Query         gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 206
No_of_seqs    159 out of 1658
Neff          5.4 
Searched_HMMs 33803
Date          Mon May 23 08:45:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780187.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bbn_D Ribosomal protein S4;  100.0 4.1E-39 1.2E-43  274.0   3.7  117   87-206     1-118 (120)
  2 >2vqe_D 30S ribosomal protein  100.0 6.5E-34 1.9E-38  240.3   7.1   94    1-95      1-100 (115)
  3 >3i1m_D 30S ribosomal protein  100.0 1.3E-32 3.7E-37  231.9   7.2   94    1-96      1-98  (112)
  4 >3i1m_D 30S ribosomal protein   99.9 1.8E-27 5.2E-32  198.5   5.6   93   95-187     1-94  (94)
  5 >2vqe_D 30S ribosomal protein   99.9 7.9E-25 2.3E-29  181.3   8.0   93   95-187     1-94  (94)
  6 >1s1h_D 40S ribosomal protein   99.9 6.9E-27 2.1E-31  194.7  -2.8   92   87-178     2-97  (99)
  7 >1c05_A Ribosomal protein S4 d  99.9   6E-25 1.8E-29  182.1   5.0   83  120-206     1-83  (83)
  8 >1c05_A Ribosomal protein S4 d  99.8 2.9E-21 8.5E-26  158.2   5.9   55   65-119     1-55  (55)
  9 >2cqj_A BRMS2, U3 small nucleo  99.7 2.7E-19 7.8E-24  145.5  -1.1   64   87-150     1-66  (71)
 10 >3hp7_A Hemolysin, putative; s  99.4 4.4E-14 1.3E-18  111.6   1.7   57   92-148     5-63  (65)
 11 >1h3f_A Tyrosyl-tRNA synthetas  99.3 1.6E-12 4.7E-17  101.5   2.5   66   85-150    11-76  (83)
 12 >1p9k_A ORF, hypothetical prot  99.1 1.5E-12 4.5E-17  101.6  -4.1   71   77-147     4-74  (79)
 13 >1vio_A Ribosomal small subuni  99.0   2E-10   6E-15   87.9   4.1   54   92-146     1-54  (57)
 14 >1ksk_A Ribosomal small subuni  99.0 4.9E-10 1.4E-14   85.4   4.1   53   93-146     3-55  (58)
 15 >1dm9_A Hypothetical 15.5 KD p  98.8   3E-09   9E-14   80.2   4.2   54   92-146     7-60  (133)
 16 >2k6p_A Uncharacterized protei  98.7   3E-09 8.8E-14   80.3   0.2   54   94-148     1-54  (92)
 17 >3dh3_A Ribosomal large subuni  98.3 5.1E-07 1.5E-11   65.8   4.6   53   93-147     6-58  (63)
 18 >1jil_A Tyrrs, tyrosyl-tRNA sy  97.6 3.6E-05 1.1E-09   53.8   3.1   95   48-142    48-155 (174)
 19 >2jan_A Tyrosyl-tRNA synthetas  97.6 5.9E-05 1.7E-09   52.4   3.4   49   94-142    12-60  (88)
 20 >2ts1_A Tyrosyl-tRNA synthetas  96.9 0.00018 5.2E-09   49.3   0.0   94   48-141    48-154 (174)
 21 >3kbg_A 30S ribosomal protein   96.8  0.0015 4.5E-08   43.2   4.5   46  102-147    17-62  (81)
 22 >1v9f_A Ribosomal large subuni  95.5  0.0026 7.6E-08   41.8   0.0   55   91-145    14-68  (325)
 23 >1v8c_A MOAD related protein;   83.7    0.54 1.6E-05   26.7   1.8   61   79-145    19-82  (84)
 24 >2vqe_D 30S ribosomal protein   83.6    0.11 3.3E-06   31.1  -1.8   16  191-206   100-115 (115)
 25 >2olw_A Ribosomal large subuni  78.3    0.51 1.5E-05   26.9   0.1   37  109-145     2-38  (119)
 26 >3i1m_D 30S ribosomal protein   77.4    0.34   1E-05   28.1  -1.1   16  191-206    97-112 (112)
 27 >1wv3_A Similar to DNA segrega  74.7     3.7 0.00011   21.3   3.7   29  117-145    53-81  (158)
 28 >2jqj_A DNA damage response pr  74.5     3.3 9.8E-05   21.6   3.4   29  118-146    86-114 (151)
 29 >3ixz_A Potassium-transporting  67.0     2.9 8.5E-05   22.0   1.7   31  118-148    10-40  (104)
 30 >2g1e_A Hypothetical protein T  63.8     2.3 6.7E-05   22.7   0.7   60   81-145    23-85  (90)
 31 >2zxe_A Na, K-ATPase alpha sub  62.5       5 0.00015   20.5   2.2   52  118-178    89-142 (184)
 32 >1vfs_A Alanine racemase; TIM-  62.2     6.8  0.0002   19.6   2.9   35  113-147    72-119 (163)
 33 >3fm8_A Kinesin-like protein K  59.4      12 0.00036   17.9   3.8   28  117-145    88-115 (124)
 34 >2hc8_A PACS, cation-transport  56.4     7.5 0.00022   19.3   2.3   32  117-148    12-43  (113)
 35 >3huf_A DNA repair and telomer  56.2      11 0.00031   18.4   3.0   29  117-145    75-104 (115)
 36 >2qjl_A URM1, ubiquitin-relate  55.1     9.2 0.00027   18.7   2.6   62   81-145    30-94  (99)
 37 >2cu3_A Unknown function prote  54.4      12 0.00034   18.1   3.0   25  120-144    31-58  (64)
 38 >3dwg_C 9.5 kDa culture filtra  54.0     9.8 0.00029   18.6   2.6   63   80-145    23-88  (93)
 39 >2k5p_A THis protein, thiamine  52.4      10  0.0003   18.5   2.4   25  120-144    36-63  (78)
 40 >1tyg_B YJBS; alpha beta barre  52.0      13 0.00038   17.8   2.9   23  121-143    55-80  (87)
 41 >2kl0_A Putative thiamin biosy  50.8      10  0.0003   18.5   2.2   25  120-144    32-59  (73)
 42 >1rws_A Hypothetical protein P  50.2     7.2 0.00021   19.4   1.4   25  120-145    48-72  (77)
 43 >2ff4_A Probable regulatory pr  49.7      14 0.00042   17.5   2.8   27  118-145    58-84  (99)
 44 >1r21_A Antigen KI-67; beta sa  49.1     7.7 0.00023   19.2   1.4   27  122-148    17-43  (68)
 45 >1wgk_A Riken cDNA 2900073H19   48.9     2.4   7E-05   22.6  -1.3   59   81-145    41-103 (114)
 46 >1wln_A Afadin; beta sandwich,  48.9      14 0.00042   17.5   2.7   26  119-145    80-105 (120)
 47 >3b8c_A ATPase 2, plasma membr  48.8     1.9 5.6E-05   23.2  -1.8   28  121-148     2-29  (93)
 48 >3kt9_A Aprataxin; FHA domain,  48.6      16 0.00048   17.1   3.0   28  118-145    63-91  (102)
 49 >2g1l_A Kinesin-like protein K  48.0      20 0.00058   16.6   3.6   26  118-144    70-95  (104)
 50 >2pie_A E3 ubiquitin-protein l  48.0      19 0.00057   16.7   3.3   27  119-145    75-102 (138)
 51 >1mhs_A Proton pump, plasma me  47.5     8.2 0.00024   19.0   1.3   30  119-148     5-34  (98)
 52 >2eh0_A KLP, kinesin-like prot  47.2      16 0.00048   17.2   2.8   31  117-148    78-108 (130)
 53 >1gxc_A CHK2, CDS1, serine/thr  46.1      20  0.0006   16.5   3.1   28  118-145   102-130 (149)
 54 >1wpg_A Sarcoplasmic/endoplasm  46.0     7.6 0.00022   19.3   0.9   60  113-178    23-86  (130)
 55 >3i6u_A CDS1, serine/threonine  45.6      20 0.00059   16.6   3.0   28  118-145    82-110 (125)
 56 >2k9x_A Tburm1, uncharacterize  45.1     7.7 0.00023   19.2   0.9   59   81-145    33-97  (110)
 57 >2dy3_A Alanine racemase; alph  44.7      19 0.00057   16.7   2.9   33  113-145    65-112 (145)
 58 >1dmz_A Protein (protein kinas  43.0      14  0.0004   17.6   1.9   30  118-147    82-112 (158)
 59 >3elv_A PRE-mRNA leakage prote  42.9      20 0.00059   16.6   2.7   29  117-145   162-191 (205)
 60 >1g3g_A Protien kinase SPK1; F  42.5      24  0.0007   16.1   3.4   27  119-145    80-107 (137)
 61 >1fm0_D Molybdopterin converti  42.3      24 0.00071   16.1   4.4   53   79-145    22-76  (81)
 62 >1vjk_A Molybdopterin converti  42.0      12 0.00034   18.1   1.4   59   80-145    34-93  (98)
 63 >1yj5_C 5' polynucleotide kina  41.9      20  0.0006   16.5   2.6   28  118-145    69-97  (143)
 64 >3gqs_A Adenylate cyclase-like  40.3      19 0.00057   16.6   2.3   24  120-144    70-93  (106)
 65 >2csw_A Ubiquitin ligase prote  40.0      18 0.00054   16.8   2.1   26  120-145    84-110 (145)
 66 >2pmv_A Gastric intrinsic fact  39.9      20  0.0006   16.5   2.4   60   85-144    49-122 (126)
 67 >1f0z_A THis protein; ubiquiti  39.6      18 0.00053   16.9   2.0   24  120-143    33-59  (66)
 68 >1g6g_A Protein kinase RAD53;   37.8      28 0.00083   15.6   3.1   32  115-146    75-107 (127)
 69 >1qu5_A Protein kinase SPK1; F  36.3      20 0.00058   16.6   1.8   28  119-146   107-135 (182)
 70 >2jpe_A Nuclear inhibitor of p  35.8      15 0.00045   17.3   1.2   24  121-144   102-126 (140)
 71 >3els_A PRE-mRNA leakage prote  35.8      28 0.00082   15.6   2.5   28  118-145   116-144 (158)
 72 >1rcq_A Catabolic alanine race  32.2      27 0.00079   15.7   2.0   36  113-148    67-116 (146)
 73 >2q5w_D Molybdopterin converti  32.2      34   0.001   15.0   3.4   50   80-145    23-72  (77)
 74 >2kfu_A RV1827 PThr 22; FHA do  32.1      32 0.00094   15.2   2.3   25  119-145   117-141 (162)
 75 >2z0t_A Putative uncharacteriz  31.8      27  0.0008   15.7   1.9   33  114-146    13-45  (109)
 76 >2rjg_A Alanine racemase; alph  30.3      32 0.00093   15.3   2.1   35  113-147    88-136 (167)
 77 >1l7l_A PA-I galactophilic lec  29.3      12 0.00037   17.9  -0.2   28  119-146     4-31  (121)
 78 >3jyv_D 40S ribosomal protein   28.8      26 0.00078   15.8   1.5   15   87-101    95-109 (109)
 79 >1xfc_A Alanine racemase; alph  28.7      39  0.0012   14.6   2.8   33  113-145    74-121 (162)
 80 >1mzk_A Kinase associated prot  28.4      40  0.0012   14.6   2.5   28  118-145    75-111 (139)
 81 >3kw3_A Alanine racemase; niai  27.3      41  0.0012   14.5   3.1   37  113-149    82-133 (161)
 82 >3fse_A Two-domain protein con  26.6      43  0.0013   14.4   4.4   42   48-98     18-59  (159)
 83 >1wxq_A GTP-binding protein; s  26.4      16 0.00047   17.2  -0.0   27  120-147    54-80  (81)
 84 >1uht_A Expressed protein; FHA  24.6      37  0.0011   14.8   1.6   23  121-143    78-101 (118)
 85 >2kij_A Copper-transporting AT  23.9      34   0.001   15.0   1.3   24  125-148    32-55  (124)
 86 >1hcx_A Major autolysin; choli  23.5      39  0.0012   14.6   1.5   24  121-144    19-42  (42)
 87 >2brf_A Bifunctional polynucle  23.4      49  0.0014   14.0   2.1   26  120-145    71-97  (110)
 88 >3hur_A Alanine racemase; stru  23.3      49  0.0015   14.0   2.3   29  116-144    75-115 (152)
 89 >3cuz_A MSA, malate synthase A  23.2      24 0.00071   16.0   0.4   27  107-133    54-80  (134)
 90 >1qd7_I S17 ribosomal protein;  22.9      34   0.001   15.0   1.1   18  128-145    43-60  (89)
 91 >1y43_B Aspergillopepsin II he  22.5      41  0.0012   14.5   1.5   18  127-144    49-66  (118)
 92 >2bb6_A TCII, TC II, transcoba  21.9      45  0.0013   14.2   1.6   39  105-143    59-101 (106)
 93 >2eki_A DRG 1, developmentally  20.9      46  0.0014   14.2   1.5   15  130-144    71-85  (93)
 94 >2wa2_A Non-structural protein  20.8      55  0.0016   13.7   2.2   35   94-128    15-49  (276)
 95 >1rvx_A Hemagglutinin; viral p  20.7      44  0.0013   14.3   1.3   23  122-144   131-155 (174)

No 1  
>>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:82-201)
Probab=100.00  E-value=4.1e-39  Score=274.00  Aligned_cols=117  Identities=40%  Similarity=0.614  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf             68999998888899862121247887887624978788889413534833884788611002269999877521-68999
Q gi|254780187|r   87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVP  165 (206)
Q Consensus        87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P  165 (206)
                      .|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++++...+..+.+.. ...+|
T Consensus         1 ~ll~~LE~RLD~~l~R~gfa~s~~~ARqlI~hghV~VNg~~v~~ps~~v~~gD~i~~~~~~~~~~~~~~~~~~~~~~~~p   80 (120)
T 3bbn_D            1 VLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELP   80 (120)
T ss_dssp             TTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSSTTTSCCC
T ss_pred             HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCEECCCEEECCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             79998987531035505733576888899987513615489816572546166300100131499999999852658999


Q ss_pred             CEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             62788124318999967884211246753466316775049
Q gi|254780187|r  166 EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       166 ~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                      +||++|+++++|++++.|++.+   +|..+||+||||||||
T Consensus        81 ~~Levd~~~~~~~~~~~P~r~e---i~~~i~e~lVvE~Ysr  118 (120)
T 3bbn_D           81 KHLTLNPFPYKGLVNQIIDSKW---VGLKINELLVVEYYSR  118 (120)
T ss_dssp             TTEEEETTTTEEEECSCCCGGG---CCCSCCHHHHTTTSCC
T ss_pred             CEEEEECCCCEEEEECCCCHHH---CCCCCCCCEEEEECCC
T ss_conf             8699874448899973777300---8999874479997677


No 2  
>>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:1-99,D:194-209)
Probab=100.00  E-value=6.5e-34  Score=240.26  Aligned_cols=94  Identities=38%  Similarity=0.705  Sum_probs=89.8

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCC------CCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             97644871235200588888888------770001368998776544334135899999988485551565479999999
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF   74 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~~------k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~   74 (206)
                      ||||+||++|+|||||++||++.      |+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++||
T Consensus         1 MaRy~GPr~Ki~RRlG~~l~~~~k~~~~~K~~~~rr~~~PGqHG~~~r~K~SeYg~qL~EKQKlk~~YG-i~EkQfr~y~   79 (115)
T 2vqe_D            1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF   79 (115)
T ss_dssp             -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHH
T ss_conf             986557686763017998677785667877510147799986767678764378999999999999638-6848999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH
Q ss_conf             875303344302689999988
Q gi|254780187|r   75 KEADRSRGDTSHNLISFLESR   95 (206)
Q Consensus        75 ~~A~~~~g~t~~~ll~~LE~R   95 (206)
                      .+|.+++|+||+|||++||+-
T Consensus        80 ~~A~k~kG~TGenLL~LLES~  100 (115)
T 2vqe_D           80 EEASKKKGVTGSVFLGLLESL  100 (115)
T ss_dssp             HHHHHSSSCHHHHHHHHHHTC
T ss_pred             HHHHHCCCCCHHHHHHHHHHC
T ss_conf             999853798358899999997


No 3  
>>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:1-96,D:191-206)
Probab=99.97  E-value=1.3e-32  Score=231.91  Aligned_cols=94  Identities=37%  Similarity=0.641  Sum_probs=87.8

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCC----HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             97644871235200588888888770----00136899877654433413589999998848555156547999999987
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGRPKSP----VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE   76 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~~k~~----~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~   76 (206)
                      ||||+||++|+|||||++||+++|++    ..+++++|||||..+ +|+|+||+||+||||+||+|| ++|+||++||.+
T Consensus         1 MaRy~GPk~Ki~RRlG~~l~~~~K~~~~~~~~~r~~~pgqhg~~r-kK~SeYg~qL~EKQKlk~~YG-i~EkQfrryf~~   78 (112)
T 3i1m_D            1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKE   78 (112)
T ss_dssp             -CCCCSCHHHHHHHTTSCCSSSCSSSCSSCSSCCSSCSSSSTTSC-CCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_conf             996557675631027988666788865674334678999888878-761579999999998998707-873889999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHH
Q ss_conf             53033443026899999888
Q gi|254780187|r   77 ADRSRGDTSHNLISFLESRL   96 (206)
Q Consensus        77 A~~~~g~t~~~ll~~LE~RL   96 (206)
                      |.+++|+||+|||++||+-.
T Consensus        79 A~k~kG~TG~nLL~lLEs~~   98 (112)
T 3i1m_D           79 AARLKGNTGENLLALLEGLS   98 (112)
T ss_dssp             HHHSSSCHHHHHHHHHHHCC
T ss_pred             HHHCCCCHHHHHHHHHHHCC
T ss_conf             98669967999999999989


No 4  
>>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:97-190)
Probab=99.94  E-value=1.8e-27  Score=198.52  Aligned_cols=93  Identities=41%  Similarity=0.672  Sum_probs=87.7

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCCCEEEECCC
Q ss_conf             888899862121247887887624978788889413534833884788611002269999877521-6899962788124
Q gi|254780187|r   95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD  173 (206)
Q Consensus        95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P~wLevd~~  173 (206)
                      |||++|||+|||+|+.+|||||+||||+|||++||+|||.|++||+|++++++++...+..+.+.. .+.+|+||++|++
T Consensus         1 RLD~~l~r~gfa~S~~~ARqlI~hghv~VNg~~v~~ps~~vk~gD~i~i~~~~~~~~~i~~~~~~~~~~~~p~~l~~~~~   80 (94)
T 3i1m_D            1 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG   80 (94)
T ss_dssp             STTHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCCCCTTCCEEECSSSCSCHHHHHHHHHHHTSCCCSSEECCSS
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCEECCCEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf             88888660312540999999998503760887997631770589778862323258999999985063789885897475


Q ss_pred             CCEEEEEECCCCCC
Q ss_conf             31899996788421
Q gi|254780187|r  174 NMVATFVRIPSSLK  187 (206)
Q Consensus       174 ~l~g~v~~~P~r~e  187 (206)
                      .++|+|++.|+++|
T Consensus        81 ~~~~~v~~~P~r~e   94 (94)
T 3i1m_D           81 KMEGTFKRKPERSD   94 (94)
T ss_dssp             SCEEEECSCCCSTT
T ss_pred             CCEEEEEECCCHHH
T ss_conf             57899994538898


No 5  
>>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:100-193)
Probab=99.91  E-value=7.9e-25  Score=181.32  Aligned_cols=93  Identities=38%  Similarity=0.630  Sum_probs=86.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCCCEEEECCC
Q ss_conf             888899862121247887887624978788889413534833884788611002269999877521-6899962788124
Q gi|254780187|r   95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD  173 (206)
Q Consensus        95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P~wLevd~~  173 (206)
                      |||++|||+|||+|+++|||+|+||||+|||++|++|||.|++||+|++++.+.....+..+.+.. ...+|+||++|++
T Consensus         1 RLD~~l~r~~~~~Tr~~ArqlI~hg~V~VNg~~v~~ps~~v~~gD~I~i~~~~~~~~~~~~~~~~~~~~~~p~~le~~~~   80 (94)
T 2vqe_D            1 RLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE   80 (94)
T ss_dssp             BHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHHHHHHHTTTCCCCTTCCEETT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCEECCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             99999985352002898889987068450887997536785288600121101048999999976132789888573050


Q ss_pred             CCEEEEEECCCCCC
Q ss_conf             31899996788421
Q gi|254780187|r  174 NMVATFVRIPSSLK  187 (206)
Q Consensus       174 ~l~g~v~~~P~r~e  187 (206)
                      .++|++++.|+++|
T Consensus        81 ~~~~~~~~~p~r~e   94 (94)
T 2vqe_D           81 GMKGKFLRLPDRED   94 (94)
T ss_dssp             TTEEECCSCCCGGG
T ss_pred             CCEEEEEECCCHHH
T ss_conf             18899994437888


No 6  
>>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (D:81-179)
Probab=99.91  E-value=6.9e-27  Score=194.66  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC----CC
Q ss_conf             68999998888899862121247887887624978788889413534833884788611002269999877521----68
Q gi|254780187|r   87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA----ER  162 (206)
Q Consensus        87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~----~~  162 (206)
                      +|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++.+...+....+..    ..
T Consensus         2 n~~~~LErRLD~il~R~gfa~s~~~ARqlI~HghI~VNg~~v~~Ps~~vk~gd~i~i~~~~~s~~~~~~~~~~~~~~~~~   81 (99)
T 1s1h_D            2 KVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAAR   81 (99)
T ss_dssp             SSSSSGGGBHHHHHHHHTSSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTTEECCBCSSCCCTTTTTTTCCCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCHHHHCCCC
T ss_conf             58888875078899981565889999999873772589999876246840587560556068988899975044431122


Q ss_pred             CCCCEEEECCCCCEEE
Q ss_conf             9996278812431899
Q gi|254780187|r  163 DVPEYISVNHDNMVAT  178 (206)
Q Consensus       163 ~~P~wLevd~~~l~g~  178 (206)
                      ..|+|+++++..+.++
T Consensus        82 ~~~~~l~~~~~~~~~~   97 (99)
T 1s1h_D           82 KAEASGEAADEADEAD   97 (99)
T ss_dssp             TTTTEEEECSCCCTTT
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             4334566554433457


No 7  
>>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159)
Probab=99.91  E-value=6e-25  Score=182.07  Aligned_cols=83  Identities=42%  Similarity=0.759  Sum_probs=77.4

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf             78788889413534833884788611002269999877521689996278812431899996788421124675346631
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL  199 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~L  199 (206)
                      ||+|||++||||||+|+|||+|++++++++...+..+.+ ..+.+|+||++|.++++|++++.|+|.+   +|+.+||+|
T Consensus         1 Hi~VNgkkVdIPSy~~k~gD~I~ik~k~~~~~~v~~~~~-~~~~~p~~l~~d~~~~~g~v~~~P~r~e---i~~~ine~L   76 (83)
T 1c05_A            1 HILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPERSE---LPAEINEAL   76 (83)
T ss_dssp             CEEETTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCTTT---SCSSCCSHH
T ss_pred             CEECCCEEEEECCEEECCCCEEEECCCCCHHHHHHHHHH-CCCCCCCEEEECCCCCEEEEEECCCHHH---CCCCCCCCE
T ss_conf             636043699843416217848750200004899999985-4167997228617677999996556787---898877357


Q ss_pred             EEEEECC
Q ss_conf             6775049
Q gi|254780187|r  200 VVEFYSR  206 (206)
Q Consensus       200 VVEyYSR  206 (206)
                      |||||||
T Consensus        77 VVEyYSR   83 (83)
T 1c05_A           77 IVEFYSR   83 (83)
T ss_dssp             HHHHHHC
T ss_pred             EEEECCC
T ss_conf             9986479


No 8  
>>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:22-76)
Probab=99.84  E-value=2.9e-21  Score=158.23  Aligned_cols=55  Identities=42%  Similarity=0.682  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf             5479999999875303344302689999988888998621212478878876249
Q gi|254780187|r   65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR  119 (206)
Q Consensus        65 ~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg  119 (206)
                      |+||||++||++|.+++|+||++|+++||+||||+|||+|||+|+++|||+|+||
T Consensus         1 i~EkQf~~~~~~A~k~~g~tg~~ll~lLE~RLD~vvyR~gfa~S~~~ARQlV~HG   55 (55)
T 1c05_A            1 VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHG   55 (55)
T ss_dssp             CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf             6689999999999865898514289999987545411577437888899888735


No 9  
>>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.72  E-value=2.7e-19  Score=145.48  Aligned_cols=64  Identities=22%  Similarity=0.228  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHHHHH
Q ss_conf             6899999888889986212124788788762497878888941353483388--478861100226
Q gi|254780187|r   87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKSKQL  150 (206)
Q Consensus        87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ksk~~  150 (206)
                      |++.+||+|||++|||+|||+|+.+|||+|.||||+|||++|++|||+|++|  |.|+++++++..
T Consensus         1 ~~~~~lerRLd~~l~~~g~a~s~~~Ar~lI~~G~V~Vng~~v~~Ps~~v~~~~~d~I~~~~~~k~~   66 (71)
T 2cqj_A            1 GSSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS   66 (71)
T ss_dssp             CCSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC
T ss_pred             CCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCEEEECCEEECCCCEEECCCCCCEEEEECCCCCC
T ss_conf             910344412689999805527899999999849899899995569858358998869984688678


No 10 
>>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} (A:1-65)
Probab=99.41  E-value=4.4e-14  Score=111.59  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCE--EECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             998888899862121247887887624978--788889413534833884788611002
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i--~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      .|+|||.+|+++|||.|+.+|+|+|.||||  .|||++|++|||.|++||.|+++++..
T Consensus         5 ~~~RLD~~L~~~g~~~Sr~~A~~lI~~G~V~~~VNg~~v~kp~~~v~~~d~i~v~~~~~   63 (65)
T 3hp7_A            5 PKERVDVLAYKQGLFETREQAKRGVXAGLVVNVINGERYDKPGEKIDDGTELKLKGEKL   63 (65)
T ss_dssp             CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTCCC
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCEEEEECCCC
T ss_conf             08899999998758124999999998599423209989568867879999899807776


No 11 
>>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:350-432)
Probab=99.26  E-value=1.6e-12  Score=101.53  Aligned_cols=66  Identities=9%  Similarity=0.108  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHH
Q ss_conf             026899999888889986212124788788762497878888941353483388478861100226
Q gi|254780187|r   85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL  150 (206)
Q Consensus        85 ~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~  150 (206)
                      +...+..+|+|||.+++++|||+|+.+|||+|.||+|.|||++|+.|+|.|.+||.|.++...|+.
T Consensus        11 ~~~~~~~~~~rl~~~l~~~gl~~S~~~ARrlI~~G~V~vN~~~v~~~~~~v~~~d~i~i~~GKk~~   76 (83)
T 1h3f_A           11 PASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRF   76 (83)
T ss_dssp             CGGGCBTTEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETTTEE
T ss_pred             CHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCCE
T ss_conf             387832586349999998498677899999998599898999824877021589808998458758


No 12 
>>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} (A:)
Probab=99.10  E-value=1.5e-12  Score=101.62  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=63.7

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             53033443026899999888889986212124788788762497878888941353483388478861100
Q gi|254780187|r   77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus        77 A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
                      +.++...+........+.|||.+|.++|++.|+.+|+++|.||+|.|||++++.|||.|++||+|++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~RLd~~L~~~~~~~SR~~a~~~I~~G~V~VNg~~v~~~~~~v~~gd~I~i~~~~   74 (79)
T 1p9k_A            4 IHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS   74 (79)
T ss_dssp             CCSSCCCCEEECCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEE
T ss_pred             HHCCCCCCEEECCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCEE
T ss_conf             00014771386499971979999987788368999999998499798999927788798999999999999


No 13 
>>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} (A:1-57)
Probab=99.02  E-value=2e-10  Score=87.86  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      |++|||.+|.++|++ |+.+|+++|.||+|.|||++++.|||.|++||.|+++.+
T Consensus         1 m~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~g~   54 (57)
T 1vio_A            1 MSLRLDKFIAENVGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE   54 (57)
T ss_dssp             -CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred             CCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEEEC
T ss_conf             955899999987785-899999999879789999991548958688787876203


No 14 
>>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} (A:1-58)
Probab=98.96  E-value=4.9e-10  Score=85.37  Aligned_cols=53  Identities=17%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +.|||.+|.+++++ ||.+|+++|.||+|+|||++|+.|||.|++||+|++..+
T Consensus         3 ~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~i~g~   55 (58)
T 1ksk_A            3 HXRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN   55 (58)
T ss_dssp             CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred             CCHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCCEECCCCEEEEEEE
T ss_conf             40099999877896-899999999889299999994668858078676997210


No 15 
>>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} (A:)
Probab=98.83  E-value=3e-09  Score=80.24  Aligned_cols=54  Identities=26%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      .++|||.+|.++||+.|+.+|+++|.||+|.|||++++ ||+.+++||.|++...
T Consensus         7 ~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~   60 (133)
T 1dm9_A            7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQG   60 (133)
T ss_dssp             TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEET
T ss_pred             CCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEEC
T ss_conf             64629999987867168999999998691888999734-5856159998999879


No 16 
>>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} (A:)
Probab=98.67  E-value=3e-09  Score=80.28  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             8888899862121247887887624978788889413534833884788611002
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      ||||..+.+.+++.|+.+|+|+|.||+|.|||+++. ||+.|++||+|++.....
T Consensus         1 mRLD~~L~~~~~~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~   54 (92)
T 2k6p_A            1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKG   54 (92)
T ss_dssp             CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSC
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCC
T ss_conf             967899987277159999999998997998989986-624718999999984896


No 17 
>>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} (A:1-63)
Probab=98.34  E-value=5.1e-07  Score=65.78  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             9888889986212124788788762497878888941353483388478861100
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
                      .+|||.+|.++|++ |+.+|+++|.+|+|.|||+.|. ||+.|.+||.|++....
T Consensus         6 ~~RLDk~La~~~~~-SR~~~~~li~~G~V~Vng~~vk-~~~~v~~~d~I~v~~~~   58 (63)
T 3dh3_A            6 SVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQL   58 (63)
T ss_dssp             CEEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTEE
T ss_pred             CCCHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCEE
T ss_conf             70499999877885-1999999998793898999947-88896999989999999


No 18 
>>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} (A:247-420)
Probab=97.63  E-value=3.6e-05  Score=53.82  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCHHH-----------HHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             899999988485551565479999999875303344--30268-----------99999888889986212124788788
Q gi|254780187|r   48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD--TSHNL-----------ISFLESRLDTIVYRAKFVPTIFAARQ  114 (206)
Q Consensus        48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~--t~~~l-----------l~~LE~RLD~~v~r~g~a~t~~~Arq  114 (206)
                      .+....+..=.+.+||.=.-.+-...+.........  +...+           +..-+.++..++.++|+++|..+||.
T Consensus        48 ~aqk~LA~eit~~vHG~~~a~~A~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~~l~~SkseaRr  127 (174)
T 1jil_A           48 EAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQARE  127 (174)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf             66899999999971576778999999999833554336725454332148727715888789999998388467999999


Q ss_pred             HHHCCCEEECCEEEECCCEEECCCCEEE
Q ss_conf             7624978788889413534833884788
Q gi|254780187|r  115 FVNHRHVLVNGRSVNIGSYRCKEGDVIE  142 (206)
Q Consensus       115 ~v~hg~i~vng~~v~~ps~~~k~gd~I~  142 (206)
                      +|.+|.|.|||++|+-|++.+..+|.+.
T Consensus       128 lI~~ggv~in~~ki~d~~~~i~~~~l~~  155 (174)
T 1jil_A          128 DVNNGAIYINGERQQDVNYALAPEDKID  155 (174)
T ss_dssp             ----------------------------
T ss_pred             HHHCCCEEECCEEECCCCCEECHHHCCC
T ss_conf             9984998999998138444007757048


No 19 
>>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:345-432)
Probab=97.56  E-value=5.9e-05  Score=52.43  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEE
Q ss_conf             8888899862121247887887624978788889413534833884788
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE  142 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~  142 (206)
                      .++..++..+|+++|..+||.+|..|.|.|||++|+-|.+.+.++|.+.
T Consensus        12 ~~i~~lL~~~gl~~S~~earrlI~~GgV~IN~~~v~d~~~~i~~~~~i~   60 (88)
T 2jan_A           12 DGIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFLH   60 (88)
T ss_dssp             CSHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSBT
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCCHHHHCC
T ss_conf             7799999982886789999999993999989998169433027878227


No 20 
>>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} (A:246-419)
Probab=96.89  E-value=0.00018  Score=49.34  Aligned_cols=94  Identities=13%  Similarity=0.033  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC--CHHHHH-----------HHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             8999999884855515654799999998753033443--026899-----------999888889986212124788788
Q gi|254780187|r   48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT--SHNLIS-----------FLESRLDTIVYRAKFVPTIFAARQ  114 (206)
Q Consensus        48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t--~~~ll~-----------~LE~RLD~~v~r~g~a~t~~~Arq  114 (206)
                      .+....++.=.+.++|.=.-.+-...+......+...  ...+..           .-+.++..++..+|+++|..+||.
T Consensus        48 ~aqk~LA~eit~~vHG~~~a~~A~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~gl~~S~seaRr  127 (174)
T 2ts1_A           48 AAQKTLAEEVTKLVHGEEALRQAIRISEALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQARE  127 (174)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHC-----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf             67899999999975122556799997766303664567715566655304302215799769999998598677899999


Q ss_pred             HHHCCCEEECCEEEECCCEEECCCCEE
Q ss_conf             762497878888941353483388478
Q gi|254780187|r  115 FVNHRHVLVNGRSVNIGSYRCKEGDVI  141 (206)
Q Consensus       115 ~v~hg~i~vng~~v~~ps~~~k~gd~I  141 (206)
                      +|.+|-|.|||.+|+-|.+.+.+.|.+
T Consensus       128 lI~~ggv~in~~ki~d~~~~i~~~~~~  154 (174)
T 2ts1_A          128 DIQNGAIYVNGERLQDVGAILTAEHRL  154 (174)
T ss_dssp             ---------------------------
T ss_pred             HHHCCCEEECCEEECCCCCCCCHHHCC
T ss_conf             998699898999823842201775714


No 21 
>>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} (A:1-81)
Probab=96.84  E-value=0.0015  Score=43.24  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             6212124788788762497878888941353483388478861100
Q gi|254780187|r  102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus       102 r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
                      ++++|.|..+|+.++..|.|.|||+..+-+.|.+-.-|+|++....
T Consensus        17 ~Lk~A~t~rEak~Il~~~~V~VDGkvr~D~~~pvG~mDVIsi~~e~   62 (81)
T 3kbg_A           17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEINGES   62 (81)
T ss_dssp             HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEETTEE
T ss_pred             HHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEECCCE
T ss_conf             6452265899999986793898999962389988706799979977


No 22 
>>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} (A:)
Probab=95.53  E-value=0.0026  Score=41.77  Aligned_cols=55  Identities=18%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             9998888899862121247887887624978788889413534833884788611
Q gi|254780187|r   91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        91 ~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .-.+|||.++.+.+...|+..+.+++..|.|.|||++++.|.+.+..++++.+..
T Consensus        14 ~~g~rl~~~L~~~~~~~sr~~~~~~i~~G~V~vng~~~~~~~~~~~~~~~~~~~~   68 (325)
T 1v9f_A           14 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA   68 (325)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECC
T ss_conf             4886699999986686799999999986998999999178320625898997325


No 23 
>>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} (A:1-84)
Probab=83.74  E-value=0.54  Score=26.71  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC
Q ss_conf             033443026899999888889986212124788788762497878888941---3534833884788611
Q gi|254780187|r   79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        79 ~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~  145 (206)
                      --.|.|...++..|+.+..      ++.........+..+=.|.|||+-+.   -.+..++.||.|.+=+
T Consensus        19 ~v~~~Tv~~ll~~L~~~~p------~~~~~l~~~g~~~~~v~i~vNg~~i~~~~~~~t~l~dgDeVai~P   82 (84)
T 1v8c_A           19 ELPGATVGEVLENLVRAYP------ALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP   82 (84)
T ss_dssp             ECCCSBHHHHHHHHHHHCG------GGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred             EECCCCHHHHHHHHHHHCC------CCHHHCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             9578999999999985786------302200344351013899987877414578886869999999969


No 24 
>>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:1-99,D:194-209)
Probab=83.63  E-value=0.11  Score=31.14  Aligned_cols=16  Identities=44%  Similarity=0.787  Sum_probs=12.4

Q ss_pred             CCCCCCCCEEEEEECC
Q ss_conf             6753466316775049
Q gi|254780187|r  191 YPVIMQPNLVVEFYSR  206 (206)
Q Consensus       191 ~p~~ine~LVVEyYSR  206 (206)
                      +...+||+||||||||
T Consensus       100 ~~~~~~~~~~~~~~~~  115 (115)
T 2vqe_D          100 LALPVNEQLVIEFYSR  115 (115)
T ss_dssp             CCCSCCHHHHHHHTTC
T ss_pred             CCCCCCCCEEEEECCC
T ss_conf             7988771479985279


No 25 
>>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} (A:1-102,A:201-217)
Probab=78.34  E-value=0.51  Score=26.88  Aligned_cols=37  Identities=8%  Similarity=-0.198  Sum_probs=31.7

Q ss_pred             HHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             7887887624978788889413534833884788611
Q gi|254780187|r  109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       109 ~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      +.++.++|..|.|.|||++|.-+.+..-+|..|...+
T Consensus         2 Rr~~~~~i~~G~V~Vng~~v~~~d~i~~~~~~I~yed   38 (119)
T 2olw_A            2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP   38 (119)
T ss_dssp             -----------------------------------CC
T ss_pred             CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             5367068714212255422120554003556887899


No 26 
>>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:1-96,D:191-206)
Probab=77.42  E-value=0.34  Score=28.05  Aligned_cols=16  Identities=31%  Similarity=0.613  Sum_probs=13.6

Q ss_pred             CCCCCCCCEEEEEECC
Q ss_conf             6753466316775049
Q gi|254780187|r  191 YPVIMQPNLVVEFYSR  206 (206)
Q Consensus       191 ~p~~ine~LVVEyYSR  206 (206)
                      +..++||+||||+||+
T Consensus        97 ~~~~~~~~~~~~~~~~  112 (112)
T 3i1m_D           97 LSADINEHLIVELYSK  112 (112)
T ss_dssp             CCSSCCSTTTTTTTTC
T ss_pred             CCCCCCCCEEEEECCC
T ss_conf             8988760479985469


No 27 
>>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} (A:81-238)
Probab=74.74  E-value=3.7  Score=21.31  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=25.3

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             24978788889413534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .+|-+.+||+.+....+.|+.||+|.|-.
T Consensus        53 ~ngt~~~n~~~~~~~~~~L~~Gd~i~iG~   81 (158)
T 1wv3_A           53 KNTDVYINYELQEQLTNKAYIGDHIYVEG   81 (158)
T ss_dssp             TTCCEEETTEECCSSEEEEETTCEEEETT
T ss_pred             CCCCEEECCEEEECCEEECCCCCEEEECC
T ss_conf             89869987899725504304899999998


No 28 
>>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* (A:)
Probab=74.55  E-value=3.3  Score=21.62  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             49787888894135348338847886110
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      -.-+.|||+++..-.+.|..||+|.+-..
T Consensus        86 ~ngt~vNg~~i~~~~~~L~~gd~I~iG~~  114 (151)
T 2jqj_A           86 RNGTFINGNRLVKKDYILKNGDRIVFGKS  114 (151)
T ss_dssp             SSCEEETTEECCSSCEEECSSEEEEETTT
T ss_pred             CCCCCCCCEEECCCCEECCCCCEEEECCC
T ss_conf             87541688591689769899999998997


No 29 
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:169-272)
Probab=66.96  E-value=2.9  Score=22.00  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=26.5

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             4978788889413534833884788611002
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      .-.+.-||+...+|+..|.+||+|.+++...
T Consensus        10 ~~~V~rdg~~~~i~~~~lv~GDii~i~~G~~   40 (104)
T 3ixz_A           10 QATVIRDGDKFQINADQLVVGDLVEMKGGDR   40 (104)
T ss_pred             EEEEEECCEEEEEEHHHCCCCCEEEECCCCE
T ss_conf             6699999999998889988388899999899


No 30 
>>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A (A:)
Probab=63.80  E-value=2.3  Score=22.67  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             34430268999998888899862121247887887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .+.|...++..|+.+....--++     ....-++-.+=.|.|||+.+..   ++..|++||.|++=+
T Consensus        23 ~~~Tv~~ll~~L~~~~p~~~~~l-----~~~~~~~~~~v~v~vNg~~v~~~~~~~t~l~~gD~V~ilP   85 (90)
T 2g1e_A           23 GISKISELLERLKVEYGSEFTKQ-----MYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP   85 (90)
T ss_dssp             SCCBHHHHHHHHHHHSCHHHHHH-----HCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHCHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             99989999999996742789999-----8501023335045770300023446565379999999968


No 31 
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:1-86,A:171-268)
Probab=62.55  E-value=5  Score=20.45  Aligned_cols=52  Identities=21%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCC-CCC-CCEEEECCCCCEEE
Q ss_conf             49787888894135348338847886110022699998775216-899-96278812431899
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDV-PEYISVNHDNMVAT  178 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~-~~~-P~wLevd~~~l~g~  178 (206)
                      +-.|.-||..+.||+-.|.|||+|.|+...+--         ++ +-+ ..-+.+|...|+|.
T Consensus        89 ~a~ViRdG~~~~I~~~~Lv~GDiV~i~~Gd~VP---------aDg~ii~~g~~~vdes~LTGE  142 (184)
T 2zxe_A           89 QALVIRDGEKSTINAEFVVAGDLVEVKGGDRIP---------ADLRIISAHGCKVDNSSLTGE  142 (184)
T ss_dssp             EEEEEETTEEEEEEGGGCCTTCEEEEETTCBCC---------SEEEEEEEEEEEEECHHHHSC
T ss_pred             EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEE---------EEEEEEEECCEEEECCHHHCC
T ss_conf             669999999999888998808889999989995---------017999846728984320079


No 32 
>>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:1-14,A:238-386)
Probab=62.17  E-value=6.8  Score=19.60  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=26.7

Q ss_pred             HHHHHCCCEEECCEE-------------EECCCEEECCCCEEEECCHH
Q ss_conf             887624978788889-------------41353483388478861100
Q gi|254780187|r  113 RQFVNHRHVLVNGRS-------------VNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus       113 rq~v~hg~i~vng~~-------------v~~ps~~~k~gd~I~~~~ks  147 (206)
                      |.+=+.+++++||++             |+++...+++||.+++=-+.
T Consensus        72 R~lsn~~~vli~G~~~pivGrI~MD~~mVDvtd~~~~vGd~V~L~G~~  119 (163)
T 1vfs_A           72 RNASGRGPVLVAGKIRRAAGRIAMDQFVVDLGEDLAEAGDEAVILGDA  119 (163)
T ss_dssp             GGGTTTCEEEETTEEEEBCSCCCSSCEEEEEETCCCCTTCEEEEECCG
T ss_pred             CCCCCCEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCEEEEEECC
T ss_conf             235577089999999389729855717998889878989999998689


No 33 
>>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consortium, SGC, ATP-binding, coiled coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} (A:)
Probab=59.38  E-value=12  Score=17.92  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             24978788889413534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      +-.-+.|||+.++-| +.|+.||+|++-+
T Consensus        88 s~ngt~vNg~~l~~~-~~L~~Gd~i~iG~  115 (124)
T 3fm8_A           88 KNTRTFVNGSSVSSP-IQLHHGDRILWGN  115 (124)
T ss_dssp             TTCCEEETTEECCSC-EEECTTCEEEETT
T ss_pred             CCCCEEECCCEECCC-EECCCCCEEEECC
T ss_conf             888658874183676-6999999999899


No 34 
>>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F (A:)
Probab=56.43  E-value=7.5  Score=19.32  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=26.7

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             24978788889413534833884788611002
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      ..=.+.-||+...+|+-.+.+||+|.+++...
T Consensus        12 ~~~~vir~g~~~~i~~~~l~~GDii~v~~G~~   43 (113)
T 2hc8_A           12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEK   43 (113)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEECTTCB
T ss_pred             CEEEEEECCEEEEEEHHHCCCCCEEEEECCCE
T ss_conf             98999999999999979986036997813867


No 35 
>>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* (A:1-115)
Probab=56.19  E-value=11  Score=18.36  Aligned_cols=29  Identities=14%  Similarity=0.043  Sum_probs=19.2

Q ss_pred             HCCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             249787888894135-34833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      +..-..|||+++... .+.|+.||+|++-.
T Consensus        75 S~nGt~vNg~~i~~~~~~~L~~Gd~i~iG~  104 (115)
T 3huf_A           75 TKFGTKVNEKVVGQNGDSYKEKDLKIQLGK  104 (115)
T ss_dssp             CSSCEEETTEECCTTCEEECSSEEEEEETT
T ss_pred             CCCCEEECCEECCCCCEEECCCCCEEEECC
T ss_conf             767767899984788447778998899778


No 36 
>>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A (A:)
Probab=55.08  E-value=9.2  Score=18.74  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             34430268999998888899862121247887887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .|.|...++..|+.+.-..--+..+   ....-.+-.+=.|.|||+.+..   ++..+++||.|++=+
T Consensus        30 ~~~Tv~~li~~l~~~~p~~~~~~~~---~~~~~~~~~~~~v~vNg~~i~~~~~~~t~L~~gDeV~i~p   94 (99)
T 2qjl_A           30 DPVTVGDLIDHIVSTMINNPNDVSI---FIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS   94 (99)
T ss_dssp             SCCBHHHHHHHHHHHTCSSGGGHHH---HEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHH---HCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCEEEEEC
T ss_conf             8888999999999874553034331---1234542322899987958781788775859979999967


No 37 
>>2cu3_A Unknown function protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus HB8} (A:)
Probab=54.42  E-value=12  Score=18.09  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             CEEECCEEEECC---CEEECCCCEEEEC
Q ss_conf             787888894135---3483388478861
Q gi|254780187|r  120 HVLVNGRSVNIG---SYRCKEGDVIEVK  144 (206)
Q Consensus       120 ~i~vng~~v~~p---s~~~k~gd~I~~~  144 (206)
                      .+.|||..|-..   ++.|+.||.|++-
T Consensus        31 av~vN~~ivpr~~w~~~~L~~gD~ieii   58 (64)
T 2cu3_A           31 AVLLNEEAFLGLEVPDRPLRDGDVVEVV   58 (64)
T ss_dssp             EEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred             EEEECCEEECHHHCCCCCCCCCCEEEEE
T ss_conf             9999999818889381328998999999


No 38 
>>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3dwm_A (C:)
Probab=54.00  E-value=9.8  Score=18.55  Aligned_cols=63  Identities=22%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             334430268999998888899862121247887887624978788889413---534833884788611
Q gi|254780187|r   80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      ..|.|...|+..|+.+..-.--++-....-   -++-.+=.|+|||..|..   ....+++||.|.+=+
T Consensus        23 ~~~~Tv~~ll~~l~~~~p~~~~~l~~~~~~---~~~~~~i~v~vNg~~v~~~~~~~t~l~~gDeV~ilP   88 (93)
T 3dwg_C           23 ASGDTLGAVISDLEANYSGISERLMDPSSP---GKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP   88 (93)
T ss_dssp             ECCSBHHHHHHHHHHHSTTHHHHHBCSSST---TSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred             ECCCCHHHHHHHHHHHCCHHHHHHCCCCCC---CCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             678899999999985774177763032223---442301799985745100147666379989999968


No 39 
>>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A (A:)
Probab=52.38  E-value=10  Score=18.47  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             CEEECCEEEEC---CCEEECCCCEEEEC
Q ss_conf             78788889413---53483388478861
Q gi|254780187|r  120 HVLVNGRSVNI---GSYRCKEGDVIEVK  144 (206)
Q Consensus       120 ~i~vng~~v~~---ps~~~k~gd~I~~~  144 (206)
                      -|.|||..|..   .++.++.||.|++-
T Consensus        36 aV~vN~~iVpr~~w~~~~L~~gD~IeIi   63 (78)
T 2k5p_A           36 TVELNGEVLEREAFDATTVKDGDAVEFL   63 (78)
T ss_dssp             CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred             EEEECCEEECHHHHCCCCCCCCCEEEEE
T ss_conf             9998999947789180448997999999


No 40 
>>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, biosynthetic protein; 3.15A {Bacillus subtilis} (B:)
Probab=52.04  E-value=13  Score=17.80  Aligned_cols=23  Identities=26%  Similarity=0.237  Sum_probs=10.6

Q ss_pred             EEECCEEEECC---CEEECCCCEEEE
Q ss_conf             87888894135---348338847886
Q gi|254780187|r  121 VLVNGRSVNIG---SYRCKEGDVIEV  143 (206)
Q Consensus       121 i~vng~~v~~p---s~~~k~gd~I~~  143 (206)
                      |.|||..|..-   ++.|+.||.|++
T Consensus        55 V~vN~~iVpr~~w~~~~L~~gD~IEI   80 (87)
T 1tyg_B           55 VERNKEIIGKERYHEVELCDRDVIEI   80 (87)
T ss_dssp             EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred             EEECCEECCHHHCCHHCCCCCCEEEE
T ss_conf             99899987867875305999799999


No 41 
>>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} (A:)
Probab=50.79  E-value=10  Score=18.51  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=18.5

Q ss_pred             CEEECCEEEEC---CCEEECCCCEEEEC
Q ss_conf             78788889413---53483388478861
Q gi|254780187|r  120 HVLVNGRSVNI---GSYRCKEGDVIEVK  144 (206)
Q Consensus       120 ~i~vng~~v~~---ps~~~k~gd~I~~~  144 (206)
                      -|.|||..|..   .++.|+.||.|++-
T Consensus        32 aVavN~~iIpr~~w~~~~L~~gD~IEIv   59 (73)
T 2kl0_A           32 AVALNYDVVPRGKWDETPVTAGDEIEIL   59 (73)
T ss_dssp             EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred             EEEECCEEECHHHCCCCCCCCCCEEEEE
T ss_conf             9998999918889281318998999999


No 42 
>>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown function; NMR {Pyrococcus furiosus dsm 3638} (A:)
Probab=50.19  E-value=7.2  Score=19.43  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             78788889413534833884788611
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .|.|||..++ ++..|+.||.|++-+
T Consensus        48 ~v~vNg~~v~-~~~~L~dgD~v~i~~   72 (77)
T 1rws_A           48 IAKVNGKVVL-EDDEVKDGDFVEVIP   72 (77)
T ss_dssp             CEEETTEEEC-SSSCCCSSCCCBCSC
T ss_pred             HEEECCEECC-CCCCCCCCCEEEEEE
T ss_conf             1559999969-972869999999990


No 43 
>>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} (A:290-388)
Probab=49.73  E-value=14  Score=17.49  Aligned_cols=27  Identities=19%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             4978788889413534833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -.-+.|||+.+. ..+.+++||.|.+-.
T Consensus        58 ~~g~~vng~~v~-~~~~L~~Gd~i~iG~   84 (99)
T 2ff4_A           58 SNGVHVQHERIR-SAVTLNDGDHIRICD   84 (99)
T ss_dssp             SSCCEETTEECS-SEEEECTTCEEEETT
T ss_pred             CCCEEECCEECC-CCEECCCCCEEEECC
T ss_conf             878579999987-856789999999978


No 44 
>>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} (A:1-31,A:92-128)
Probab=49.08  E-value=7.7  Score=19.22  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             EECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             788889413534833884788611002
Q gi|254780187|r  122 LVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       122 ~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      ++.-.-|+-|.|.+.-||+|+|-++|-
T Consensus        17 tikrsgvdgphfplsHGDvITIvDRSF   43 (68)
T 1r21_A           17 TIKRSGVDGPHFPLSHGDVITIIDRSF   43 (68)
T ss_dssp             EEEETTEEEEEEECCTTEEEECSSCEE
T ss_pred             EEECCCCCCCEEEECCCCEEEECCEEE
T ss_conf             998389886589968999999989999


No 45 
>>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=48.92  E-value=2.4  Score=22.58  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             344302689999988888998621212478-87887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF-AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~-~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .+.|...|+..|+.+...      +..... ..-++..+=.|+|||+-+..   ....|+.||.|.+=+
T Consensus        41 ~~~Tv~~ll~~L~~~~p~------l~~~l~d~~~~~~~~i~v~vN~~~v~~~~~~~t~l~~gDeV~i~P  103 (114)
T 1wgk_A           41 EPWDIRNLLVWIKKNLLK------ERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS  103 (114)
T ss_dssp             SCCBHHHHHHHHTTTTCC------SCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCC------CCHHHHCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEC
T ss_conf             875699999999987675------223453147885055899975842460568663769979999978


No 46 
>>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=48.91  E-value=14  Score=17.52  Aligned_cols=26  Identities=12%  Similarity=0.197  Sum_probs=16.6

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             978788889413534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ..+.|||+.++-+ ..|++||+|.+-.
T Consensus        80 ngt~vNg~~i~~~-~~L~~gd~i~iG~  105 (120)
T 1wln_A           80 AETYVDGQRISET-TMLQSGMRLQFGT  105 (120)
T ss_dssp             SCEEETSCBCSSC-EEECTTCEEEETT
T ss_pred             CCEEECCCCCCEE-EECCCCCEEEECC
T ss_conf             6169998691432-9888999999899


No 47 
>>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} (A:133-225)
Probab=48.80  E-value=1.9  Score=23.19  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             EEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             8788889413534833884788611002
Q gi|254780187|r  121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       121 i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      |.-||+...+|+..|.+||+|.+++...
T Consensus         2 V~r~g~~~~i~~~~l~~GDii~v~~G~~   29 (93)
T 3b8c_A            2 VLRDGKWSEQEAAILVPGDIVSIKLGDI   29 (93)
T ss_dssp             CCCSSCSCCCCTTTTCTTSBCCCCSSCC
T ss_pred             EEECCEEEEEEHHHCCCCCEEEECCCCE
T ss_conf             9999999998889989898899999899


No 48 
>>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} (A:)
Probab=48.63  E-value=16  Score=17.15  Aligned_cols=28  Identities=7%  Similarity=0.184  Sum_probs=20.7

Q ss_pred             CCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             49787888894135-34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      ..-+.|||+.+... .+.+++||.|++-.
T Consensus        63 ~ngt~vng~~l~~~~~~~L~~gd~I~iG~   91 (102)
T 3kt9_A           63 VNPTSIDSVVIGKDQEVKLQPGQVLHMVN   91 (102)
T ss_dssp             SSCCEETTEECCBTCEEEECTTCCEEEET
T ss_pred             CCCEEECCEEECCCCCCCCCCCCEEEEEC
T ss_conf             89758998994689761648999999908


No 49 
>>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, SGC, transport protein; 2.60A {Homo sapiens} (A:)
Probab=48.04  E-value=20  Score=16.62  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=14.9

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEEC
Q ss_conf             497878888941353483388478861
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      -..+.|||+.+.-| +.+++||+|.+-
T Consensus        70 ~ngt~vNg~~i~~~-~~L~~gD~i~iG   95 (104)
T 2g1l_A           70 GAETYVNGKLVTEP-LVLKSGNRIVMG   95 (104)
T ss_dssp             TCCEEETTEECCSC-EECCTTCEEEET
T ss_pred             CCCCEECCEECCCC-EECCCCCEEEEC
T ss_conf             78708998780242-699999999989


No 50 
>>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} (A:)
Probab=48.03  E-value=19  Score=16.66  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             978788889413-534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      .-+.|||+++.. -.+.|+.||+|.+-.
T Consensus        75 nGt~vng~~i~~~~~~~L~~gd~i~iG~  102 (138)
T 2pie_A           75 NGVWLNRARLEPLRVYSIHQGDYIQLGV  102 (138)
T ss_dssp             SCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred             CEEEECCEECCCCCEEECCCCCEEEECC
T ss_conf             4688999993799758878999999278


No 51 
>>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} (A:176-273)
Probab=47.53  E-value=8.2  Score=19.05  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=25.8

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             978788889413534833884788611002
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      -.+.-||+...+|+-.|.+||+|.+++..+
T Consensus         5 ~~v~r~g~~~~v~~~~l~~GDii~v~~G~~   34 (98)
T 1mhs_A            5 AVVLRDGTLKEIEAPEVVPGDILQVEEGTI   34 (98)
T ss_dssp             CEEECSSSEEECCTTTSCTTSEEEECTTCB
T ss_pred             EEEEECCEEEEEEHHHCCCCCEEEECCCCE
T ss_conf             499999999998889989188899999999


No 52 
>>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=47.18  E-value=16  Score=17.16  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             24978788889413534833884788611002
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      +-.-+.|||+++. +...|+.||+|.+-....
T Consensus        78 s~nGt~vNg~~i~-~~~~L~~GD~i~iG~~~~  108 (130)
T 2eh0_A           78 ERSETYVNGKRVS-QPVQLRSGNRIIMGKNHV  108 (130)
T ss_dssp             SSSCEEETTEECC-SCEECCTTCBCEESSSCC
T ss_pred             CCCCEEECCEECC-CCEECCCCCEEEECCCEE
T ss_conf             9887699996946-527879999999899879


No 53 
>>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} (A:)
Probab=46.08  E-value=20  Score=16.52  Aligned_cols=28  Identities=18%  Similarity=0.154  Sum_probs=18.6

Q ss_pred             CCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             49787888894135-34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      -.-..|||+.+... .+.|+.||+|++-.
T Consensus       102 ~NGT~vng~~i~~~~~~~L~~Gd~I~iG~  130 (149)
T 1gxc_A          102 GNGTFVNTELVGKGKRRPLNNNSEIALSL  130 (149)
T ss_dssp             SSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             88458620344266556688868233664


No 54 
>>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:1-21,A:119-227)
Probab=45.97  E-value=7.6  Score=19.28  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=38.1

Q ss_pred             HHHHH-CCCEEECCE--EEECCCEEECCCCEEEECCHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCEEE
Q ss_conf             88762-497878888--941353483388478861100226999987752-1689996278812431899
Q gi|254780187|r  113 RQFVN-HRHVLVNGR--SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVAT  178 (206)
Q Consensus       113 rq~v~-hg~i~vng~--~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~-~~~~~P~wLevd~~~l~g~  178 (206)
                      +.++. .-++..||+  ...+|+-.|.+||+|.+++..+--      .+. .-..--..+.+|...++|.
T Consensus        23 k~l~~~~a~ViR~g~~~~~~I~~~eLv~GDII~l~~Gd~IP------aDg~il~~e~~~l~VDES~LTGE   86 (130)
T 1wpg_A           23 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP------ADIRILSIKSTTLRVDQSILTGE   86 (130)
T ss_dssp             GGGSCSEEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCC------SEEEEEEECSSCCEEECHHHHSC
T ss_pred             HCCCCCEEEEEECCCCEEEEEEHHHCCCCCEEEECCCCEEE------EEEEEEEEEECCEEEECCCCCCC
T ss_conf             65799956999999636999718998808589999989996------23899997206848887625577


No 55 
>>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, alternative splicing, ATP-binding, cell cycle, disease mutation; 3.00A {Homo sapiens} PDB: 3i6w_A (A:1-125)
Probab=45.65  E-value=20  Score=16.57  Aligned_cols=28  Identities=14%  Similarity=0.063  Sum_probs=19.4

Q ss_pred             CCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             4978788889413-534833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      -.-+.|||+++.. -++.|+.||+|.+-.
T Consensus        82 ~nGt~vng~~i~~~~~~~L~~gd~i~~G~  110 (125)
T 3i6u_A           82 GNGTFVNTELVGKGKRRPLNNNSEIALSL  110 (125)
T ss_dssp             SSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred             CCCCEECCEEECCCCEEECCCCCEEEECC
T ss_conf             78877998993588648756899897545


No 56 
>>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei} (A:)
Probab=45.13  E-value=7.7  Score=19.22  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             344302689999988888998621212478---87887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF---AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~---~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .|.|...++..|+.+.-      +++....   ..-.+-.+=.|.|||+-++.   +.+.++.||.|.+-+
T Consensus        33 ~~~Tv~~ll~~L~~~~p------~~~~~l~~~~~~~~~r~~i~v~VN~~~v~~~~~~~t~L~~gDeV~ilp   97 (110)
T 2k9x_A           33 TGTNLNGLVQLLKTNYV------KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS   97 (110)
T ss_dssp             GGCCHHHHHHHHTTTTC------CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCC------CCHHHCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCEEEEEC
T ss_conf             99869999999998767------303440244556650111899988956243888564859979999978


No 57 
>>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:1-9,A:226-361)
Probab=44.75  E-value=19  Score=16.65  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=23.6

Q ss_pred             HHHHHCCCEEECCEEE-------------ECCCE--EECCCCEEEECC
Q ss_conf             8876249787888894-------------13534--833884788611
Q gi|254780187|r  113 RQFVNHRHVLVNGRSV-------------NIGSY--RCKEGDVIEVKQ  145 (206)
Q Consensus       113 rq~v~hg~i~vng~~v-------------~~ps~--~~k~gd~I~~~~  145 (206)
                      |++-+.+++++||+++             +++..  .+++||.+.+=-
T Consensus        65 R~~~~~~~vlI~G~~~pivGrI~MD~~~vdit~~p~~v~vGd~V~l~G  112 (145)
T 2dy3_A           65 RHAQGKFSVTIDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFG  112 (145)
T ss_dssp             GGGTTTCEEEETTEEEEEESCCCSSCEEEEEETCTTCCCTTCEEEEES
T ss_pred             CCCCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEC
T ss_conf             415678289999999578738747608998878845589999999978


No 58 
>>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} (A:)
Probab=42.97  E-value=14  Score=17.62  Aligned_cols=30  Identities=13%  Similarity=0.203  Sum_probs=23.3

Q ss_pred             CCCEEECCEEEEC-CCEEECCCCEEEECCHH
Q ss_conf             4978788889413-53483388478861100
Q gi|254780187|r  118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQKS  147 (206)
Q Consensus       118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~ks  147 (206)
                      ..-+.|||+++.. ..+.|+.||+|.+-...
T Consensus        82 ~nGt~vNg~~i~~~~~~~L~~GD~I~iG~~~  112 (158)
T 1dmz_A           82 TNVSYLNNNRMIQGTKFLLQDGDEIKIIWDK  112 (158)
T ss_dssp             TTCCEETTEECCSSEEEECCSSCCEESCCCT
T ss_pred             CCCEEECCEECCCCCEEECCCCCEEEECCCC
T ss_conf             6853899999489986986699999987588


No 59 
>>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A (A:)
Probab=42.88  E-value=20  Score=16.56  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             HCCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             249787888894135-34833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      +.....|||.++..- .+.|+.||+|.|-+
T Consensus       162 S~NGT~vNg~~i~~~~~~~L~~Gd~I~iG~  191 (205)
T 3elv_A          162 SSNGTCLNNVVIPGARYIELRSGDVLTLSE  191 (205)
T ss_dssp             CSSCCEETTEECCBTSCEECCTTCEEESSS
T ss_pred             CCCCEEECCEECCCCCEEECCCCCEEEECC
T ss_conf             887637999997799758899999999898


No 60 
>>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} (A:28-164)
Probab=42.54  E-value=24  Score=16.07  Aligned_cols=27  Identities=26%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             CCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             978788889413-534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      .-+.|||+.+.. -.+.|+.||+|++-.
T Consensus        80 ngt~vN~~~v~~~~~~~L~~gd~i~iG~  107 (137)
T 1g3g_A           80 NGTWLNGQKVEKNSNQLLSQGDEITVGV  107 (137)
T ss_dssp             SCEEETTEEECTTEEEECCTTCEEEESC
T ss_pred             CCEEECCEEECCCCCEECCCCCEEEECC
T ss_conf             8728999994689861979999999899


No 61 
>>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} (D:)
Probab=42.32  E-value=24  Score=16.05  Aligned_cols=53  Identities=15%  Similarity=0.036  Sum_probs=38.0

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             03344302689999988888998621212478878876--24978788889413534833884788611
Q gi|254780187|r   79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV--NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        79 ~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v--~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -..|.|...|+..|+.|-.             ..+..+  .+-.|.|||+.++ ++..++.||.|.+=+
T Consensus        22 ~~~~~tv~~l~~~L~~~~p-------------~~~~~l~~~~~~v~vn~~~v~-~~~~l~~gdeVai~P   76 (81)
T 1fm0_D           22 AADFPTVEALRQHMAAQSD-------------RWALALEDGKLLAAVNQTLVS-FDHPLTDGDEVAFFP   76 (81)
T ss_dssp             CSCCSBHHHHHHHHHTTCH-------------HHHHHHCCTTCEEEETTEECC-TTCBCCTTCEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHCC-------------HHHHHHCCCCEEEECCCEECC-CCCCCCCCCEEEEEC
T ss_conf             3899999999999987682-------------488862789589972845979-997859999999969


No 62 
>>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} (A:)
Probab=42.00  E-value=12  Score=18.10  Aligned_cols=59  Identities=25%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             334430268999998888899862121247-887887624978788889413534833884788611
Q gi|254780187|r   80 SRGDTSHNLISFLESRLDTIVYRAKFVPTI-FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~-~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ..|.|...++..|+.+.+.      +..-. ...-.+..+=.|.|||+.+. .+..++.||.|.+=+
T Consensus        34 ~~~~tv~dl~~~L~~~~p~------l~~~l~~~~~~~~~~~~v~vN~~~v~-~~~~l~dgdeV~i~P   93 (98)
T 1vjk_A           34 PEGARVRDLIEEIKKRHEK------FKEEVFGEGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFP   93 (98)
T ss_dssp             CTTCBHHHHHHHHHHHCGG------GGGSCBCSSSCTTSSBEEEETTBCCC-TTCBCCTTCEEEEES
T ss_pred             CCCCCHHHHHHHHHHHCCH------HHHHHHHHCCCCCCCEEEEECCEECC-CCCCCCCCCEEEEEC
T ss_conf             9999899999999986706------78886411014565479986788869-897819999999979


No 63 
>>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} (C:)
Probab=41.92  E-value=20  Score=16.52  Aligned_cols=28  Identities=21%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             CCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             49787888894135-34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      -.-+.|||+.+..- -+.|+.||+|.|-.
T Consensus        69 ~ngt~vNg~~i~~~~~~~L~~Gd~i~iG~   97 (143)
T 1yj5_C           69 VNPSTVGVHELKPGLSGSLSLGDVLYLVN   97 (143)
T ss_dssp             SSCCEETTEECCTTCEEEECTTCEEESSS
T ss_pred             CCCCEECCEECCCCEEEECCCCCEEEEEC
T ss_conf             88437854880476389847999999936


No 64 
>>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D} (A:)
Probab=40.29  E-value=19  Score=16.63  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=11.1

Q ss_pred             CEEECCEEEECCCEEECCCCEEEEC
Q ss_conf             7878888941353483388478861
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      -+.|||+.++- ...|++||+|.+-
T Consensus        70 gt~vng~~i~~-~~~L~~gd~i~iG   93 (106)
T 3gqs_A           70 GVIVEGRKIEH-QSTLSANQVVALG   93 (106)
T ss_dssp             CCEETTEECSS-EEECCTTCCEEET
T ss_pred             CCEECCEECCC-CEECCCCCEEEEC
T ss_conf             75179989588-2799999999999


No 65 
>>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=40.00  E-value=18  Score=16.81  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=20.6

Q ss_pred             CEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             787888894135-34833884788611
Q gi|254780187|r  120 HVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      -+.|||+.|..- .+.|..||+|.|-.
T Consensus        84 Gt~vng~~i~~~~~~~L~~gd~i~iG~  110 (145)
T 2csw_A           84 GVWLNRARLEPLRVYSIHQGDYIQLGV  110 (145)
T ss_dssp             CEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred             EEEECCEECCCCCEEECCCCCEEEECC
T ss_conf             689999996888207878998999177


No 66 
>>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain protein, transport protein; HET: NAG B12; 2.60A {Homo sapiens} (A:274-399)
Probab=39.94  E-value=20  Score=16.49  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHHHHH-H--HH------HCCCCCHHHHHHHHHCC---CEEECCEEEE--CCCEEECCCCEEEEC
Q ss_conf             026899999888889-9--86------21212478878876249---7878888941--353483388478861
Q gi|254780187|r   85 SHNLISFLESRLDTI-V--YR------AKFVPTIFAARQFVNHR---HVLVNGRSVN--IGSYRCKEGDVIEVK  144 (206)
Q Consensus        85 ~~~ll~~LE~RLD~~-v--~r------~g~a~t~~~Arq~v~hg---~i~vng~~v~--~ps~~~k~gd~I~~~  144 (206)
                      |..++..|+.=++.- -  |-      .+|..||..-++=...+   ++.|||+..+  +..|.++.||.|.+.
T Consensus        49 g~t~~~~L~~a~~~~~~~~~~~~~~~~g~yi~sI~G~~~d~~~~~~W~~~vNg~~~~~ga~~~~l~dGD~I~w~  122 (126)
T 2pmv_A           49 GSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNEGVADYIPFNHEHITAN  122 (126)
T ss_dssp             CSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSSCTTTCCCCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEE
T ss_conf             98399999999975899358887657870688662702587886379980389820147340444689989998


No 67 
>>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} (A:)
Probab=39.61  E-value=18  Score=16.86  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=17.7

Q ss_pred             CEEECCEEEE---CCCEEECCCCEEEE
Q ss_conf             7878888941---35348338847886
Q gi|254780187|r  120 HVLVNGRSVN---IGSYRCKEGDVIEV  143 (206)
Q Consensus       120 ~i~vng~~v~---~ps~~~k~gd~I~~  143 (206)
                      .|.|||..|.   .+++.++.||.|++
T Consensus        33 av~vN~~iv~k~~~~~~~l~~gD~iei   59 (66)
T 1f0z_A           33 ALAINQQIVPREQWAQHIVQDGDQILL   59 (66)
T ss_dssp             EEEETTEEECHHHHTTCCCCTTEEECE
T ss_pred             EEEECCEECCHHHCCCCCCCCCCEEEE
T ss_conf             999999993878828134899899999


No 68 
>>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} (A:)
Probab=37.78  E-value=28  Score=15.60  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             HHHCCCEEECCEEEEC-CCEEECCCCEEEECCH
Q ss_conf             7624978788889413-5348338847886110
Q gi|254780187|r  115 FVNHRHVLVNGRSVNI-GSYRCKEGDVIEVKQK  146 (206)
Q Consensus       115 ~v~hg~i~vng~~v~~-ps~~~k~gd~I~~~~k  146 (206)
                      +-+..-+.|||..+.. -.+.++.||+|.+-..
T Consensus        75 ~~S~nGt~vng~~i~~~~~~~L~~gd~I~ig~~  107 (127)
T 1g6g_A           75 DISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG  107 (127)
T ss_dssp             ECCSSCCEETTEECCTTCCEECCTTCEEEECTT
T ss_pred             CCCCCCEEECCEECCCCCCEECCCCCEEEECCC
T ss_conf             899687599999978998569899999998998


No 69 
>>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} (A:)
Probab=36.32  E-value=20  Score=16.60  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CCEEECCEEEEC-CCEEECCCCEEEECCH
Q ss_conf             978788889413-5348338847886110
Q gi|254780187|r  119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQK  146 (206)
Q Consensus       119 g~i~vng~~v~~-ps~~~k~gd~I~~~~k  146 (206)
                      .-+.|||.++.. -.+.++.||+|.|-..
T Consensus       107 NGt~vNg~~i~~~~~~~L~~Gd~I~iG~~  135 (182)
T 1qu5_A          107 NVSYLNNNRMIQGTKFLLQDGDEIKIIWD  135 (182)
T ss_dssp             SCCEETTEECCSSEEEECCTTBCCEEEEE
T ss_pred             CCEEECCEECCCCCEEECCCCCEEEECCC
T ss_conf             85599999948997388679999998768


No 70 
>>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} (A:)
Probab=35.85  E-value=15  Score=17.30  Aligned_cols=24  Identities=0%  Similarity=-0.031  Sum_probs=11.1

Q ss_pred             EEECCEEEECC-CEEECCCCEEEEC
Q ss_conf             87888894135-3483388478861
Q gi|254780187|r  121 VLVNGRSVNIG-SYRCKEGDVIEVK  144 (206)
Q Consensus       121 i~vng~~v~~p-s~~~k~gd~I~~~  144 (206)
                      ..|||.++... -+.|+.||+|.+-
T Consensus       102 t~vng~~i~~~~~~~L~~Gd~I~~G  126 (140)
T 2jpe_A          102 TFLGHIRLEPHKPQQIPIDSTVSFG  126 (140)
T ss_dssp             EESSSCEECSSSCCEECTTCCBBCS
T ss_pred             CEECEEEECCCCEEECCCCCEEEEC
T ss_conf             3897188046967799999999991


No 71 
>>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=35.77  E-value=28  Score=15.64  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=19.1

Q ss_pred             CCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             49787888894135-34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      -.-..|||+.+..- .+.|..||+|++-+
T Consensus       116 ~nGt~vNg~~i~~~~~~~L~~gd~i~~G~  144 (158)
T 3els_A          116 SNGTCLNNVVIPGARYIELRSGDVLTLSE  144 (158)
T ss_dssp             SSCCEETTEECCTTCCEECCTTEEEESSS
T ss_pred             CCCEEECCEECCCCCEEECCCCCEEEECC
T ss_conf             77759999998899747878999999767


No 72 
>>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} (A:1-10,A:222-357)
Probab=32.19  E-value=27  Score=15.72  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=22.9

Q ss_pred             HHHHHCCCEEECCEEE-------------ECCCE-EECCCCEEEECCHHH
Q ss_conf             8876249787888894-------------13534-833884788611002
Q gi|254780187|r  113 RQFVNHRHVLVNGRSV-------------NIGSY-RCKEGDVIEVKQKSK  148 (206)
Q Consensus       113 rq~v~hg~i~vng~~v-------------~~ps~-~~k~gd~I~~~~ksk  148 (206)
                      |++-+.+.+++||+++             +++.. .+++||.+++=...-
T Consensus        67 r~~sn~~~v~i~G~~~pivGrI~MD~~~vdit~~~~v~vGD~V~l~G~~i  116 (146)
T 1rcq_A           67 RHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNV  116 (146)
T ss_dssp             TTCCTTCEEEETTEEEEBCSCCCSSCEEEECTTCTTCCTTCEEEEESSSS
T ss_pred             CCCCCCCEEEECCEEEEEECEECCCEEEEECCCCCCCCCCCEEEEECCCC
T ss_conf             10468829999999937857634043899888997789999999978999


No 73 
>>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* (D:)
Probab=32.17  E-value=34  Score=15.03  Aligned_cols=50  Identities=20%  Similarity=0.127  Sum_probs=37.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             334430268999998888899862121247887887624978788889413534833884788611
Q gi|254780187|r   80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ..|.|..-|+..|+.+....               .-.+-.+.|||+.+. ....++.||.|++=+
T Consensus        23 ~~~~tv~~l~~~L~~~~~~~---------------~~~~~~v~vN~~~v~-~~~~l~dgDeVai~P   72 (77)
T 2q5w_D           23 EQALTVQQFEDLLFERYPQI---------------NNKKFQVAVNEEFVQ-KSDFIQPNDTVALIP   72 (77)
T ss_dssp             SSCEEHHHHHHHHHHHCGGG---------------TTCCCEEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHCCCC---------------CCHHHHHHCCCEECC-CCCCCCCCCEEEEEC
T ss_conf             99998999999999877855---------------113313410880768-886709989999979


No 74 
>>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A (A:)
Probab=32.10  E-value=32  Score=15.24  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=16.6

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             978788889413534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ..+.|||+.+.  ...|+.||+|.+-.
T Consensus       117 nGt~vng~~i~--~~~L~~Gd~i~lG~  141 (162)
T 2kfu_A          117 NGTYVNREPVD--SAVLANGDEVQIGK  141 (162)
T ss_dssp             SCEEETTBCCS--EEECCSSCEEEETT
T ss_pred             CCCEECCEECC--CEECCCCCEEEECC
T ss_conf             65189999996--34999999999999


No 75 
>>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A (A:)
Probab=31.81  E-value=27  Score=15.71  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             HHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             876249787888894135348338847886110
Q gi|254780187|r  114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus       114 q~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      ++|..|.=.|-++.-|-.--.+++||.|.+..+
T Consensus        13 ~~I~~G~KtIEiRl~d~kr~~ik~GD~I~F~n~   45 (109)
T 2z0t_A           13 ELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGG   45 (109)
T ss_dssp             HHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGG
T ss_pred             HHHHCCCCEEEEECCHHHHHHCCCCCEEEEECC
T ss_conf             998769988999827767862899999999478


No 76 
>>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* (A:1-30,A:243-379)
Probab=30.30  E-value=32  Score=15.27  Aligned_cols=35  Identities=34%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             HHHHHCCCEEECCEEEECC-------------CE-EECCCCEEEECCHH
Q ss_conf             8876249787888894135-------------34-83388478861100
Q gi|254780187|r  113 RQFVNHRHVLVNGRSVNIG-------------SY-RCKEGDVIEVKQKS  147 (206)
Q Consensus       113 rq~v~hg~i~vng~~v~~p-------------s~-~~k~gd~I~~~~ks  147 (206)
                      |.+-+.+.+++||++..+-             .. .+++||.+++=-..
T Consensus        88 R~~sn~~~VlI~G~~~pIvGrIsMD~~mVDitd~~~v~vGD~V~l~G~~  136 (167)
T 2rjg_A           88 RAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEG  136 (167)
T ss_dssp             TTCCTTCEEEETTEEEEBCSCCCSSCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred             EECCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             3457980899999991543186443589988898788999999995899


No 77 
>>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} (A:)
Probab=29.28  E-value=12  Score=17.89  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=18.8

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9787888894135348338847886110
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      |-|..|...=...+..+++||+||+-.+
T Consensus         4 GsVpAn~e~gq~Tglilk~GDvIsiVAk   31 (121)
T 1l7l_A            4 GEVLANNEAGQVTSIIYNPGDVITIVAA   31 (121)
T ss_dssp             EEEETTCTTCEEEEEEECTTCCEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf             5245444479635788548989998460


No 78 
>>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (D:1-109)
Probab=28.84  E-value=26  Score=15.78  Aligned_cols=15  Identities=53%  Similarity=0.804  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             689999988888998
Q gi|254780187|r   87 NLISFLESRLDTIVY  101 (206)
Q Consensus        87 ~ll~~LE~RLD~~v~  101 (206)
                      +.=.+||+||.++||
T Consensus        95 ~v~~fl~RRLqtiv~  109 (109)
T 3jyv_D           95 KVEDFLERRLQTQVY  109 (109)
T ss_dssp             HHHHHHHHBHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             788999877999999


No 79 
>>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:1-18,A:241-384)
Probab=28.69  E-value=39  Score=14.65  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=22.7

Q ss_pred             HHHHHCCCEEECCEEE-------------ECCCE--EECCCCEEEECC
Q ss_conf             8876249787888894-------------13534--833884788611
Q gi|254780187|r  113 RQFVNHRHVLVNGRSV-------------NIGSY--RCKEGDVIEVKQ  145 (206)
Q Consensus       113 rq~v~hg~i~vng~~v-------------~~ps~--~~k~gd~I~~~~  145 (206)
                      |.+=+.+++++||+++             ++...  .+++||.+++=-
T Consensus        74 R~l~~~~~vlI~G~~~PivGrI~MD~~mVDvt~~p~~~~vGD~V~l~G  121 (162)
T 1xfc_A           74 RSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFG  121 (162)
T ss_dssp             GGGTTTCEEEETTEEEEEESCCCSSCEEEEEESSSCCCCTTCEEEEEC
T ss_pred             CCCCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEC
T ss_conf             104778589999999578448856627998148877799999999970


No 80 
>>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} (A:)
Probab=28.37  E-value=40  Score=14.61  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             CCCEEECCEEEECC---------CEEECCCCEEEECC
Q ss_conf             49787888894135---------34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG---------SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p---------s~~~k~gd~I~~~~  145 (206)
                      ..-+.|||+.+...         .+.|..||+|.+-+
T Consensus        75 ~nGt~vng~~l~~~~~~~~~~~~~~~L~~gd~I~iG~  111 (139)
T 1mzk_A           75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT  111 (139)
T ss_dssp             SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS
T ss_pred             CCCCEECCEECCCCCCCCCCCCCEEECCCCCEEEECC
T ss_conf             6774899999756334645689647889999999789


No 81 
>>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} (A:1-26,A:242-376)
Probab=27.34  E-value=41  Score=14.50  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             HHHHHCCCEEECCEEEECCC---------------EEECCCCEEEECCHHHH
Q ss_conf             88762497878888941353---------------48338847886110022
Q gi|254780187|r  113 RQFVNHRHVLVNGRSVNIGS---------------YRCKEGDVIEVKQKSKQ  149 (206)
Q Consensus       113 rq~v~hg~i~vng~~v~~ps---------------~~~k~gd~I~~~~ksk~  149 (206)
                      |.+=+.+++++||+++-+-+               ..+++||.|++=-....
T Consensus        82 R~l~~~~~vli~G~~~pIvGrIsMD~~~vDvtdi~~~v~vGD~V~l~G~~~~  133 (161)
T 3kw3_A           82 RILSNKGTVYFNGHKLPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQP  133 (161)
T ss_dssp             GGGTTTCEEEETTEEEEBCSCCCSSCEEEECTTCSSCCCTTCEEEEEBTTBC
T ss_pred             CCCCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEECCCC
T ss_conf             2457886799999980794073342489977788777999999999809999


No 82 
>>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:207-365)
Probab=26.63  E-value=43  Score=14.42  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             899999988485551565479999999875303344302689999988888
Q gi|254780187|r   48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT   98 (206)
Q Consensus        48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~   98 (206)
                      |++.-.|+    |.+ ..+..+++.+|.+..-.|    +.-++.||.||+-
T Consensus        18 Ytleafe~----Y~~-k~sd~~l~~l~qeii~~K----q~HIq~Le~rL~~   59 (159)
T 3fse_A           18 YSLEALEK----YTE-KESDVEAKALFQEXITNK----QRHIEYLETYLTR   59 (159)
T ss_dssp             HHHHHHHH----HHH-HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred             CCHHHHHH----HHH-HCCCHHHHHHHHHHHCCH----HHHHHHHHHHHHH
T ss_conf             41899999----874-423826789999970078----9999999999986


No 83 
>>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii OT3} (A:317-397)
Probab=26.41  E-value=16  Score=17.17  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=18.3

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             7878888941353483388478861100
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
                      .+.+||++|. .++.|+.||+|+|-.++
T Consensus        54 ~~~~~g~~v~-~d~~L~dgDvV~Iit~k   80 (81)
T 1wxq_A           54 INARTKRRVG-EDYELQFNDIVKIVSVT   80 (81)
T ss_dssp             EETTTCSBCC-TTCCCCTTEEEEEEEC-
T ss_pred             EECCCCEEEC-CCCEECCCCEEEEEECC
T ss_conf             8667762856-98485689889999577


No 84 
>>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=24.65  E-value=37  Score=14.82  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=8.5

Q ss_pred             EEECCEEEEC-CCEEECCCCEEEE
Q ss_conf             8788889413-5348338847886
Q gi|254780187|r  121 VLVNGRSVNI-GSYRCKEGDVIEV  143 (206)
Q Consensus       121 i~vng~~v~~-ps~~~k~gd~I~~  143 (206)
                      +.|||+.+.. -...|..||+|.+
T Consensus        78 t~vng~~i~~~~~~~L~~gd~i~i  101 (118)
T 1uht_A           78 TLLNSNALDPETSVNLGDGDVIKL  101 (118)
T ss_dssp             CEESSSBCCTTCEEECCTTEEEEE
T ss_pred             CEECCEECCCCCEEECCCCCEEEE
T ss_conf             123886948994698999999999


No 85 
>>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} (A:)
Probab=23.86  E-value=34  Score=15.02  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=19.5

Q ss_pred             CEEEECCCEEECCCCEEEECCHHH
Q ss_conf             889413534833884788611002
Q gi|254780187|r  125 GRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       125 g~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      +....+|+..|.+||+|.+++...
T Consensus        32 ~~~~~i~~~~l~~GDii~i~~G~~   55 (124)
T 2kij_A           32 LSEEQVDVELVQRGDIIKVVPGGK   55 (124)
T ss_dssp             CEEEEEETTTCCTTCEEECCTTCB
T ss_pred             CEEEEEEHHHCCCCCEEEEECCCE
T ss_conf             305997889978898999912867


No 86 
>>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment; HET: TPT DDQ; 2.6A {Streptococcus pneumoniae} (A:86-127)
Probab=23.47  E-value=39  Score=14.65  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=19.2

Q ss_pred             EEECCEEEECCCEEECCCCEEEEC
Q ss_conf             878888941353483388478861
Q gi|254780187|r  121 VLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       121 i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      +.-+|...+.|+|.+.|.-.|+++
T Consensus        19 l~~dGt~Adkp~FtvEPdGLIT~K   42 (42)
T 1hcx_A           19 LKPDGTLADRPEFTVEPDGLITVK   42 (42)
T ss_dssp             ECTTSCBCSSCCEEECTTCCEEEC
T ss_pred             ECCCCCCCCCCCEEECCCCEEECC
T ss_conf             778861046873235688337619


No 87 
>>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} (A:)
Probab=23.40  E-value=49  Score=14.03  Aligned_cols=26  Identities=8%  Similarity=-0.037  Sum_probs=14.1

Q ss_pred             CEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             78788889413-534833884788611
Q gi|254780187|r  120 HVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      -+.|||+.+.- -.+.|..||+|.+-.
T Consensus        71 gt~vng~~i~~~~~~~L~~gd~i~ig~   97 (110)
T 2brf_A           71 PSTTGTQELKPGLEGSLGVGDTLYLVN   97 (110)
T ss_dssp             CCEEC-CBCCTTCEEEEETTCEEEEET
T ss_pred             CCEEEEEEECCCCEEECCCCCEEEEEC
T ss_conf             638989994078479968999999908


No 88 
>>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} (A:1-15,A:239-375)
Probab=23.33  E-value=49  Score=14.02  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             HHCCCEEECCEEEECCCEE------------ECCCCEEEEC
Q ss_conf             6249787888894135348------------3388478861
Q gi|254780187|r  116 VNHRHVLVNGRSVNIGSYR------------CKEGDVIEVK  144 (206)
Q Consensus       116 v~hg~i~vng~~v~~ps~~------------~k~gd~I~~~  144 (206)
                      .+.+++++||+++-+-+-.            ++.||.+++=
T Consensus        75 l~~~~V~I~G~~~pIvGrI~MD~~~VDit~~~~vGd~V~L~  115 (152)
T 3hur_A           75 MQKSSVIINGKRMPIIGRITMDQTMVKLDRKYPIGTRVTLI  115 (152)
T ss_dssp             EEEEEEEETTEEEEBCSCCCSSCEEEECSSCCCTTCEEEEE
T ss_pred             CCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCEEEEE
T ss_conf             47988999999988874883452899898999999999999


No 89 
>>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* (A:399-532)
Probab=23.20  E-value=24  Score=16.04  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHCCCEEECCEEEECCCE
Q ss_conf             247887887624978788889413534
Q gi|254780187|r  107 PTIFAARQFVNHRHVLVNGRSVNIGSY  133 (206)
Q Consensus       107 ~t~~~Arq~v~hg~i~vng~~v~~ps~  133 (206)
                      -||.|--|.|.||-.+-||+.||..-+
T Consensus        54 ISR~QlWQWi~hg~~l~dG~~vt~~~v   80 (134)
T 3cuz_A           54 ISRTSIWQWIHHQKTLSNGKPVTKALF   80 (134)
T ss_dssp             HHHHHHHHHHHTTCBCTTSCBCCHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             999999999976777788847269999


No 90 
>>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} (I:)
Probab=22.85  E-value=34  Score=15.02  Aligned_cols=18  Identities=17%  Similarity=0.361  Sum_probs=15.0

Q ss_pred             EECCCEEECCCCEEEECC
Q ss_conf             413534833884788611
Q gi|254780187|r  128 VNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       128 v~~ps~~~k~gd~I~~~~  145 (206)
                      +--|+..|++||+|.|.+
T Consensus        43 aHD~~~~~~~GD~V~I~e   60 (89)
T 1qd7_I           43 AHDEHNEAKVGDIVKIME   60 (89)
T ss_pred             EECCCCCCCCCCEEEEEE
T ss_conf             999999899998999998


No 91 
>>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} (B:1-118)
Probab=22.54  E-value=41  Score=14.50  Aligned_cols=18  Identities=28%  Similarity=0.460  Sum_probs=15.1

Q ss_pred             EEECCCEEECCCCEEEEC
Q ss_conf             941353483388478861
Q gi|254780187|r  127 SVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       127 ~v~~ps~~~k~gd~I~~~  144 (206)
                      -++++.+.+++||.|.+.
T Consensus        49 a~~~~~~~v~~GD~i~v~   66 (118)
T 1y43_B           49 AYDFSDITISEGDSIKVT   66 (118)
T ss_dssp             CEEETTCCCCTTCEEEEE
T ss_pred             CCCCCCCCCCCCCEEEEE
T ss_conf             415266413899999999


No 92 
>>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* (A:309-414)
Probab=21.89  E-value=45  Score=14.24  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=17.6

Q ss_pred             CCCCHHHHHHHHHCCC-E-EECCEEEE--CCCEEECCCCEEEE
Q ss_conf             2124788788762497-8-78888941--35348338847886
Q gi|254780187|r  105 FVPTIFAARQFVNHRH-V-LVNGRSVN--IGSYRCKEGDVIEV  143 (206)
Q Consensus       105 ~a~t~~~Arq~v~hg~-i-~vng~~v~--~ps~~~k~gd~I~~  143 (206)
                      |..||..-.+-=.-|- + .|||+..+  +..|.++.||.|.+
T Consensus        59 yV~sI~G~~~~~~s~W~~y~vNG~~~~~g~~~~~l~~GD~I~w  101 (106)
T 2bb6_A           59 FLTSVLGRKAGEREFWQVLRDPDTPLQQGIADYRPKDGETIEL  101 (106)
T ss_dssp             EEEEETTEECCTTEEEEEEETTTEECSSCTTTCCCCTTCEEEE
T ss_pred             EEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEE
T ss_conf             6887735126886268986079997445734034468997999


No 93 
>>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} (A:)
Probab=20.89  E-value=46  Score=14.20  Aligned_cols=15  Identities=20%  Similarity=0.209  Sum_probs=9.1

Q ss_pred             CCCEEECCCCEEEEC
Q ss_conf             353483388478861
Q gi|254780187|r  130 IGSYRCKEGDVIEVK  144 (206)
Q Consensus       130 ~ps~~~k~gd~I~~~  144 (206)
                      -.+|.|.-||+|+|.
T Consensus        71 gl~~~L~dgDvV~I~   85 (93)
T 2eki_A           71 GKDHTLEDEDVIQIV   85 (93)
T ss_dssp             CSSCCCCSSEEECEE
T ss_pred             CCCCEECCCCEEEEE
T ss_conf             876280699999999


No 94 
>>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* (A:)
Probab=20.76  E-value=55  Score=13.69  Aligned_cols=35  Identities=14%  Similarity=-0.044  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEE
Q ss_conf             88888998621212478878876249787888894
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV  128 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v  128 (206)
                      ++||..+.+.+...|+.+++..|.+.+..+|+.-.
T Consensus        15 ~~~~~~~~~~~~~~s~~~~~~~i~~~yd~~~d~~~   49 (276)
T 2wa2_A           15 PTLGEIWKRKLNQLDAKEFMAYRRRFVVEVDRNEA   49 (276)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHTTCCCC-----
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHEEEEEECCHHH
T ss_conf             72789999875102589998766236999430078


No 95 
>>1rvx_A Hemagglutinin; viral protein; HET: SIA GAL NAG; 2.20A {Influenza a virus} (A:92-265)
Probab=20.68  E-value=44  Score=14.33  Aligned_cols=23  Identities=26%  Similarity=0.186  Sum_probs=9.8

Q ss_pred             EECCEE--EECCCEEECCCCEEEEC
Q ss_conf             788889--41353483388478861
Q gi|254780187|r  122 LVNGRS--VNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       122 ~vng~~--v~~ps~~~k~gd~I~~~  144 (206)
                      .|||+.  +++==-+|+|||.|.+.
T Consensus       131 ~V~gq~GRi~~yWtilkPgdti~f~  155 (174)
T 1rvx_A          131 KVRDQAGRMNYYWTLLKPGDTIIFE  155 (174)
T ss_dssp             CBTTBSCEEEEEEEEECTTCEEEEE
T ss_pred             CCCCCCCEEEEEEEEECCCCEEEEE
T ss_conf             7267631389999987789879997


Done!