HHsearch results for GI: 254780187 and protein with PDBid: 3ofo_D
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=100.00 E-value=0 Score=518.56 Aligned_cols=200 Identities=39% Similarity=0.668 Sum_probs=186.6
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCC----CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 764487123520058888888877----0001368998776544334135899999988485551565479999999875
Q gi|254780187|r 2 SKRESSKHKIDRRIGENLWGRPKS----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 (206)
Q Consensus 2 ~r~~gpk~K~~RrlG~~l~~~~k~----~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A 77 (206)
|||+||++|+|||+|++||++++. ...+++++|||||.+ ++|+|+||+||+||||+||+|| ++||||++||++|
T Consensus 1 ARy~GPk~Ki~RRlG~~l~~~~~~~~~~~k~~~~~~PG~hg~~-r~K~S~Yg~qL~EKQKlr~~Yg-i~EkQf~~~~~~A 78 (205)
T 3ofo_D 1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEA 78 (205)
T ss_dssp CCCCSCHHHHHHHTTSCCCSSCSSSCSSCSSCCSSCSSSSTTS-CCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 9656745553011798866678886556433466899978888-8862589999999999988828-8779999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHH
Q ss_conf 30334430268999998888899862121247887887624978788889413534833884788611002269999877
Q gi|254780187|r 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 (206)
Q Consensus 78 ~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~ 157 (206)
.+++|+||++||++||+||||||||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.++.
T Consensus 79 ~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ips~~~k~gd~i~v~eks~~~~~~~~~~ 158 (205)
T 3ofo_D 79 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAAL 158 (205)
T ss_dssp HHSSSCHHHHHHHHHHHBHHHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCBCCTTCEEEECSSSCSCHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 74799689999999998777898606620479999988860886509978637872536998975313351478999998
Q ss_pred HH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 52-16899962788124318999967884211246753466316775049
Q gi|254780187|r 158 QL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206)
Q Consensus 158 ~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206)
+. ....+|+||++|.++|+|++++.|+++ | +|+.+||+||||||||
T Consensus 159 ~~~~~~~~P~wL~~d~~~l~g~v~~~P~r~-~--i~~~i~e~lVvEyYSr 205 (205)
T 3ofo_D 159 ELAEQREKPTWLEVDAGKMEGTFKRKPERS-D--LSADINEHLIVELYSK 205 (205)
T ss_dssp HHHHTSCCCSSEECCSSSCEEEECSCCCST-T--SCSSCCSTTHHHHTTC
T ss_pred HHHCCCCCCCEEEEECCCCEEEEEECCCHH-H--CCCCCCCCEEEEECCC
T ss_conf 620548899879976523899999521789-8--8988771479985459