Query         gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 206
No_of_seqs    159 out of 1658
Neff          5.4 
Searched_HMMs 23785
Date          Mon May 23 14:09:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780187.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2vqe_D 30S ribosomal protein S 100.0       0       0  527.6  13.3  202    1-206     1-209 (209)
  2 3ofo_D 30S ribosomal protein S 100.0       0       0  518.6  12.8  200    2-206     1-205 (205)
  3 3bbn_D Ribosomal protein S4; s 100.0       0       0  500.1  10.0  198    1-206     1-199 (201)
  4 1c05_A Ribosomal protein S4 de 100.0       0       0  416.6  13.0  158   44-206     2-159 (159)
  5 3jyv_D 40S ribosomal protein S  99.9 1.7E-28   7E-33  204.2   4.1  130    8-147    22-157 (158)
  6 1s1h_D 40S ribosomal protein S  99.9 1.3E-22 5.4E-27  166.0   3.6  131    8-147     9-144 (179)
  7 2cqj_A BRMS2, U3 small nucleol  99.7 3.4E-18 1.4E-22  137.3   1.7   59   92-150     6-66  (71)
  8 1p9k_A ORF, hypothetical prote  98.8 2.6E-10 1.1E-14   86.2   0.1   59   88-146    15-73  (79)
  9 1dm9_A Hypothetical 15.5 KD pr  98.7 8.3E-09 3.5E-13   76.4   4.9   54   93-147     8-61  (133)
 10 2k6p_A Uncharacterized protein  98.5 1.5E-08 6.3E-13   74.7   0.2   51   94-145     1-51  (92)
 11 3hp7_A Hemolysin, putative; st  98.4 4.8E-07   2E-11   65.0   6.0   52   94-145     7-60  (291)
 12 1ksk_A Ribosomal small subunit  98.2 1.1E-06 4.5E-11   62.7   4.7   52   94-146     4-55  (234)
 13 3dh3_A Ribosomal large subunit  98.1   3E-06 1.3E-10   59.8   5.0   51   94-146     7-57  (290)
 14 1vio_A Ribosomal small subunit  98.0   6E-06 2.5E-10   57.9   4.7   53   93-146     2-54  (243)
 15 1v9f_A Ribosomal large subunit  97.2 3.5E-05 1.5E-09   52.9   0.0   53   93-145    16-68  (325)
 16 1h3f_A Tyrosyl-tRNA synthetase  96.6  0.0035 1.5E-07   39.9   5.8   53   96-148   371-423 (432)
 17 3kbg_A 30S ribosomal protein S  96.5  0.0026 1.1E-07   40.8   4.7   43  102-144    17-59  (213)
 18 2jan_A Tyrosyl-tRNA synthetase  96.4   0.015 6.4E-07   35.8   8.0   43   98-140   360-402 (432)
 19 1jil_A Tyrrs, tyrosyl-tRNA syn  94.7  0.0045 1.9E-07   39.2   0.0   46   96-141   355-400 (420)
 20 2ts1_A Tyrosyl-tRNA synthetase  94.2  0.0066 2.8E-07   38.2   0.0   47   95-141   353-399 (419)
 21 2g1l_A Kinesin-like protein KI  80.7     1.3 5.6E-05   23.2   3.6   29  116-145    68-96  (104)
 22 1wv3_A Similar to DNA segregat  79.8     1.5 6.4E-05   22.8   3.7   28  117-144   133-160 (238)
 23 2jqj_A DNA damage response pro  76.7     1.9   8E-05   22.2   3.4   28  118-145    86-113 (151)
 24 1v8c_A MOAD related protein; r  72.2     1.4 5.8E-05   23.1   1.8   59   81-145    21-82  (168)
 25 3fm8_A Kinesin-like protein KI  71.7     3.6 0.00015   20.4   3.8   28  117-145    88-115 (124)
 26 2k9x_A Tburm1, uncharacterized  69.8     1.1 4.8E-05   23.6   0.9   28  118-145    67-97  (110)
 27 3hx1_A SLR1951 protein; P74513  69.2     3.5 0.00015   20.5   3.3   27  117-145    80-106 (131)
 28 2hc8_A PACS, cation-transporti  65.9     2.8 0.00012   21.1   2.3   31  118-148    13-43  (113)
 29 3hvz_A Uncharacterized protein  65.5     3.4 0.00014   20.5   2.6   24  121-145    44-67  (78)
 30 2ff4_A Probable regulatory pro  65.0     4.1 0.00017   20.0   3.0   15  166-180   338-352 (388)
 31 2eh0_A KLP, kinesin-like prote  62.1     4.7  0.0002   19.6   2.8   28  117-145    78-105 (130)
 32 2kmm_A Guanosine-3',5'-BIS(dip  61.6     4.1 0.00017   20.0   2.4   23  121-144    39-61  (73)
 33 2qjl_A URM1, ubiquitin-related  61.2     4.4 0.00019   19.8   2.6   57   81-145    30-94  (99)
 34 3ixz_A Potassium-transporting   60.4     3.3 0.00014   20.7   1.8   54  118-178   178-231 (1034)
 35 3kt9_A Aprataxin; FHA domain,   59.9       5 0.00021   19.5   2.6   29  118-146    63-92  (102)
 36 1wln_A Afadin; beta sandwich,   59.2     4.8  0.0002   19.6   2.5   26  118-144    79-104 (120)
 37 1r21_A Antigen KI-67; beta san  58.2     4.8  0.0002   19.6   2.3   26  119-145    75-100 (128)
 38 2zxe_A Na, K-ATPase alpha subu  57.1       5 0.00021   19.5   2.2   52  120-178   175-226 (1028)
 39 3gqs_A Adenylate cyclase-like   56.9       5 0.00021   19.5   2.2   25  120-145    70-94  (106)
 40 2kl0_A Putative thiamin biosyn  56.3     5.1 0.00021   19.4   2.2   23  121-143    33-58  (73)
 41 2pie_A E3 ubiquitin-protein li  53.2      11 0.00047   17.2   3.5   28  117-144    73-101 (138)
 42 1wgk_A Riken cDNA 2900073H19 p  52.7     3.4 0.00014   20.5   0.8   59   81-145    41-103 (114)
 43 2brf_A Bifunctional polynucleo  52.3       6 0.00025   19.0   2.0   29  117-145    68-97  (110)
 44 3dwg_C 9.5 kDa culture filtrat  51.1     8.7 0.00037   17.9   2.7   63   80-145    23-88  (93)
 45 1mhs_A Proton pump, plasma mem  51.0     4.7  0.0002   19.6   1.3   53  120-178   181-233 (920)
 46 1gxc_A CHK2, CDS1, serine/thre  48.4      13 0.00056   16.7   3.3   29  117-145   101-130 (149)
 47 1rws_A Hypothetical protein PF  47.9       6 0.00025   19.0   1.4   25  120-145    48-72  (77)
 48 1f0z_A THis protein; ubiquitin  47.9     7.8 0.00033   18.2   2.0   25  120-144    33-60  (66)
 49 2g1e_A Hypothetical protein TA  47.9      12  0.0005   17.0   3.0   60   81-145    23-85  (90)
 50 1yj5_C 5' polynucleotide kinas  46.3      12 0.00049   17.1   2.7   29  117-145    68-97  (143)
 51 2kfu_A RV1827 PThr 22; FHA dom  45.7     9.7 0.00041   17.6   2.3   25  119-145   117-141 (162)
 52 1bd0_A Alanine racemase; isome  45.7      15 0.00063   16.4   3.3   27  117-144   293-332 (388)
 53 2k5p_A THis protein, thiamine-  45.7      10 0.00044   17.4   2.4   24  121-144    37-63  (78)
 54 1mzk_A Kinase associated prote  44.9      12 0.00049   17.1   2.5   29  117-145    74-111 (139)
 55 2kb3_A Oxoglutarate dehydrogen  44.5      12 0.00052   16.9   2.6   24  120-145   109-132 (143)
 56 2q5w_D Molybdopterin convertin  44.2      16 0.00066   16.2   3.3   49   81-145    24-72  (77)
 57 3els_A PRE-mRNA leakage protei  44.2      15 0.00062   16.4   3.0   32  117-148   115-147 (158)
 58 1g3g_A Protien kinase SPK1; FH  43.9      16 0.00067   16.2   3.4   28  117-144   105-133 (164)
 59 1g6g_A Protein kinase RAD53; b  42.6      15 0.00064   16.3   2.8   28  117-144    77-105 (127)
 60 1tyg_B YJBS; alpha beta barrel  42.4      15 0.00064   16.3   2.8   11  121-131    23-33  (87)
 61 2csw_A Ubiquitin ligase protei  42.1      11 0.00047   17.2   2.1   26  119-144    83-109 (145)
 62 1vjk_A Molybdopterin convertin  41.7     9.7 0.00041   17.6   1.7   59   81-145    35-93  (98)
 63 1uht_A Expressed protein; FHA   36.9      14 0.00058   16.6   1.9   28  118-145    75-103 (118)
 64 1qu5_A Protein kinase SPK1; FH  36.0      16 0.00066   16.2   2.1   29  117-145   105-134 (182)
 65 2cu3_A Unknown function protei  35.4      21  0.0009   15.4   3.0   24  120-143    31-57  (64)
 66 1ujx_A Polynucleotide kinase 3  35.3     5.9 0.00025   19.0  -0.2   30  117-146    75-105 (119)
 67 1l7l_A PA-I galactophilic lect  35.0     6.3 0.00027   18.8  -0.1   28  119-146     4-31  (121)
 68 3kmh_A D-lyxose isomerase; cup  34.8      22 0.00092   15.3   3.8   29  120-148   158-189 (246)
 69 1lgp_A Cell cycle checkpoint p  33.2     9.9 0.00042   17.5   0.7   29  117-145    66-95  (116)
 70 1dmz_A Protein (protein kinase  31.7      23 0.00096   15.2   2.3   29  117-145    81-110 (158)
 71 3b8c_A ATPase 2, plasma membra  31.3     3.9 0.00016   20.2  -1.7   52  118-178   131-184 (885)
 72 2jpe_A Nuclear inhibitor of pr  26.1      22 0.00092   15.3   1.4   29  117-145    98-127 (140)
 73 2kij_A Copper-transporting ATP  23.7      29  0.0012   14.5   1.7   23  126-148    33-55  (124)
 74 1wpg_A Sarcoplasmic/endoplasmi  23.1      22 0.00092   15.3   0.9   55  119-178   127-183 (994)
 75 3elv_A PRE-mRNA leakage protei  20.5      39  0.0017   13.7   3.2   29  119-147   164-193 (205)
 76 2z0t_A Putative uncharacterize  20.2      40  0.0017   13.6   1.9   32  114-145    13-44  (109)

No 1  
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=100.00  E-value=0  Score=527.58  Aligned_cols=202  Identities=40%  Similarity=0.713  Sum_probs=191.7

Q ss_pred             CCCCCCCEEEEEEECCCCCCCC------CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9764487123520058888888------8770001368998776544334135899999988485551565479999999
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF   74 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~------~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~   74 (206)
                      ||||+|||+|+|||||++||++      +|+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++||
T Consensus         1 MaRy~GPk~Ki~RRlG~~l~~~~~~~~~~K~~l~kr~~~PGqhG~~r~~k~S~Yg~qL~EKQKlr~~YG-l~EkQf~~~~   79 (209)
T 2vqe_D            1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF   79 (209)
T ss_dssp             -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_conf             986547687885207998667786667876500037899986666678763489999999999987518-8789999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHH
Q ss_conf             87530334430268999998888899862121247887887624978788889413534833884788611002269999
Q gi|254780187|r   75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL  154 (206)
Q Consensus        75 ~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~  154 (206)
                      ++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.
T Consensus        80 ~~A~k~~G~tg~~ll~lLE~RlD~vv~r~g~a~s~~~ARQ~v~Hghv~vng~~v~ips~~~k~gd~i~~~~k~~~~~~v~  159 (209)
T 2vqe_D           80 EEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIR  159 (209)
T ss_dssp             HHHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEECCCCEECCCCCEEEECCCCCCHHHHH
T ss_conf             99985689789999999999889999834751799999999873073219979735886827999998610211549999


Q ss_pred             HHHHH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             87752-16899962788124318999967884211246753466316775049
Q gi|254780187|r  155 EASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       155 ~~~~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                      ++++. ....+|+||++|.++|+|++++.|++ +|  +|+.+||+||||||||
T Consensus       160 ~~~~~~~~~~vp~wL~~d~~~l~g~v~~~P~r-~~--i~~~ine~lVVEyYSR  209 (209)
T 2vqe_D          160 QNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDR-ED--LALPVNEQLVIEFYSR  209 (209)
T ss_dssp             HHHHHTTTCCCCTTCCEETTTTEEECCSCCCG-GG--CCCSCCHHHHHHHTTC
T ss_pred             HHHHHHCCCCCCCCEEECCHHCEEEEEECCCH-HH--CCCCCCCCEEEEECCC
T ss_conf             99986152788886164251089999945478-87--8988773579986069


No 2  
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=100.00  E-value=0  Score=518.56  Aligned_cols=200  Identities=39%  Similarity=0.668  Sum_probs=186.6

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCC----CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             764487123520058888888877----0001368998776544334135899999988485551565479999999875
Q gi|254780187|r    2 SKRESSKHKIDRRIGENLWGRPKS----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA   77 (206)
Q Consensus         2 ~r~~gpk~K~~RrlG~~l~~~~k~----~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A   77 (206)
                      |||+||++|+|||+|++||++++.    ...+++++|||||.+ ++|+|+||+||+||||+||+|| ++||||++||++|
T Consensus         1 ARy~GPk~Ki~RRlG~~l~~~~~~~~~~~k~~~~~~PG~hg~~-r~K~S~Yg~qL~EKQKlr~~Yg-i~EkQf~~~~~~A   78 (205)
T 3ofo_D            1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEA   78 (205)
T ss_dssp             CCCCSCHHHHHHHTTSCCCSSCSSSCSSCSSCCSSCSSSSTTS-CCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             9656745553011798866678886556433466899978888-8862589999999999988828-8779999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHH
Q ss_conf             30334430268999998888899862121247887887624978788889413534833884788611002269999877
Q gi|254780187|r   78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS  157 (206)
Q Consensus        78 ~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~  157 (206)
                      .+++|+||++||++||+||||||||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.++.
T Consensus        79 ~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ips~~~k~gd~i~v~eks~~~~~~~~~~  158 (205)
T 3ofo_D           79 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAAL  158 (205)
T ss_dssp             HHSSSCHHHHHHHHHHHBHHHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCBCCTTCEEEECSSSCSCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             74799689999999998777898606620479999988860886509978637872536998975313351478999998


Q ss_pred             HH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             52-16899962788124318999967884211246753466316775049
Q gi|254780187|r  158 QL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       158 ~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                      +. ....+|+||++|.++|+|++++.|+++ |  +|+.+||+||||||||
T Consensus       159 ~~~~~~~~P~wL~~d~~~l~g~v~~~P~r~-~--i~~~i~e~lVvEyYSr  205 (205)
T 3ofo_D          159 ELAEQREKPTWLEVDAGKMEGTFKRKPERS-D--LSADINEHLIVELYSK  205 (205)
T ss_dssp             HHHHTSCCCSSEECCSSSCEEEECSCCCST-T--SCSSCCSTTHHHHTTC
T ss_pred             HHHCCCCCCCEEEEECCCCEEEEEECCCHH-H--CCCCCCCCEEEEECCC
T ss_conf             620548899879976523899999521789-8--8988771479985459


No 3  
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00  E-value=0  Score=500.08  Aligned_cols=198  Identities=36%  Similarity=0.543  Sum_probs=185.7

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             97644871235200588888888770001368998776544334135899999988485551565479999999875303
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS   80 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~   80 (206)
                      ||||+||++|+|||||+++|.+.+.    .+.+|++|++.+++|.|+||+||+||||+||+|| ++|+||++||++|.++
T Consensus         1 MaRy~GPk~Ki~RRlG~~~~~~~k~----~~~~~~~~~~~r~~k~S~Yg~qL~eKQKlr~~YG-i~EkQf~~~~~~a~~~   75 (201)
T 3bbn_D            1 MSRYRGPRFKKIRRLGALPGLTNKR----PRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKA   75 (201)
T ss_dssp             CCSCCSCCTTSSSSSSSCCCSSSCC----CSCCSSSCSSSCCCCCCTTHHHHTTHHHHHHHHT-CCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC
T ss_conf             9977676856620589884666777----7899987888788654489999999999999839-9789999999999855


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf             34430268999998888899862121247887887624978788889413534833884788611002269999877521
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA  160 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~  160 (206)
                      +|+||++|+++||+||||||||+|||+|+++|||||+||||+|||++||||||.|++||+|+++|++++...+.++.+..
T Consensus        76 ~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ipSy~vk~GD~I~v~eks~~~~~i~~~~~~~  155 (201)
T 3bbn_D           76 KGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLS  155 (201)
T ss_dssp             SSCTTTTTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSST
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCEEECCEEECCCCEECCCCCEEEECHHHCCHHHHHHHHHHC
T ss_conf             99779999999998767887505521577761304732784877989779987827999899732221469999999850


Q ss_pred             -CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             -6899962788124318999967884211246753466316775049
Q gi|254780187|r  161 -ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       161 -~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
                       ...+|+||++|.++++|++++.|++ +|  +|+.+||+||||||||
T Consensus       156 ~~~~~p~wl~~d~~~~~g~v~~~P~r-~~--i~~~i~e~lVVEyYSr  199 (201)
T 3bbn_D          156 PREELPKHLTLNPFPYKGLVNQIIDS-KW--VGLKINELLVVEYYSR  199 (201)
T ss_dssp             TTSCCCTTEEEETTTTEEEECSCCCG-GG--CCCSCCHHHHTTTSCC
T ss_pred             CCCCCCCEEEEECCCCEEEEECCCCH-HH--CCCCCCCCEEEEECCC
T ss_conf             54899986998744589999617865-44--8999874479997577


No 4  
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=100.00  E-value=0  Score=416.60  Aligned_cols=158  Identities=44%  Similarity=0.757  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEE
Q ss_conf             41358999999884855515654799999998753033443026899999888889986212124788788762497878
Q gi|254780187|r   44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV  123 (206)
Q Consensus        44 k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~v  123 (206)
                      |+|+||+||+||||+||+|| ++|+||++||++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|
T Consensus         2 K~S~Yg~qL~eKQK~k~~Yg-i~ekQ~~~~~~~a~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlv~Hghi~V   80 (159)
T 1c05_A            2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILV   80 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
T ss_conf             75759999999999999729-64899999999997058970899999999865677204775279999999998037070


Q ss_pred             CCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             88894135348338847886110022699998775216899962788124318999967884211246753466316775
Q gi|254780187|r  124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF  203 (206)
Q Consensus       124 ng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEy  203 (206)
                      ||++||||||+|+|||+|++++++++...+..+.+ ....+|+||++|.++++|++++.|++ +|  +|+.+||+|||||
T Consensus        81 Ngk~v~ipS~~vk~gD~I~~~~ksk~~~~i~~~~~-~~~~~P~~L~vd~~~l~g~v~~~P~r-~~--i~~~ine~lVVEy  156 (159)
T 1c05_A           81 DGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPER-SE--LPAEINEALIVEF  156 (159)
T ss_dssp             TTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCT-TT--SCSSCCSHHHHHH
T ss_pred             CCEEEEECCEECCCCCEEEECCCCCCHHHHHHHHH-CCCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEE
T ss_conf             24798525677489989873210221899999996-55778985899765589999955277-87--8988771579986


Q ss_pred             ECC
Q ss_conf             049
Q gi|254780187|r  204 YSR  206 (206)
Q Consensus       204 YSR  206 (206)
                      |||
T Consensus       157 YSR  159 (159)
T 1c05_A          157 YSR  159 (159)
T ss_dssp             HHC
T ss_pred             CCC
T ss_conf             369


No 5  
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=99.94  E-value=1.7e-28  Score=204.18  Aligned_cols=130  Identities=18%  Similarity=0.240  Sum_probs=102.0

Q ss_pred             EEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCC
Q ss_conf             12352005888888887700013689987765443341--3589999998848555156547999999987530--3344
Q gi|254780187|r    8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP--SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR--SRGD   83 (206)
Q Consensus         8 k~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~--S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~--~~g~   83 (206)
                      ..++++++|.    +     +++.+.++++..++-++.  +-++.+..++++++..|+ +.|++|+.++..+.+  ..+.
T Consensus        22 e~kl~~~yGL----~-----~k~e~~~~~~~~~~~r~~ar~l~~~~~~~~~r~~~~~~-ll~kl~~~g~~~~~~~~l~~v   91 (158)
T 3jyv_D           22 ELKLAGEFGL----K-----NKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNA-LIRRLVRVGVLSEDKKKLDYV   91 (158)
T ss_dssp             --------------------------------------CHHHHHHHTTHHHHHHCCCC-CSHHHHHHTTSSSHHHHCCSC
T ss_pred             HHHHHHHCCC----C-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCH
T ss_conf             8888652286----7-----46547422231678999999997357222089999999-999999875200112331100


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCC--EEEECCHH
Q ss_conf             30268999998888899862121247887887624978788889413534833884--78861100
Q gi|254780187|r   84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD--VIEVKQKS  147 (206)
Q Consensus        84 t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd--~I~~~~ks  147 (206)
                      ++.+++.+||+|||+||||+|||+|+.+|||||+||||+|||++||+|||+|+.||  .|++.++|
T Consensus        92 ~~~~~~~lLeRRLd~vv~r~g~a~s~~~ARqlI~HGHI~Vng~~V~iPSy~V~~~~Ed~I~~~~~S  157 (158)
T 3jyv_D           92 LALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS  157 (158)
T ss_dssp             HHHHHHHHHHHBHHHHHHHHTSSSSTTTTTHHHHTSCEEESSCCCSCTTCBCCSSSCEEECSTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCEEEECCEEECCCCEEEECCCCCEEEECCCC
T ss_conf             000689998776888999957779989998766788899999996379738425985669852899


No 6  
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=99.85  E-value=1.3e-22  Score=166.01  Aligned_cols=131  Identities=21%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             EEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH--HHHCCCCC
Q ss_conf             123520058888888877000136899877654433413589999998848555156-547999999987--53033443
Q gi|254780187|r    8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKE--ADRSRGDT   84 (206)
Q Consensus         8 k~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~-~~ekq~~~~~~~--A~~~~g~t   84 (206)
                      ..|+++++|..    .|..+.+-...-     ++-++.+.+...|.+++..+..+|. +.++.++..+-.  +....+.+
T Consensus         9 E~kl~~~YGLk----nKrE~~k~~~~l-----~kiRk~ar~L~~l~~~~~~r~~~~~~Ll~kL~~~Gil~~~~~~l~~vl   79 (179)
T 1s1h_D            9 ELKLAGEFGLK----NKKEIYRISFQL-----SKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVL   79 (179)
T ss_dssp             HHHHTSCCCSS----SCCCCCCSSCSS-----SCCCCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSSSBHHHHH
T ss_pred             HHHHHHHHCCC----CCHHHHHHHHHH-----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             99999997888----538999999999-----999999999866874420799999999999998466354321044554


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHH
Q ss_conf             026899999888889986212124788788762497878888941353483388--478861100
Q gi|254780187|r   85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKS  147 (206)
Q Consensus        85 ~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ks  147 (206)
                      +.++..+||+|||++|||+|||+|+.+|||||+||||+|||++||+|||+|++|  |.|++.++|
T Consensus        80 ~l~v~~~lerRL~~~v~r~~~a~s~~~Arq~I~hghi~v~~~~v~~Ps~~v~~~~E~~i~~~~~S  144 (179)
T 1s1h_D           80 ALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS  144 (179)
T ss_dssp             HCSSSSSGGGBHHHHHHHHTSSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTTEECCBCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEECCCCEEEECCCCCEEEEECCC
T ss_conf             20389999888999999936668899999997547635899895248658415884537642699


No 7  
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69  E-value=3.4e-18  Score=137.28  Aligned_cols=59  Identities=24%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHHHHH
Q ss_conf             99888889986212124788788762497878888941353483388--478861100226
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKSKQL  150 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ksk~~  150 (206)
                      -++|||++|||+|||.|+.+|||||.||||+|||++|++|||+|+.+  |.|++.++|+..
T Consensus         6 ~~RRLd~il~r~~fa~S~~~ARqlI~HghI~Vng~~V~~Ps~lV~~~~Ed~It~~~~Ski~   66 (71)
T 2cqj_A            6 SGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS   66 (71)
T ss_dssp             CEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC
T ss_pred             HHCCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEEECCCCCCEEEEECCCCCC
T ss_conf             2301378998826537899999997669599999996579769538988769996788677


No 8  
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6
Probab=98.84  E-value=2.6e-10  Score=86.19  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             89999988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        88 ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +..-.+.|||.+|.++|||+|+.+|+++|.+|+|.|||+.++.|++.+.+||+|++..+
T Consensus        15 l~~~~~irL~k~L~~~g~~~Sr~eAk~lI~~G~V~VNG~~v~~p~~~v~~gD~V~vdg~   73 (79)
T 1p9k_A           15 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH   73 (79)
T ss_dssp             CCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred             CCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCE
T ss_conf             49997197999998778836899999999849979899992778879899999999999


No 9  
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.74  E-value=8.3e-09  Score=76.40  Aligned_cols=54  Identities=26%  Similarity=0.326  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             9888889986212124788788762497878888941353483388478861100
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
                      .+|||..|..++|+.|+..|.++|..|+|.|||+.+ .||+.|++||+|+|.-..
T Consensus         8 ~mRlD~~L~~~r~~KtRs~A~~~i~~G~V~vNg~~~-K~s~~v~~gD~i~i~~~~   61 (133)
T 1dm9_A            8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN   61 (133)
T ss_dssp             CCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred             CEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEC-CCCCCCCCCCEEEEEECC
T ss_conf             686389998716250499999999869479899646-766668899989998689


No 10 
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.48  E-value=1.5e-08  Score=74.73  Aligned_cols=51  Identities=25%  Similarity=0.327  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             8888899862121247887887624978788889413534833884788611
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ||||..|.+.++..||..|+++|..|+|.|||+.+ .||+.|++||+|++.-
T Consensus         1 mRlDk~L~~~~~~~SRs~~~~lI~~G~V~vng~~~-k~s~~V~~Gd~i~i~~   51 (92)
T 2k6p_A            1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHY   51 (92)
T ss_dssp             CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECC
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEE-EECCEECCCCEEEEEE
T ss_conf             97789998737737999999999889289799997-5236827999999983


No 11 
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311}
Probab=98.38  E-value=4.8e-07  Score=64.98  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCE--EECCEEEECCCEEECCCCEEEECC
Q ss_conf             8888899862121247887887624978--788889413534833884788611
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i--~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .|||..|+..|++.||.+|+.+|..|.|  .|||++++.||+.|.++|.|++..
T Consensus         7 ~RLD~~Lv~~gl~~SR~~A~~lI~~G~V~~~Vng~~v~Kps~~v~~~~~i~v~~   60 (291)
T 3hp7_A            7 ERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG   60 (291)
T ss_dssp             EEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf             679999997848114999999998599524209989468867879999899947


No 12 
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=98.22  E-value=1.1e-06  Score=62.71  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             88888998621212478878876249787888894135348338847886110
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +|||-.+-..+. .|+.+|..+|..|.|.|||+.|+.|++.|.+||.|.+..+
T Consensus         4 iRLdk~Ls~~~~-~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~   55 (234)
T 1ksk_A            4 MRLDKFIAQQLG-VSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN   55 (234)
T ss_dssp             EEHHHHHHHHHT-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred             CHHHHHHHHCCC-CCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC
T ss_conf             229999987789-6899999999889599999995678858177666885031


No 13 
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.10  E-value=3e-06  Score=59.83  Aligned_cols=51  Identities=22%  Similarity=0.417  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             88888998621212478878876249787888894135348338847886110
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      .|||-+|-++|+| |+.+|.+||..|.|.|||++|+ +++.|.+||.|++..+
T Consensus         7 iRL~K~La~~g~~-SRr~ae~lI~~GrV~VNGkvv~-~~~kV~~~D~I~vdg~   57 (290)
T 3dh3_A            7 VRLNKYISESGIC-SRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQ   57 (290)
T ss_dssp             EEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTE
T ss_pred             CCHHHHHHHCCCC-HHHHHHHHHHCCEEEECCEECC-CCCCCCCCCEEEECCE
T ss_conf             2599999877884-2999999997796998999957-9889799998999999


No 14 
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=97.98  E-value=6e-06  Score=57.89  Aligned_cols=53  Identities=25%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      -+|||..+-..+ ..|+.+|+++|..|.|.|||++|+.|++.|.+||.|.+.++
T Consensus         2 ~mRLdkfLs~~~-~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~   54 (243)
T 1vio_A            2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE   54 (243)
T ss_dssp             CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred             CHHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC
T ss_conf             568999999877-85899999999789099999990549968488787995486


No 15 
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=97.25  E-value=3.5e-05  Score=52.86  Aligned_cols=53  Identities=17%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             98888899862121247887887624978788889413534833884788611
Q gi|254780187|r   93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -+|||.++-+.-=--|+..++++|..|.|.|||++++.|++.|++||.|.+..
T Consensus        16 G~RLD~~L~~~~~~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~   68 (325)
T 1v9f_A           16 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA   68 (325)
T ss_dssp             -----------------------------------------------------
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECC
T ss_conf             86799999986687799999999986998999999378541656999999826


No 16 
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.61  E-value=0.0035  Score=39.91  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             88899862121247887887624978788889413534833884788611002
Q gi|254780187|r   96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus        96 LD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      |-.++..+|+++|..+||++|..|-|.|||.+|+-|.+.+..++.+-++-..|
T Consensus       371 l~dll~~~gl~~SksEaRRlI~~ggv~IN~~ki~d~~~~i~~~~~~ilr~GKk  423 (432)
T 1h3f_A          371 VARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKD  423 (432)
T ss_dssp             HHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETTT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEEECCC
T ss_conf             99999985997778999999983998989999438770425898389985585


No 17 
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.53  E-value=0.0026  Score=40.78  Aligned_cols=43  Identities=23%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             HHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEEC
Q ss_conf             6212124788788762497878888941353483388478861
Q gi|254780187|r  102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       102 r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      ++++|.|..+|+.++..|.|.|||+..+-+.|.+-.-|+||+.
T Consensus        17 ~Lk~A~t~rEak~Il~~~~V~VDGkvr~d~k~PvGlmDVisi~   59 (213)
T 3kbg_A           17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN   59 (213)
T ss_dssp             HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEET
T ss_pred             HHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEC
T ss_conf             5341265799999986893898999964489987437899978


No 18 
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.42  E-value=0.015  Score=35.80  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             HHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCE
Q ss_conf             8998621212478878876249787888894135348338847
Q gi|254780187|r   98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV  140 (206)
Q Consensus        98 ~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~  140 (206)
                      .++..+|+++|..+||.||..|-|.|||.+|+-|.+.+...|.
T Consensus       360 dLLv~~gL~~SksEARRLI~qGgV~IN~~kI~d~~~~l~~~d~  402 (432)
T 2jan_A          360 DLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDF  402 (432)
T ss_dssp             HHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGS
T ss_pred             HHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCCHHHH
T ss_conf             9999828977899999999919899899981694331378781


No 19 
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.68  E-value=0.0045  Score=39.20  Aligned_cols=46  Identities=22%  Similarity=0.286  Sum_probs=41.5

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEE
Q ss_conf             8889986212124788788762497878888941353483388478
Q gi|254780187|r   96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI  141 (206)
Q Consensus        96 LD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I  141 (206)
                      +=.++..+|+++|..+||.+|..|-|.|||.+|+-|.+.+.+.|.+
T Consensus       355 l~dlL~~~gL~~SksEARRLI~qGgV~IN~~ki~D~~~~l~~~~~~  400 (420)
T 1jil_A          355 IVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI  400 (420)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHCC
T ss_conf             9999998498677999999998499899999804854512776704


No 20 
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.24  E-value=0.0066  Score=38.16  Aligned_cols=47  Identities=17%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEE
Q ss_conf             88889986212124788788762497878888941353483388478
Q gi|254780187|r   95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI  141 (206)
Q Consensus        95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I  141 (206)
                      -|-.++..+|+++|..+||.+|..|-|.|||++|+-|.+.+...|.+
T Consensus       353 ~l~dlL~~~gl~~SksEARRLI~qGgV~INg~kI~D~~~~i~~~~~l  399 (419)
T 2ts1_A          353 PLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL  399 (419)
T ss_dssp             -----------------------------------------------
T ss_pred             CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCHHHCC
T ss_conf             69999998599778999999998699898999923832212775604


No 21 
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, SGC, transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2
Probab=80.68  E-value=1.3  Score=23.18  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=23.5

Q ss_pred             HHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             624978788889413534833884788611
Q gi|254780187|r  116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       116 v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -+-+.+.|||++|+-| ..++.||.|.+=.
T Consensus        68 ~s~~gt~VNg~~i~~~-~~L~~GD~I~~G~   96 (104)
T 2g1l_A           68 CEGAETYVNGKLVTEP-LVLKSGNRIVMGK   96 (104)
T ss_dssp             CTTCCEEETTEECCSC-EECCTTCEEEETT
T ss_pred             CCCCCEEECCEECCCC-EECCCCCEEEECC
T ss_conf             9888719999490521-8989999999899


No 22 
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=79.79  E-value=1.5  Score=22.79  Aligned_cols=28  Identities=21%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEEC
Q ss_conf             2497878888941353483388478861
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      ..|.|.+||++++-....++.||++.+.
T Consensus       133 ~~g~vY~Ng~kv~~~~~~l~~GD~l~i~  160 (238)
T 1wv3_A          133 KNTDVYINYELQEQLTNKAYIGDHIYVE  160 (238)
T ss_dssp             TTCCEEETTEECCSSEEEEETTCEEEET
T ss_pred             CCCCEEECCEEEECCCCCCCCCCEEEEC
T ss_conf             8997889999940461102589999999


No 23 
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=76.68  E-value=1.9  Score=22.20  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             4978788889413534833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -.-+.|||++|..-.+.|+.||+|.+-+
T Consensus        86 ~nGt~VNg~~i~~~~~~L~~GD~I~iG~  113 (151)
T 2jqj_A           86 RNGTFINGNRLVKKDYILKNGDRIVFGK  113 (151)
T ss_dssp             SSCEEETTEECCSSCEEECSSEEEEETT
T ss_pred             CCCCEECCEECCCCCEECCCCCEEEECC
T ss_conf             7803799999258865999998999899


No 24 
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=72.16  E-value=1.4  Score=23.08  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC
Q ss_conf             3443026899999888889986212124788788762497878888941---3534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~  145 (206)
                      .|.|...++..|..+.-      +++..+....++-.|=.|.|||+.+.   -.+..+++||.|.+-+
T Consensus        21 eg~TV~eLl~~L~~~yP------~l~~~Lld~~~lr~~v~V~VNge~I~~~~g~dt~L~dgDEVailP   82 (168)
T 1v8c_A           21 PGATVGEVLENLVRAYP------ALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP   82 (168)
T ss_dssp             CCSBHHHHHHHHHHHCG------GGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHCC------CHHHHHCCCCCCHHHEEEEECCEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             78889999999987766------224442122130020599984766314568885569999999979


No 25 
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consortium, SGC, ATP-binding, coiled coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=71.72  E-value=3.6  Score=20.41  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             24978788889413534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      +.+.+.|||..|+-| ..|+.||+|.+=+
T Consensus        88 s~~~t~vNG~~i~~~-~~L~~GD~I~iG~  115 (124)
T 3fm8_A           88 KNTRTFVNGSSVSSP-IQLHHGDRILWGN  115 (124)
T ss_dssp             TTCCEEETTEECCSC-EEECTTCEEEETT
T ss_pred             CCCCEEECCCEECCC-EECCCCCEEEECC
T ss_conf             998678788695544-7999999999899


No 26 
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.75  E-value=1.1  Score=23.64  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             4978788889413---534833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      +=.|+|||+.++.   .++.|++||.|++=+
T Consensus        67 ~i~VlVNg~~i~~l~gldt~L~dgDeV~~~p   97 (110)
T 2k9x_A           67 GILVLVNSCDAEVVGGMDYVLNDGDTVEFIS   97 (110)
T ss_dssp             TEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred             CEEEEECCEECCCCCCCCCCCCCCCEEEEEC
T ss_conf             6799999928436888663839969999968


No 27 
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, SGR167A, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=69.19  E-value=3.5  Score=20.50  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             24978788889413534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      +-.-+.|||++|.  ...|+.||+|.+-+
T Consensus        80 S~NGt~vNg~~i~--~~~L~~GD~I~iG~  106 (131)
T 3hx1_A           80 SVNGLMINGKKVQ--EHIIQTGDEIVMGP  106 (131)
T ss_dssp             CSSCEEETTEEES--EEECCTTCEEECST
T ss_pred             CCCCEEECCEECC--CEECCCCCEEEECC
T ss_conf             6353059999986--17899999999899


No 28 
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=65.93  E-value=2.8  Score=21.08  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=26.0

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             4978788889413534833884788611002
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      .-++.-||+..++|+-.|.+||+|.+++...
T Consensus        13 ~a~V~rdg~~~~i~~~~l~~GDiv~v~~Gd~   43 (113)
T 2hc8_A           13 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEK   43 (113)
T ss_dssp             EEEEEETTEEEEEEGGGCCTTCEEEECTTCB
T ss_pred             EEEEEECCEEEEEEHHHCCCCCEEEECCCCE
T ss_conf             8999999999999999976699999889999


No 29 
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium leptum dsm 753}
Probab=65.47  E-value=3.4  Score=20.52  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=19.8

Q ss_pred             EEECCEEEECCCEEECCCCEEEECC
Q ss_conf             8788889413534833884788611
Q gi|254780187|r  121 VLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       121 i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ..|||+.+. +++.|+.||+|+|-.
T Consensus        44 akING~~v~-l~~~L~~GD~VeIiT   67 (78)
T 3hvz_A           44 AKVDGRIVP-IDYKVKTGEIIDVLT   67 (78)
T ss_dssp             EEETTEEEC-TTCBCCTTCBEEEEE
T ss_pred             EEECCEECC-CCCCCCCCCEEEEEE
T ss_conf             699999999-988769999999997


No 30 
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=65.02  E-value=4.1  Score=20.02  Aligned_cols=15  Identities=13%  Similarity=0.200  Sum_probs=8.0

Q ss_pred             CEEEECCCCCEEEEE
Q ss_conf             627881243189999
Q gi|254780187|r  166 EYISVNHDNMVATFV  180 (206)
Q Consensus       166 ~wLevd~~~l~g~v~  180 (206)
                      .|.=.|.....|+++
T Consensus       338 ~~~~~dl~S~ngt~v  352 (388)
T 2ff4_A          338 NYVINDLRSSNGVHV  352 (388)
T ss_dssp             CEEEEECSCSSCCEE
T ss_pred             EEEEEECCCCCCCEE
T ss_conf             799997989998249


No 31 
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.06  E-value=4.7  Score=19.62  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             HCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             24978788889413534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      +-+.+.|||++|. ....|+.||.|.+-.
T Consensus        78 s~~~t~VNG~~I~-~~~~L~~GD~I~~G~  105 (130)
T 2eh0_A           78 ERSETYVNGKRVS-QPVQLRSGNRIIMGK  105 (130)
T ss_dssp             SSSCEEETTEECC-SCEECCTTCBCEESS
T ss_pred             CCCCEEECCEECC-CCEECCCCCEEEECC
T ss_conf             9898489998967-637999999999899


No 32 
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=61.63  E-value=4.1  Score=20.03  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEECCEEEECCCEEECCCCEEEEC
Q ss_conf             878888941353483388478861
Q gi|254780187|r  121 VLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       121 i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      ..|||+.+. .++.|+.||+|+|-
T Consensus        39 A~ING~~~~-L~~~L~~GD~VeIi   61 (73)
T 2kmm_A           39 AKVNHKLVP-LSYVLNSGDQVEVL   61 (73)
T ss_dssp             EEETTEECC-TTCBCCSSSBEEEE
T ss_pred             EEECCEECC-CCCCCCCCCEEEEE
T ss_conf             788999999-88885899999999


No 33 
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=61.18  E-value=4.4  Score=19.81  Aligned_cols=57  Identities=19%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             3443026899999888-----8899862121247887887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRL-----DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RL-----D~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .|.|...|+..|..+.     +..++-        ..-++-.+=.|+|||.-+..   ..+.|+.||.|++-+
T Consensus        30 ~~~Tv~~Ll~~L~~~~~~~~~~~~~~~--------~~~~lr~~i~v~vN~~di~~l~gl~t~l~~gD~V~i~p   94 (99)
T 2qjl_A           30 DPVTVGDLIDHIVSTMINNPNDVSIFI--------EDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS   94 (99)
T ss_dssp             SCCBHHHHHHHHHHHTCSSGGGHHHHE--------ETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHHHH--------CCCCCCCCEEEEECCCEEEECCCCCCCCCCCCEEEEEC
T ss_conf             997899999999987553225554330--------13564452799989926350578674869979999968


No 34 
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A
Probab=60.44  E-value=3.3  Score=20.65  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
Q ss_conf             4978788889413534833884788611002269999877521689996278812431899
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT  178 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~  178 (206)
                      +-.|.-||+.+.||+-.|.|||+|.+++...- +.-...   .+.   .-+.||...|+|.
T Consensus       178 ~~~ViRdG~~~~I~~~~Lv~GDIV~l~~Gd~i-PaD~~l---l~~---~~l~VdeS~LTGE  231 (1034)
T 3ixz_A          178 QATVIRDGDKFQINADQLVVGDLVEMKGGDRV-PADIRI---LQA---QGRKVDNSSLTGE  231 (1034)
T ss_pred             EEEEEECCEEEEEEHHHCCCCCEEEECCCCEE-EEEEEE---EEE---CCCEEECCCCCCC
T ss_conf             66999999999988899798988999997999-770499---984---6925670415578


No 35 
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens}
Probab=59.86  E-value=5  Score=19.46  Aligned_cols=29  Identities=7%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             CCCEEECCEEEEC-CCEEECCCCEEEECCH
Q ss_conf             4978788889413-5348338847886110
Q gi|254780187|r  118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQK  146 (206)
Q Consensus       118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~k  146 (206)
                      -.-..|||+.+.. -++.|+.||+|++-..
T Consensus        63 ~NGt~vng~~l~~~~~~~L~~GD~i~l~~~   92 (102)
T 3kt9_A           63 VNPTSIDSVVIGKDQEVKLQPGQVLHMVNE   92 (102)
T ss_dssp             SSCCEETTEECCBTCEEEECTTCCEEEETT
T ss_pred             CCCEEECCEEECCCCCCCCCCCCEEEEECC
T ss_conf             886689998957896005799999999188


No 36 
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=59.20  E-value=4.8  Score=19.57  Aligned_cols=26  Identities=12%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEEC
Q ss_conf             497878888941353483388478861
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVK  144 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~  144 (206)
                      -+.+.|||+.|.-+ ..|+.||.|.+=
T Consensus        79 ~~~t~VNG~~v~~~-~~L~~gD~I~~G  104 (120)
T 1wln_A           79 DAETYVDGQRISET-TMLQSGMRLQFG  104 (120)
T ss_dssp             SSCEEETSCBCSSC-EEECTTCEEEET
T ss_pred             CCCEEECCCEECCE-EECCCCCEEEEC
T ss_conf             98528888795732-698999999989


No 37 
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=58.22  E-value=4.8  Score=19.56  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=21.0

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             978788889413534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .-+.|||++|+.+ ..|+.||+|.+-+
T Consensus        75 ngt~vNg~~v~~~-~~L~~Gd~i~iG~  100 (128)
T 1r21_A           75 NPTQVNGSVIDEP-VRLKHGDVITIID  100 (128)
T ss_dssp             SCCEETTEECSSC-EECCTTEEEECSS
T ss_pred             CCEEECCEECCCC-EECCCCCEEEECC
T ss_conf             6489999898873-6999999999989


No 38 
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=57.06  E-value=5  Score=19.47  Aligned_cols=52  Identities=17%  Similarity=0.305  Sum_probs=33.3

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
Q ss_conf             78788889413534833884788611002269999877521689996278812431899
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT  178 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~  178 (206)
                      .|.-||+.+.+|+-.+.|||+|.+++...- +.  +. ...+.   .-+.||.+.|+|.
T Consensus       175 ~ViRdG~~~~I~~~~Lv~GDIV~l~~G~~i-Pa--D~-~ll~g---~~~~VdeS~LTGE  226 (1028)
T 2zxe_A          175 LVIRDGEKSTINAEFVVAGDLVEVKGGDRI-PA--DL-RIISA---HGCKVDNSSLTGE  226 (1028)
T ss_dssp             EEEETTEEEEEEGGGCCTTCEEEEETTCBC-CS--EE-EEEEE---EEEEEECHHHHSC
T ss_pred             EEEECCEEEEEEHHHCCCCCEEEECCCCEE-EE--EE-EEEEE---CCEEEECHHHCCC
T ss_conf             999999999988899894998999998999-64--07-99985---6748982021079


No 39 
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D}
Probab=56.87  E-value=5  Score=19.46  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             78788889413534833884788611
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .+.|||+.|.- ...|++||+|.+-+
T Consensus        70 Gt~vNg~~v~~-~~~L~~gd~i~iG~   94 (106)
T 3gqs_A           70 GVIVEGRKIEH-QSTLSANQVVALGT   94 (106)
T ss_dssp             CCEETTEECSS-EEECCTTCCEEETT
T ss_pred             CCEECCEECCC-EEECCCCCEEEECC
T ss_conf             85699999477-38999999999989


No 40 
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris}
Probab=56.28  E-value=5.1  Score=19.42  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=13.8

Q ss_pred             EEECCEEEEC---CCEEECCCCEEEE
Q ss_conf             8788889413---5348338847886
Q gi|254780187|r  121 VLVNGRSVNI---GSYRCKEGDVIEV  143 (206)
Q Consensus       121 i~vng~~v~~---ps~~~k~gd~I~~  143 (206)
                      |.|||..|..   +++.|+.||.|++
T Consensus        33 V~vN~~iVpr~~~~~~~L~egD~IEI   58 (73)
T 2kl0_A           33 VALNYDVVPRGKWDETPVTAGDEIEI   58 (73)
T ss_dssp             EEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred             EEECCEECCHHHCCCCCCCCCCEEEE
T ss_conf             99899992889938221899899999


No 41 
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=53.17  E-value=11  Score=17.22  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=22.3

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEEC
Q ss_conf             24978788889413-53483388478861
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK  144 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~  144 (206)
                      +..-+.|||+++.. -.+.|++||+|.+=
T Consensus        73 S~NGt~vNg~~l~~~~~~~L~~gD~I~iG  101 (138)
T 2pie_A           73 SLNGVWLNRARLEPLRVYSIHQGDYIQLG  101 (138)
T ss_dssp             CSSCEEETTEECCTTCCEECCTTCEEEES
T ss_pred             CCCCEEECCEECCCCCEEECCCCCEEEEC
T ss_conf             88876999999579964899999999979


No 42 
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=52.74  E-value=3.4  Score=20.53  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             344302689999988888998621212478-87887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF-AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~-~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .+.|...||..|..+...      +.+..+ ..-++-.+=.|+|||..+..   ..+.|+.||.|++-+
T Consensus        41 ~~~TV~eLl~~L~~~~~~------~~~~l~~~~g~lr~~i~VlVNg~di~~l~g~dt~LkdGDeV~~ip  103 (114)
T 1wgk_A           41 EPWDIRNLLVWIKKNLLK------ERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS  103 (114)
T ss_dssp             SCCBHHHHHHHHTTTTCC------SCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCC------HHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCEEEEEC
T ss_conf             864599999999997640------267875337876655699988934340578764669979999978


No 43 
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=52.27  E-value=6  Score=18.95  Aligned_cols=29  Identities=7%  Similarity=-0.048  Sum_probs=21.9

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             24978788889413-534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      +-+...|||+++.. ..+.|++||+|++-.
T Consensus        68 s~Ngt~vNg~~l~~~~~~~L~~GD~i~l~~   97 (110)
T 2brf_A           68 GVNPSTTGTQELKPGLEGSLGVGDTLYLVN   97 (110)
T ss_dssp             SSSCCEEC-CBCCTTCEEEEETTCEEEEET
T ss_pred             CCCCEEECCEECCCCCCCCCCCCCEEEECC
T ss_conf             878519999990689502879999999978


No 44 
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3dwm_A
Probab=51.09  E-value=8.7  Score=17.89  Aligned_cols=63  Identities=22%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC
Q ss_conf             33443026899999888889986212124788788762497878888941---3534833884788611
Q gi|254780187|r   80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~  145 (206)
                      ..|.|..-++..|+.+--...-.+-+..+-   -++-.|=.|.|||+.+.   -+...|++||.|.+=+
T Consensus        23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~---g~l~~~v~v~vn~~~i~~~~~~~~~l~~gdeV~i~P   88 (93)
T 3dwg_C           23 ASGDTLGAVISDLEANYSGISERLMDPSSP---GKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP   88 (93)
T ss_dssp             ECCSBHHHHHHHHHHHSTTHHHHHBCSSST---TSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred             ECCCCHHHHHHHHHHHCCHHHHHHHHCCCC---CCCCCEEEEEECCHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf             478889999999986780899997521124---441121799988711003357566489999999968


No 45 
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=50.98  E-value=4.7  Score=19.61  Aligned_cols=53  Identities=15%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
Q ss_conf             78788889413534833884788611002269999877521689996278812431899
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT  178 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~  178 (206)
                      .|.-||+.+.+|+-.|.|||+|.+++...- +.  +. .....  -..|+||...++|.
T Consensus       181 ~ViRdG~~~~I~~~eLv~GDiV~l~~G~~V-Pa--Dg-~li~g--~~~l~VDeS~LTGE  233 (920)
T 1mhs_A          181 VVLRDGTLKEIEAPEVVPGDILQVEEGTII-PA--DG-RIVTD--DAFLQVDQSALTGE  233 (920)
T ss_dssp             EEECSSSEEECCTTTSCTTSEEEECTTCBC-SS--EE-EEEEE--SSCCEEBCTTTSSC
T ss_pred             EEEECCEEEEEEHHHCCCCCEEEECCCCEE-EE--EE-EEEEC--CCCEEEECCCCCCC
T ss_conf             999999999988899891888999999999-31--59-99977--50117787444478


No 46 
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=48.36  E-value=13  Score=16.72  Aligned_cols=29  Identities=17%  Similarity=0.159  Sum_probs=22.5

Q ss_pred             HCCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             249787888894135-34833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      +-.-+.|||+++..- ...|+.||.|++-.
T Consensus       101 StNGT~vN~~~l~~~~~~~L~~GD~I~lg~  130 (149)
T 1gxc_A          101 SGNGTFVNTELVGKGKRRPLNNNSEIALSL  130 (149)
T ss_dssp             CSSCEEETTEECCTTCEEECCTTEEEEESS
T ss_pred             CCCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf             968856999991699878889999999798


No 47 
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown function; NMR {Pyrococcus furiosus dsm 3638} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=47.91  E-value=6  Score=18.97  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             78788889413534833884788611
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -|.|||..+. ++..|++||.|++-+
T Consensus        48 ~VavNg~~v~-~d~~l~dgDeV~i~p   72 (77)
T 1rws_A           48 IAKVNGKVVL-EDDEVKDGDFVEVIP   72 (77)
T ss_dssp             CEEETTEEEC-SSSCCCSSCCCBCSC
T ss_pred             EEEECCEECC-CCCCCCCCCEEEEEE
T ss_conf             9998999968-984879999999990


No 48 
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=47.91  E-value=7.8  Score=18.20  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=18.5

Q ss_pred             CEEECCEEEEC---CCEEECCCCEEEEC
Q ss_conf             78788889413---53483388478861
Q gi|254780187|r  120 HVLVNGRSVNI---GSYRCKEGDVIEVK  144 (206)
Q Consensus       120 ~i~vng~~v~~---ps~~~k~gd~I~~~  144 (206)
                      -|.|||..|..   +++.++.||.|++-
T Consensus        33 av~vN~~ivpr~~~~~~~L~~gD~IeIv   60 (66)
T 1f0z_A           33 ALAINQQIVPREQWAQHIVQDGDQILLF   60 (66)
T ss_dssp             EEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred             EEEECCEECCHHHHHHCCCCCCCEEEEE
T ss_conf             9999999848789423348997999999


No 49 
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=47.85  E-value=12  Score=17.02  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC
Q ss_conf             34430268999998888899862121247887887624978788889413---534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~  145 (206)
                      .+.|...++..|+.+.....-++-+     ..-++..+=.|.|||+-+..   ....|+.||.|.+=+
T Consensus        23 ~~~Tv~~ll~~L~~~~p~~~~~~~~-----~~~~l~~~v~v~vNg~~i~~~~~~~t~l~dgDeV~i~P   85 (90)
T 2g1e_A           23 GISKISELLERLKVEYGSEFTKQMY-----DGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP   85 (90)
T ss_dssp             SCCBHHHHHHHHHHHSCHHHHHHHC-----CSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHCHHHHHHHHH-----HHCCHHHEEEEEECCEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             9998999999998678088999864-----12020020799885887044456565379999999978


No 50 
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=46.28  E-value=12  Score=17.07  Aligned_cols=29  Identities=17%  Similarity=0.021  Sum_probs=22.2

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             24978788889413-534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      +-.-..|||..+.. -.+.|++||+|.|-.
T Consensus        68 ssNGT~vNg~~l~~g~~~~L~~GD~i~lg~   97 (143)
T 1yj5_C           68 GVNPSTVGVHELKPGLSGSLSLGDVLYLVN   97 (143)
T ss_dssp             SSSCCEETTEECCTTCEEEECTTCEEESSS
T ss_pred             CCCCCEECCEEECCCCEEECCCCCEEEEEC
T ss_conf             867747999996347517768999999945


No 51 
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=45.73  E-value=9.7  Score=17.58  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             978788889413534833884788611
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .-+.|||+.+.  ...|+.||+|.|-+
T Consensus       117 nGt~vNg~~v~--~~~L~~GD~i~iG~  141 (162)
T 2kfu_A          117 NGTYVNREPVD--SAVLANGDEVQIGK  141 (162)
T ss_dssp             SCEEETTBCCS--EEECCSSCEEEETT
T ss_pred             CCCEECCEECC--CEECCCCCEEEECC
T ss_conf             75189999996--24899999999999


No 52 
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=45.73  E-value=15  Score=16.39  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=15.8

Q ss_pred             HCCCEEECCEEE-------------ECCCEEECCCCEEEEC
Q ss_conf             249787888894-------------1353483388478861
Q gi|254780187|r  117 NHRHVLVNGRSV-------------NIGSYRCKEGDVIEVK  144 (206)
Q Consensus       117 ~hg~i~vng~~v-------------~~ps~~~k~gd~I~~~  144 (206)
                      +.++|++||+++             |++. .+++||.|++=
T Consensus       293 ~~~~V~i~g~~~pivGrvsMD~~~vDv~~-~~~vGD~V~l~  332 (388)
T 1bd0_A          293 QHFHVLVDGQKAPIVGRICMDQCMIRLPG-PLPVGTKVTLI  332 (388)
T ss_dssp             GGCEEEETTEEEEEESCCCSSCEEEECSS-CCCTTCEEEEE
T ss_pred             CCCEEEECCEEEEEEEEEECCEEEEECCC-CCCCCCEEEEE
T ss_conf             79889999998058628713718998899-99999999998


No 53 
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=45.71  E-value=10  Score=17.38  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=17.4

Q ss_pred             EEECCEEEE---CCCEEECCCCEEEEC
Q ss_conf             878888941---353483388478861
Q gi|254780187|r  121 VLVNGRSVN---IGSYRCKEGDVIEVK  144 (206)
Q Consensus       121 i~vng~~v~---~ps~~~k~gd~I~~~  144 (206)
                      |.|||..|.   -.++.|+.||.|++-
T Consensus        37 VevN~~iV~r~~w~~~~L~~gD~IEIv   63 (78)
T 2k5p_A           37 VELNGEVLEREAFDATTVKDGDAVEFL   63 (78)
T ss_dssp             EEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred             EEECCEECCHHHHCCCCCCCCCEEEEE
T ss_conf             999999918788071358996999999


No 54 
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=44.89  E-value=12  Score=17.10  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             HCCCEEECCEEEECCC---------EEECCCCEEEECC
Q ss_conf             2497878888941353---------4833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIGS---------YRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~ps---------~~~k~gd~I~~~~  145 (206)
                      +..-..|||++|..+.         +.|+.||+|.+-+
T Consensus        74 S~NGT~vNg~~i~~~~~~~~~~~~~~~L~~gD~I~lG~  111 (139)
T 1mzk_A           74 SLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT  111 (139)
T ss_dssp             CSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS
T ss_pred             CCCCCEECCEECCCCCCCCCCCCCEEECCCCCEEEECC
T ss_conf             66870899999746444545789868879999999799


No 55 
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=44.50  E-value=12  Score=16.89  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=16.5

Q ss_pred             CEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             78788889413534833884788611
Q gi|254780187|r  120 HVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       120 ~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      -+.|||+.+.  ...|+.||+|.|-+
T Consensus       109 Gt~vNg~~i~--~~~L~~gD~i~iG~  132 (143)
T 2kb3_A          109 GTYVNREPRN--AQVMQTGDEIQIGK  132 (143)
T ss_dssp             CCEETTEECS--EEECCTTEEEEETT
T ss_pred             CEEECCEECC--CEECCCCCEEEECC
T ss_conf             6089999996--37999999999999


No 56 
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=44.19  E-value=16  Score=16.24  Aligned_cols=49  Identities=18%  Similarity=0.133  Sum_probs=33.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             34430268999998888899862121247887887624978788889413534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .|.|...|+..|..+-.      .+..         .+=.+.||++.++ ..+.++.||.|.+=|
T Consensus        24 ~~~tv~~l~~~L~~~~~------~~~~---------~~~~vavN~~~~~-~~~~l~dgDeVa~~P   72 (77)
T 2q5w_D           24 QALTVQQFEDLLFERYP------QINN---------KKFQVAVNEEFVQ-KSDFIQPNDTVALIP   72 (77)
T ss_dssp             SCEEHHHHHHHHHHHCG------GGTT---------CCCEEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHCC------CCCC---------EEEEEEECCEECC-CCCEECCCCEEEEEC
T ss_conf             99989999999998769------5666---------1599998997979-995309979999979


No 57 
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=44.15  E-value=15  Score=16.43  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECCHHH
Q ss_conf             24978788889413-534833884788611002
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ksk  148 (206)
                      +..-..|||.++.- -.+.|+.||+|.+-.-++
T Consensus       115 S~nGt~vNg~~i~~~~~~~L~~GD~i~~G~~~~  147 (158)
T 3els_A          115 SSNGTCLNNVVIPGARYIELRSGDVLTLSEFEE  147 (158)
T ss_dssp             CSSCCEETTEECCTTCCEECCTTEEEESSSCGG
T ss_pred             CCCEEEECCEECCCCCEEECCCCCEEEECCCCC
T ss_conf             998057999998899668879999999897566


No 58 
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=43.90  E-value=16  Score=16.21  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEEC
Q ss_conf             24978788889413-53483388478861
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK  144 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~  144 (206)
                      +.....|||+++.. -++.|..||+|.+=
T Consensus       105 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG  133 (164)
T 1g3g_A          105 STNGTWLNGQKVEKNSNQLLSQGDEITVG  133 (164)
T ss_dssp             CSSCEEETTEEECTTEEEECCTTCEEEES
T ss_pred             CCCCEEECCEEECCCCEEECCCCCEEEEC
T ss_conf             97543899999069986887899999988


No 59 
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=42.61  E-value=15  Score=16.33  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEEC
Q ss_conf             24978788889413-53483388478861
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK  144 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~  144 (206)
                      +-.-..|||..+.. -.+.|+.||+|.+-
T Consensus        77 S~nGT~vNg~~i~~~~~~~L~~GD~I~iG  105 (127)
T 1g6g_A           77 STNGTWLNGQKVEKNSNQLLSQGDEITVG  105 (127)
T ss_dssp             CSSCCEETTEECCTTCCEECCTTCEEEEC
T ss_pred             CCCCEEECCEEECCCCEEECCCCCEEEEC
T ss_conf             75464999999069986994899999989


No 60 
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, biosynthetic protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=42.39  E-value=15  Score=16.33  Aligned_cols=11  Identities=27%  Similarity=0.513  Sum_probs=6.6

Q ss_pred             EEECCEEEECC
Q ss_conf             87888894135
Q gi|254780187|r  121 VLVNGRSVNIG  131 (206)
Q Consensus       121 i~vng~~v~~p  131 (206)
                      |.|||+.+.++
T Consensus        23 I~vNGk~~~~~   33 (87)
T 1tyg_B           23 LQLNGKDVKWK   33 (87)
T ss_dssp             EEETTEEECCS
T ss_pred             EEECCEEEECC
T ss_conf             99999898868


No 61 
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=42.06  E-value=11  Score=17.19  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             CCEEECCEEEEC-CCEEECCCCEEEEC
Q ss_conf             978788889413-53483388478861
Q gi|254780187|r  119 RHVLVNGRSVNI-GSYRCKEGDVIEVK  144 (206)
Q Consensus       119 g~i~vng~~v~~-ps~~~k~gd~I~~~  144 (206)
                      .-..|||.++.- -.+.|+.||+|.|=
T Consensus        83 NGt~vNg~~l~~~~~~~L~~GD~I~iG  109 (145)
T 2csw_A           83 NGVWLNRARLEPLRVYSIHQGDYIQLG  109 (145)
T ss_dssp             SCEEESSCBCCBTCCEECCSSCCEEES
T ss_pred             CCEEECCEECCCCCEEECCCCCEEEEC
T ss_conf             875999999689961799999999969


No 62 
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.68  E-value=9.7  Score=17.60  Aligned_cols=59  Identities=25%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             34430268999998888899862121247887887624978788889413534833884788611
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      .+.|...|+..|+.+-... .+.-|.    .+-.+...=.|.|||+.++ ....|+.||.|.+=|
T Consensus        35 ~~~Tv~~Ll~~L~~~~p~~-~~~l~~----~~~~~~~~v~v~vN~~~~~-~d~~L~dgDeVai~P   93 (98)
T 1vjk_A           35 EGARVRDLIEEIKKRHEKF-KEEVFG----EGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFP   93 (98)
T ss_dssp             TTCBHHHHHHHHHHHCGGG-GGSCBC----SSSCTTSSBEEEETTBCCC-TTCBCCTTCEEEEES
T ss_pred             CCCCHHHHHHHHHHHCCHH-HHHHHH----HCCCCCCCEEEEECCEECC-CCCCCCCCCEEEEEC
T ss_conf             9997999999999867157-888641----1014566479998889969-997809989999979


No 63 
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=36.87  E-value=14  Score=16.60  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             CCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             49787888894135-34833884788611
Q gi|254780187|r  118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      ...+.|||+.+... .+.|+.||+|.+-+
T Consensus        75 ~nGt~vng~~l~~~~~~~L~~Gd~i~iG~  103 (118)
T 1uht_A           75 SNGTLLNSNALDPETSVNLGDGDVIKLGE  103 (118)
T ss_dssp             SSCCEESSSBCCTTCEEECCTTEEEEETT
T ss_pred             CCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf             78847999991799778999999999999


No 64 
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=36.02  E-value=16  Score=16.23  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=23.0

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             24978788889413-534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      +..-..|||.++.. -.+.|+.||+|++-.
T Consensus       105 StNGt~vN~~~~~~~~~~~l~~gD~i~~~~  134 (182)
T 1qu5_A          105 GTNVSYLNNNRMIQGTKFLLQDGDEIKIIW  134 (182)
T ss_dssp             SSSCCEETTEECCSSEEEECCTTBCCEEEE
T ss_pred             CCCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf             878508999991799868857999999854


No 65 
>2cu3_A Unknown function protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus HB8} SCOP: d.15.3.2 PDB: 2htm_E
Probab=35.45  E-value=21  Score=15.37  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=15.1

Q ss_pred             CEEECCEEEEC---CCEEECCCCEEEE
Q ss_conf             78788889413---5348338847886
Q gi|254780187|r  120 HVLVNGRSVNI---GSYRCKEGDVIEV  143 (206)
Q Consensus       120 ~i~vng~~v~~---ps~~~k~gd~I~~  143 (206)
                      -|-||+..|..   +++.++.||.|++
T Consensus        31 aV~vN~~ivpr~~~~~~~L~~gD~IeI   57 (64)
T 2cu3_A           31 AVLLNEEAFLGLEVPDRPLRDGDVVEV   57 (64)
T ss_dssp             EEEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred             EEEECCEEECHHHCCCCCCCCCCEEEE
T ss_conf             999999990888828310899899999


No 66 
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=35.32  E-value=5.9  Score=18.97  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=22.9

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECCH
Q ss_conf             24978788889413-5348338847886110
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQK  146 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~k  146 (206)
                      +-....|||+.+.. ..+.|.+||+|++-+.
T Consensus        75 S~Ngt~vNg~~l~~~~~~~L~~GD~i~l~~~  105 (119)
T 1ujx_A           75 GVNPSTVGVQELKPGLSGSLSLGDVLYLVNG  105 (119)
T ss_dssp             SSSCCBSSSSBCCTTCEEEEETTCCCBCBTT
T ss_pred             CCCCEEECCEEECCCCEEECCCCCEEEEECC
T ss_conf             9785589679926898058489999999088


No 67 
>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} SCOP: b.18.1.16 PDB: 1oko_A* 1uoj_A 2vxj_A*
Probab=35.01  E-value=6.3  Score=18.79  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             CCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9787888894135348338847886110
Q gi|254780187|r  119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus       119 g~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      |-|..|.+-=...|..+++||+|++-.+
T Consensus         4 GsVpANaenGq~TglilkqGDiIsivA~   31 (121)
T 1l7l_A            4 GEVLANNEAGQVTSIIYNPGDVITIVAA   31 (121)
T ss_dssp             EEEETTCTTCEEEEEEECTTCCEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf             5245444479635788548989998460


No 68 
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=34.81  E-value=22  Score=15.30  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=21.5

Q ss_pred             CEEECCEEEECCC---EEECCCCEEEECCHHH
Q ss_conf             7878888941353---4833884788611002
Q gi|254780187|r  120 HVLVNGRSVNIGS---YRCKEGDVIEVKQKSK  148 (206)
Q Consensus       120 ~i~vng~~v~~ps---~~~k~gd~I~~~~ksk  148 (206)
                      .|.++|+..+.+.   ..|+|||.|+|.+...
T Consensus       158 ~V~~DG~~~~~~~G~~l~L~PGesiTI~Pg~~  189 (246)
T 3kmh_A          158 TVVIDGCRQKHTAGSQLRLSPGESICLPPGLY  189 (246)
T ss_dssp             EEEETTEEEEECTTCEEEECTTCEEEECTTEE
T ss_pred             EEECCCEEEEECCCCEEEECCCCEEECCCCCE
T ss_conf             78219969886799779878999698079980


No 69 
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=33.17  E-value=9.9  Score=17.52  Aligned_cols=29  Identities=21%  Similarity=0.197  Sum_probs=21.4

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             24978788889413-534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      +..-..|||+++.. -.+.|+.||+|.+-.
T Consensus        66 S~NGt~vNg~~i~~~~~~~L~~GD~I~lg~   95 (116)
T 1lgp_A           66 STSGTVINKLKVVKKQTCPLQTGDVIYLVY   95 (116)
T ss_dssp             SSSCCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred             CCCEEEECCEEECCCCEEECCCCCEEEEEE
T ss_conf             764169999990699868899999999941


No 70 
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=31.66  E-value=23  Score=15.18  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=23.1

Q ss_pred             HCCCEEECCEEEEC-CCEEECCCCEEEECC
Q ss_conf             24978788889413-534833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~  145 (206)
                      +-.-..|||+++.. -.+.+..||+|.+-.
T Consensus        81 StNGt~vN~~~i~~~~~~~L~~GD~I~lg~  110 (158)
T 1dmz_A           81 GTNVSYLNNNRMIQGTKFLLQDGDEIKIIW  110 (158)
T ss_dssp             STTCCEETTEECCSSEEEECCSSCCEESCC
T ss_pred             CCCCEEECCEEECCCCEEECCCCCEEEECC
T ss_conf             879848999993799828877999999832


No 71 
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=31.35  E-value=3.9  Score=20.19  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCC-CCC-CEEEECCCCCEEE
Q ss_conf             497878888941353483388478861100226999987752168-999-6278812431899
Q gi|254780187|r  118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVP-EYISVNHDNMVAT  178 (206)
Q Consensus       118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~-~~P-~wLevd~~~l~g~  178 (206)
                      .-+|.-||+.+.+|+-.+.|||+|.+++..+--         ++- -+- +-+++|...++|.
T Consensus       131 ~~~ViRdG~~~~I~~~~Lv~GDiv~l~~G~~iP---------aD~~li~g~~l~vdeS~LTGE  184 (885)
T 3b8c_A          131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIP---------ADARLLEGDPLKVDQSALTGE  184 (885)
T ss_dssp             CCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCS---------SCCCCCCSSCBCCCCCSTTCC
T ss_pred             EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEE---------EEEEEEECCCCEEECCCCCCC
T ss_conf             269999999999888998989789999979997---------469999523637985345688


No 72 
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=26.11  E-value=22  Score=15.31  Aligned_cols=29  Identities=0%  Similarity=-0.030  Sum_probs=19.8

Q ss_pred             HCCCEEECCEEEECC-CEEECCCCEEEECC
Q ss_conf             249787888894135-34833884788611
Q gi|254780187|r  117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ  145 (206)
Q Consensus       117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~  145 (206)
                      +-....|||.++..- -+.|+.||+|.|-.
T Consensus        98 S~NGT~vn~~~l~~~~~~~L~~gd~I~~G~  127 (140)
T 2jpe_A           98 STHGTFLGHIRLEPHKPQQIPIDSTVSFGA  127 (140)
T ss_dssp             CSSCEESSSCEECSSSCCEECTTCCBBCSS
T ss_pred             CCCCEEEEEEEECCCCEEECCCCCEEEECC
T ss_conf             888718902894589607989999999848


No 73 
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=23.70  E-value=29  Score=14.48  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=19.0

Q ss_pred             EEEECCCEEECCCCEEEECCHHH
Q ss_conf             89413534833884788611002
Q gi|254780187|r  126 RSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus       126 ~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      +...+|...+.+||+|.+++...
T Consensus        33 ~~~~V~~~~l~~GDii~v~~G~~   55 (124)
T 2kij_A           33 SEEQVDVELVQRGDIIKVVPGGK   55 (124)
T ss_dssp             EEEEEETTTCCTTCEEECCTTCB
T ss_pred             EEEEEEHHHCCCCCEEEECCCCE
T ss_conf             06998989978699999999999


No 74 
>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ...
Probab=23.05  E-value=22  Score=15.32  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             CCEEECCEE--EECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
Q ss_conf             978788889--413534833884788611002269999877521689996278812431899
Q gi|254780187|r  119 RHVLVNGRS--VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT  178 (206)
Q Consensus       119 g~i~vng~~--v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~  178 (206)
                      -.|..||+.  ..|++-.|.|||+|.+++...- +.  +.. ... .--.-+.||...|+|.
T Consensus       127 ~~V~R~g~~~~~~I~~~~Lv~GDIV~l~~g~~i-Pa--D~~-ll~-g~~~~l~VdeS~LTGE  183 (994)
T 1wpg_A          127 GKVYRADRKSVQRIKARDIVPGDIVEVAVGDKV-PA--DIR-ILS-IKSTTLRVDQSILTGE  183 (994)
T ss_dssp             EEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBC-CS--EEE-EEE-ECSSCCEEECHHHHSC
T ss_pred             EEEEECCCCEEEEEEHHHCCCCCEEEECCCCEE-EE--EEE-EEE-EEECCEEEECCCCCCC
T ss_conf             699999974699970899896878999898999-63--389-999-7416848887625577


No 75 
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=20.48  E-value=39  Score=13.65  Aligned_cols=29  Identities=14%  Similarity=0.182  Sum_probs=16.1

Q ss_pred             CCEEECCEEEECC-CEEECCCCEEEECCHH
Q ss_conf             9787888894135-3483388478861100
Q gi|254780187|r  119 RHVLVNGRSVNIG-SYRCKEGDVIEVKQKS  147 (206)
Q Consensus       119 g~i~vng~~v~~p-s~~~k~gd~I~~~~ks  147 (206)
                      .-..|||.++.-- .+.|+.||+|.+-..+
T Consensus       164 NGTfVNg~rI~~~~~~~L~~gD~I~fG~s~  193 (205)
T 3elv_A          164 NGTCLNNVVIPGARYIELRSGDVLTLSEFE  193 (205)
T ss_dssp             SCCEETTEECCBTSCEECCTTCEEESSSSG
T ss_pred             CCEEECCEECCCCCEEECCCCCEEEECCCC
T ss_conf             734699999689963787999999978867


No 76 
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=20.22  E-value=40  Score=13.62  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             HHHHCCCEEECCEEEECCCEEECCCCEEEECC
Q ss_conf             87624978788889413534833884788611
Q gi|254780187|r  114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ  145 (206)
Q Consensus       114 q~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~  145 (206)
                      ++|..|.=.|-++.-+-.--.+++||.|.+..
T Consensus        13 ~~I~~G~KtiE~Rl~d~k~~~ik~GD~I~F~n   44 (109)
T 2z0t_A           13 ELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEG   44 (109)
T ss_dssp             HHHHTTSCCEEEEECCTTGGGCCTTCEEEEGG
T ss_pred             HHHHCCCCEEEEEECHHHHHHCCCCCEEEEEC
T ss_conf             99876998899980426687289999999968


Done!