HHsearch results for GI: 254780187 and protein with PDBid: 1c05_A

>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=100.00  E-value=0  Score=416.60  Aligned_cols=158  Identities=44%  Similarity=0.757  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEE
Q ss_conf             41358999999884855515654799999998753033443026899999888889986212124788788762497878
Q gi|254780187|r   44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV  123 (206)
Q Consensus        44 k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~v  123 (206)
                      |+|+||+||+||||+||+|| ++|+||++||++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|
T Consensus         2 K~S~Yg~qL~eKQK~k~~Yg-i~ekQ~~~~~~~a~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlv~Hghi~V   80 (159)
T 1c05_A            2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILV   80 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
T ss_conf             75759999999999999729-64899999999997058970899999999865677204775279999999998037070


Q ss_pred             CCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             88894135348338847886110022699998775216899962788124318999967884211246753466316775
Q gi|254780187|r  124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF  203 (206)
Q Consensus       124 ng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEy  203 (206)
                      ||++||||||+|+|||+|++++++++...+..+.+ ....+|+||++|.++++|++++.|++ +|  +|+.+||+|||||
T Consensus        81 Ngk~v~ipS~~vk~gD~I~~~~ksk~~~~i~~~~~-~~~~~P~~L~vd~~~l~g~v~~~P~r-~~--i~~~ine~lVVEy  156 (159)
T 1c05_A           81 DGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPER-SE--LPAEINEALIVEF  156 (159)
T ss_dssp             TTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCT-TT--SCSSCCSHHHHHH
T ss_pred             CCEEEEECCEECCCCCEEEECCCCCCHHHHHHHHH-CCCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEE
T ss_conf             24798525677489989873210221899999996-55778985899765589999955277-87--8988771579986


Q ss_pred             ECC
Q ss_conf             049
Q gi|254780187|r  204 YSR  206 (206)
Q Consensus       204 YSR  206 (206)
                      |||
T Consensus       157 YSR  159 (159)
T 1c05_A          157 YSR  159 (159)
T ss_dssp             HHC
T ss_pred             CCC
T ss_conf             369