HHsearch results for GI: 254780187 and protein with PDBid: 1c05_A
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=100.00 E-value=0 Score=416.60 Aligned_cols=158 Identities=44% Similarity=0.757 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEE
Q ss_conf 41358999999884855515654799999998753033443026899999888889986212124788788762497878
Q gi|254780187|r 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 (206)
Q Consensus 44 k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~v 123 (206)
|+|+||+||+||||+||+|| ++|+||++||++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|
T Consensus 2 K~S~Yg~qL~eKQK~k~~Yg-i~ekQ~~~~~~~a~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlv~Hghi~V 80 (159)
T 1c05_A 2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILV 80 (159)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
T ss_conf 75759999999999999729-64899999999997058970899999999865677204775279999999998037070
Q ss_pred CCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88894135348338847886110022699998775216899962788124318999967884211246753466316775
Q gi|254780187|r 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 (206)
Q Consensus 124 ng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEy 203 (206)
||++||||||+|+|||+|++++++++...+..+.+ ....+|+||++|.++++|++++.|++ +| +|+.+||+|||||
T Consensus 81 Ngk~v~ipS~~vk~gD~I~~~~ksk~~~~i~~~~~-~~~~~P~~L~vd~~~l~g~v~~~P~r-~~--i~~~ine~lVVEy 156 (159)
T 1c05_A 81 DGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPER-SE--LPAEINEALIVEF 156 (159)
T ss_dssp TTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCT-TT--SCSSCCSHHHHHH
T ss_pred CCEEEEECCEECCCCCEEEECCCCCCHHHHHHHHH-CCCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEE
T ss_conf 24798525677489989873210221899999996-55778985899765589999955277-87--8988771579986
Q ss_pred ECC
Q ss_conf 049
Q gi|254780187|r 204 YSR 206 (206)
Q Consensus 204 YSR 206 (206)
|||
T Consensus 157 YSR 159 (159)
T 1c05_A 157 YSR 159 (159)
T ss_dssp HHC
T ss_pred CCC
T ss_conf 369