HHsearch results for GI: 254780187 and protein with PDBid: 3ofo_D

>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=100.00  E-value=0  Score=518.56  Aligned_cols=200  Identities=39%  Similarity=0.668  Sum_probs=186.6

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCC----CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             764487123520058888888877----0001368998776544334135899999988485551565479999999875
Q gi|254780187|r    2 SKRESSKHKIDRRIGENLWGRPKS----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA   77 (206)
Q Consensus         2 ~r~~gpk~K~~RrlG~~l~~~~k~----~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A   77 (206)
                      |||+||++|+|||+|++||++++.    ...+++++|||||.+ ++|+|+||+||+||||+||+|| ++||||++||++|
T Consensus         1 ARy~GPk~Ki~RRlG~~l~~~~~~~~~~~k~~~~~~PG~hg~~-r~K~S~Yg~qL~EKQKlr~~Yg-i~EkQf~~~~~~A   78 (205)
T 3ofo_D            1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEA   78 (205)
T ss_dssp             CCCCSCHHHHHHHTTSCCCSSCSSSCSSCSSCCSSCSSSSTTS-CCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             9656745553011798866678886556433466899978888-8862589999999999988828-8779999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHH
Q ss_conf             30334430268999998888899862121247887887624978788889413534833884788611002269999877
Q gi|254780187|r   78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS  157 (206)
Q Consensus        78 ~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~  157 (206)
                      .+++|+||++||++||+||||||||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.++.
T Consensus        79 ~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ips~~~k~gd~i~v~eks~~~~~~~~~~  158 (205)
T 3ofo_D           79 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAAL  158 (205)
T ss_dssp             HHSSSCHHHHHHHHHHHBHHHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCBCCTTCEEEECSSSCSCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             74799689999999998777898606620479999988860886509978637872536998975313351478999998


Q ss_pred             HH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             52-16899962788124318999967884211246753466316775049
Q gi|254780187|r  158 QL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       158 ~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                      +. ....+|+||++|.++|+|++++.|+++ |  +|+.+||+||||||||
T Consensus       159 ~~~~~~~~P~wL~~d~~~l~g~v~~~P~r~-~--i~~~i~e~lVvEyYSr  205 (205)
T 3ofo_D          159 ELAEQREKPTWLEVDAGKMEGTFKRKPERS-D--LSADINEHLIVELYSK  205 (205)
T ss_dssp             HHHHTSCCCSSEECCSSSCEEEECSCCCST-T--SCSSCCSTTHHHHTTC
T ss_pred             HHHCCCCCCCEEEEECCCCEEEEEECCCHH-H--CCCCCCCCEEEEECCC
T ss_conf             620548899879976523899999521789-8--8988771479985459