HHsearch alignment of GI: 254780187 and MMDB domain: 3i1m_D_97-190
>3i1m_D (D:97-190) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ...
Probab=99.94 E-value=1.8e-27 Score=198.52 Aligned_cols=93 Identities=41% Similarity=0.672 Sum_probs=87.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCCCEEEECCC
Q ss_conf 888899862121247887887624978788889413534833884788611002269999877521-6899962788124
Q gi|254780187|r 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 (206)
Q Consensus 95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P~wLevd~~ 173 (206)
|||++|||+|||+|+.+|||||+||||+|||++||+|||.|++||+|++++++++...+..+.+.. .+.+|+||++|++
T Consensus 1 RLD~~l~r~gfa~S~~~ARqlI~hghv~VNg~~v~~ps~~vk~gD~i~i~~~~~~~~~i~~~~~~~~~~~~p~~l~~~~~ 80 (94)
T 3i1m_D 1 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 80 (94)
T ss_dssp STTHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCCCCTTCCEEECSSSCSCHHHHHHHHHHHTSCCCSSEECCSS
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCEECCCEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 88888660312540999999998503760887997631770589778862323258999999985063789885897475
Q ss_pred CCEEEEEECCCCCC
Q ss_conf 31899996788421
Q gi|254780187|r 174 NMVATFVRIPSSLK 187 (206)
Q Consensus 174 ~l~g~v~~~P~r~e 187 (206)
.++|+|++.|+++|
T Consensus 81 ~~~~~v~~~P~r~e 94 (94)
T 3i1m_D 81 KMEGTFKRKPERSD 94 (94)
T ss_dssp SCEEEECSCCCSTT
T ss_pred CCEEEEEECCCHHH
T ss_conf 57899994538898