HHsearch results for GI: 254780187 and protein with PDBid: 1vio_A

>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5

Probab=97.98  E-value=6e-06  Score=57.89  Aligned_cols=53  Identities=25%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      -+|||..+-..+ ..|+.+|+++|..|.|.|||++|+.|++.|.+||.|.+.++
T Consensus         2 ~mRLdkfLs~~~-~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~   54 (243)
T 1vio_A            2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE   54 (243)
T ss_dssp             CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred             CHHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC
T ss_conf             568999999877-85899999999789099999990549968488787995486