

>2cqj_A (A:) BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72  E-value=2.7e-19  Score=145.48  Aligned_cols=64  Identities=22%  Similarity=0.228  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHHHHH
Q ss_conf             6899999888889986212124788788762497878888941353483388--478861100226
Q gi|254780187|r   87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKSKQL  150 (206)
Q Consensus        87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ksk~~  150 (206)
                      |++.+||+|||++|||+|||+|+.+|||+|.||||+|||++|++|||+|++|  |.|+++++++..
T Consensus         1 ~~~~~lerRLd~~l~~~g~a~s~~~Ar~lI~~G~V~Vng~~v~~Ps~~v~~~~~d~I~~~~~~k~~   66 (71)
T 2cqj_A            1 GSSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS   66 (71)
T ss_dssp             CCSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC
T ss_pred             CCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCEEEECCEEECCCCEEECCCCCCEEEEECCCCCC
T ss_conf             910344412689999805527899999999849899899995569858358998869984688678