HHsearch results for GI: 254780187 and protein with PDBid: 1ksk_A

>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*

Probab=98.22  E-value=1.1e-06  Score=62.71  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             88888998621212478878876249787888894135348338847886110
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +|||-.+-..+. .|+.+|..+|..|.|.|||+.|+.|++.|.+||.|.+..+
T Consensus         4 iRLdk~Ls~~~~-~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~   55 (234)
T 1ksk_A            4 MRLDKFIAQQLG-VSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN   55 (234)
T ss_dssp             EEHHHHHHHHHT-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred             CHHHHHHHHCCC-CCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC
T ss_conf             229999987789-6899999999889599999995678858177666885031