HHsearch results for GI: 254780187 and protein with PDBid: 2vqe_D

>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=100.00  E-value=0  Score=527.58  Aligned_cols=202  Identities=40%  Similarity=0.713  Sum_probs=191.7

Q ss_pred             CCCCCCCEEEEEEECCCCCCCC------CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9764487123520058888888------8770001368998776544334135899999988485551565479999999
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF   74 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~------~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~   74 (206)
                      ||||+|||+|+|||||++||++      +|+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++||
T Consensus         1 MaRy~GPk~Ki~RRlG~~l~~~~~~~~~~K~~l~kr~~~PGqhG~~r~~k~S~Yg~qL~EKQKlr~~YG-l~EkQf~~~~   79 (209)
T 2vqe_D            1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF   79 (209)
T ss_dssp             -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_conf             986547687885207998667786667876500037899986666678763489999999999987518-8789999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHH
Q ss_conf             87530334430268999998888899862121247887887624978788889413534833884788611002269999
Q gi|254780187|r   75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL  154 (206)
Q Consensus        75 ~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~  154 (206)
                      ++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.
T Consensus        80 ~~A~k~~G~tg~~ll~lLE~RlD~vv~r~g~a~s~~~ARQ~v~Hghv~vng~~v~ips~~~k~gd~i~~~~k~~~~~~v~  159 (209)
T 2vqe_D           80 EEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIR  159 (209)
T ss_dssp             HHHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEECCCCEECCCCCEEEECCCCCCHHHHH
T ss_conf             99985689789999999999889999834751799999999873073219979735886827999998610211549999


Q ss_pred             HHHHH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             87752-16899962788124318999967884211246753466316775049
Q gi|254780187|r  155 EASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       155 ~~~~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                      ++++. ....+|+||++|.++|+|++++.|++ +|  +|+.+||+||||||||
T Consensus       160 ~~~~~~~~~~vp~wL~~d~~~l~g~v~~~P~r-~~--i~~~ine~lVVEyYSR  209 (209)
T 2vqe_D          160 QNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDR-ED--LALPVNEQLVIEFYSR  209 (209)
T ss_dssp             HHHHHTTTCCCCTTCCEETTTTEEECCSCCCG-GG--CCCSCCHHHHHHHTTC
T ss_pred             HHHHHHCCCCCCCCEEECCHHCEEEEEECCCH-HH--CCCCCCCCEEEEECCC
T ss_conf             99986152788886164251089999945478-87--8988773579986069