Query gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 206 No_of_seqs 159 out of 1658 Neff 5.4 Searched_HMMs 23785 Date Mon May 23 14:09:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780187.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2vqe_D 30S ribosomal protein S 100.0 0 0 527.6 13.3 202 1-206 1-209 (209) 2 3ofo_D 30S ribosomal protein S 100.0 0 0 518.6 12.8 200 2-206 1-205 (205) 3 3bbn_D Ribosomal protein S4; s 100.0 0 0 500.1 10.0 198 1-206 1-199 (201) 4 1c05_A Ribosomal protein S4 de 100.0 0 0 416.6 13.0 158 44-206 2-159 (159) 5 3jyv_D 40S ribosomal protein S 99.9 1.7E-28 7E-33 204.2 4.1 130 8-147 22-157 (158) 6 1s1h_D 40S ribosomal protein S 99.9 1.3E-22 5.4E-27 166.0 3.6 131 8-147 9-144 (179) 7 2cqj_A BRMS2, U3 small nucleol 99.7 3.4E-18 1.4E-22 137.3 1.7 59 92-150 6-66 (71) 8 1p9k_A ORF, hypothetical prote 98.8 2.6E-10 1.1E-14 86.2 0.1 59 88-146 15-73 (79) 9 1dm9_A Hypothetical 15.5 KD pr 98.7 8.3E-09 3.5E-13 76.4 4.9 54 93-147 8-61 (133) 10 2k6p_A Uncharacterized protein 98.5 1.5E-08 6.3E-13 74.7 0.2 51 94-145 1-51 (92) 11 3hp7_A Hemolysin, putative; st 98.4 4.8E-07 2E-11 65.0 6.0 52 94-145 7-60 (291) 12 1ksk_A Ribosomal small subunit 98.2 1.1E-06 4.5E-11 62.7 4.7 52 94-146 4-55 (234) 13 3dh3_A Ribosomal large subunit 98.1 3E-06 1.3E-10 59.8 5.0 51 94-146 7-57 (290) 14 1vio_A Ribosomal small subunit 98.0 6E-06 2.5E-10 57.9 4.7 53 93-146 2-54 (243) 15 1v9f_A Ribosomal large subunit 97.2 3.5E-05 1.5E-09 52.9 0.0 53 93-145 16-68 (325) 16 1h3f_A Tyrosyl-tRNA synthetase 96.6 0.0035 1.5E-07 39.9 5.8 53 96-148 371-423 (432) 17 3kbg_A 30S ribosomal protein S 96.5 0.0026 1.1E-07 40.8 4.7 43 102-144 17-59 (213) 18 2jan_A Tyrosyl-tRNA synthetase 96.4 0.015 6.4E-07 35.8 8.0 43 98-140 360-402 (432) 19 1jil_A Tyrrs, tyrosyl-tRNA syn 94.7 0.0045 1.9E-07 39.2 0.0 46 96-141 355-400 (420) 20 2ts1_A Tyrosyl-tRNA synthetase 94.2 0.0066 2.8E-07 38.2 0.0 47 95-141 353-399 (419) 21 2g1l_A Kinesin-like protein KI 80.7 1.3 5.6E-05 23.2 3.6 29 116-145 68-96 (104) 22 1wv3_A Similar to DNA segregat 79.8 1.5 6.4E-05 22.8 3.7 28 117-144 133-160 (238) 23 2jqj_A DNA damage response pro 76.7 1.9 8E-05 22.2 3.4 28 118-145 86-113 (151) 24 1v8c_A MOAD related protein; r 72.2 1.4 5.8E-05 23.1 1.8 59 81-145 21-82 (168) 25 3fm8_A Kinesin-like protein KI 71.7 3.6 0.00015 20.4 3.8 28 117-145 88-115 (124) 26 2k9x_A Tburm1, uncharacterized 69.8 1.1 4.8E-05 23.6 0.9 28 118-145 67-97 (110) 27 3hx1_A SLR1951 protein; P74513 69.2 3.5 0.00015 20.5 3.3 27 117-145 80-106 (131) 28 2hc8_A PACS, cation-transporti 65.9 2.8 0.00012 21.1 2.3 31 118-148 13-43 (113) 29 3hvz_A Uncharacterized protein 65.5 3.4 0.00014 20.5 2.6 24 121-145 44-67 (78) 30 2ff4_A Probable regulatory pro 65.0 4.1 0.00017 20.0 3.0 15 166-180 338-352 (388) 31 2eh0_A KLP, kinesin-like prote 62.1 4.7 0.0002 19.6 2.8 28 117-145 78-105 (130) 32 2kmm_A Guanosine-3',5'-BIS(dip 61.6 4.1 0.00017 20.0 2.4 23 121-144 39-61 (73) 33 2qjl_A URM1, ubiquitin-related 61.2 4.4 0.00019 19.8 2.6 57 81-145 30-94 (99) 34 3ixz_A Potassium-transporting 60.4 3.3 0.00014 20.7 1.8 54 118-178 178-231 (1034) 35 3kt9_A Aprataxin; FHA domain, 59.9 5 0.00021 19.5 2.6 29 118-146 63-92 (102) 36 1wln_A Afadin; beta sandwich, 59.2 4.8 0.0002 19.6 2.5 26 118-144 79-104 (120) 37 1r21_A Antigen KI-67; beta san 58.2 4.8 0.0002 19.6 2.3 26 119-145 75-100 (128) 38 2zxe_A Na, K-ATPase alpha subu 57.1 5 0.00021 19.5 2.2 52 120-178 175-226 (1028) 39 3gqs_A Adenylate cyclase-like 56.9 5 0.00021 19.5 2.2 25 120-145 70-94 (106) 40 2kl0_A Putative thiamin biosyn 56.3 5.1 0.00021 19.4 2.2 23 121-143 33-58 (73) 41 2pie_A E3 ubiquitin-protein li 53.2 11 0.00047 17.2 3.5 28 117-144 73-101 (138) 42 1wgk_A Riken cDNA 2900073H19 p 52.7 3.4 0.00014 20.5 0.8 59 81-145 41-103 (114) 43 2brf_A Bifunctional polynucleo 52.3 6 0.00025 19.0 2.0 29 117-145 68-97 (110) 44 3dwg_C 9.5 kDa culture filtrat 51.1 8.7 0.00037 17.9 2.7 63 80-145 23-88 (93) 45 1mhs_A Proton pump, plasma mem 51.0 4.7 0.0002 19.6 1.3 53 120-178 181-233 (920) 46 1gxc_A CHK2, CDS1, serine/thre 48.4 13 0.00056 16.7 3.3 29 117-145 101-130 (149) 47 1rws_A Hypothetical protein PF 47.9 6 0.00025 19.0 1.4 25 120-145 48-72 (77) 48 1f0z_A THis protein; ubiquitin 47.9 7.8 0.00033 18.2 2.0 25 120-144 33-60 (66) 49 2g1e_A Hypothetical protein TA 47.9 12 0.0005 17.0 3.0 60 81-145 23-85 (90) 50 1yj5_C 5' polynucleotide kinas 46.3 12 0.00049 17.1 2.7 29 117-145 68-97 (143) 51 2kfu_A RV1827 PThr 22; FHA dom 45.7 9.7 0.00041 17.6 2.3 25 119-145 117-141 (162) 52 1bd0_A Alanine racemase; isome 45.7 15 0.00063 16.4 3.3 27 117-144 293-332 (388) 53 2k5p_A THis protein, thiamine- 45.7 10 0.00044 17.4 2.4 24 121-144 37-63 (78) 54 1mzk_A Kinase associated prote 44.9 12 0.00049 17.1 2.5 29 117-145 74-111 (139) 55 2kb3_A Oxoglutarate dehydrogen 44.5 12 0.00052 16.9 2.6 24 120-145 109-132 (143) 56 2q5w_D Molybdopterin convertin 44.2 16 0.00066 16.2 3.3 49 81-145 24-72 (77) 57 3els_A PRE-mRNA leakage protei 44.2 15 0.00062 16.4 3.0 32 117-148 115-147 (158) 58 1g3g_A Protien kinase SPK1; FH 43.9 16 0.00067 16.2 3.4 28 117-144 105-133 (164) 59 1g6g_A Protein kinase RAD53; b 42.6 15 0.00064 16.3 2.8 28 117-144 77-105 (127) 60 1tyg_B YJBS; alpha beta barrel 42.4 15 0.00064 16.3 2.8 11 121-131 23-33 (87) 61 2csw_A Ubiquitin ligase protei 42.1 11 0.00047 17.2 2.1 26 119-144 83-109 (145) 62 1vjk_A Molybdopterin convertin 41.7 9.7 0.00041 17.6 1.7 59 81-145 35-93 (98) 63 1uht_A Expressed protein; FHA 36.9 14 0.00058 16.6 1.9 28 118-145 75-103 (118) 64 1qu5_A Protein kinase SPK1; FH 36.0 16 0.00066 16.2 2.1 29 117-145 105-134 (182) 65 2cu3_A Unknown function protei 35.4 21 0.0009 15.4 3.0 24 120-143 31-57 (64) 66 1ujx_A Polynucleotide kinase 3 35.3 5.9 0.00025 19.0 -0.2 30 117-146 75-105 (119) 67 1l7l_A PA-I galactophilic lect 35.0 6.3 0.00027 18.8 -0.1 28 119-146 4-31 (121) 68 3kmh_A D-lyxose isomerase; cup 34.8 22 0.00092 15.3 3.8 29 120-148 158-189 (246) 69 1lgp_A Cell cycle checkpoint p 33.2 9.9 0.00042 17.5 0.7 29 117-145 66-95 (116) 70 1dmz_A Protein (protein kinase 31.7 23 0.00096 15.2 2.3 29 117-145 81-110 (158) 71 3b8c_A ATPase 2, plasma membra 31.3 3.9 0.00016 20.2 -1.7 52 118-178 131-184 (885) 72 2jpe_A Nuclear inhibitor of pr 26.1 22 0.00092 15.3 1.4 29 117-145 98-127 (140) 73 2kij_A Copper-transporting ATP 23.7 29 0.0012 14.5 1.7 23 126-148 33-55 (124) 74 1wpg_A Sarcoplasmic/endoplasmi 23.1 22 0.00092 15.3 0.9 55 119-178 127-183 (994) 75 3elv_A PRE-mRNA leakage protei 20.5 39 0.0017 13.7 3.2 29 119-147 164-193 (205) 76 2z0t_A Putative uncharacterize 20.2 40 0.0017 13.6 1.9 32 114-145 13-44 (109) No 1 >2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Probab=100.00 E-value=0 Score=527.58 Aligned_cols=202 Identities=40% Similarity=0.713 Sum_probs=191.7 Q ss_pred CCCCCCCEEEEEEECCCCCCCC------CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 9764487123520058888888------8770001368998776544334135899999988485551565479999999 Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 (206) Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~------~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~ 74 (206) ||||+|||+|+|||||++||++ +|+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++|| T Consensus 1 MaRy~GPk~Ki~RRlG~~l~~~~~~~~~~K~~l~kr~~~PGqhG~~r~~k~S~Yg~qL~EKQKlr~~YG-l~EkQf~~~~ 79 (209) T 2vqe_D 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF 79 (209) T ss_dssp -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHH T ss_conf 986547687885207998667786667876500037899986666678763489999999999987518-8789999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHH Q ss_conf 87530334430268999998888899862121247887887624978788889413534833884788611002269999 Q gi|254780187|r 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 (206) Q Consensus 75 ~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~ 154 (206) ++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+. T Consensus 80 ~~A~k~~G~tg~~ll~lLE~RlD~vv~r~g~a~s~~~ARQ~v~Hghv~vng~~v~ips~~~k~gd~i~~~~k~~~~~~v~ 159 (209) T 2vqe_D 80 EEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIR 159 (209) T ss_dssp HHHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEECCCCEECCCCCEEEECCCCCCHHHHH T ss_conf 99985689789999999999889999834751799999999873073219979735886827999998610211549999 Q ss_pred HHHHH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 87752-16899962788124318999967884211246753466316775049 Q gi|254780187|r 155 EASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 155 ~~~~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) ++++. ....+|+||++|.++|+|++++.|++ +| +|+.+||+|||||||| T Consensus 160 ~~~~~~~~~~vp~wL~~d~~~l~g~v~~~P~r-~~--i~~~ine~lVVEyYSR 209 (209) T 2vqe_D 160 QNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDR-ED--LALPVNEQLVIEFYSR 209 (209) T ss_dssp HHHHHTTTCCCCTTCCEETTTTEEECCSCCCG-GG--CCCSCCHHHHHHHTTC T ss_pred HHHHHHCCCCCCCCEEECCHHCEEEEEECCCH-HH--CCCCCCCCEEEEECCC T ss_conf 99986152788886164251089999945478-87--8988773579986069 No 2 >3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ... Probab=100.00 E-value=0 Score=518.56 Aligned_cols=200 Identities=39% Similarity=0.668 Sum_probs=186.6 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCC----CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 764487123520058888888877----0001368998776544334135899999988485551565479999999875 Q gi|254780187|r 2 SKRESSKHKIDRRIGENLWGRPKS----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 (206) Q Consensus 2 ~r~~gpk~K~~RrlG~~l~~~~k~----~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A 77 (206) |||+||++|+|||+|++||++++. ...+++++|||||.+ ++|+|+||+||+||||+||+|| ++||||++||++| T Consensus 1 ARy~GPk~Ki~RRlG~~l~~~~~~~~~~~k~~~~~~PG~hg~~-r~K~S~Yg~qL~EKQKlr~~Yg-i~EkQf~~~~~~A 78 (205) T 3ofo_D 1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEA 78 (205) T ss_dssp CCCCSCHHHHHHHTTSCCCSSCSSSCSSCSSCCSSCSSSSTTS-CCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH T ss_conf 9656745553011798866678886556433466899978888-8862589999999999988828-8779999999999 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHH Q ss_conf 30334430268999998888899862121247887887624978788889413534833884788611002269999877 Q gi|254780187|r 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 (206) Q Consensus 78 ~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~ 157 (206) .+++|+||++||++||+||||||||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+.++. T Consensus 79 ~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ips~~~k~gd~i~v~eks~~~~~~~~~~ 158 (205) T 3ofo_D 79 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAAL 158 (205) T ss_dssp HHSSSCHHHHHHHHHHHBHHHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCBCCTTCEEEECSSSCSCHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH T ss_conf 74799689999999998777898606620479999988860886509978637872536998975313351478999998 Q ss_pred HH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 52-16899962788124318999967884211246753466316775049 Q gi|254780187|r 158 QL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 158 ~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) +. ....+|+||++|.++|+|++++.|+++ | +|+.+||+|||||||| T Consensus 159 ~~~~~~~~P~wL~~d~~~l~g~v~~~P~r~-~--i~~~i~e~lVvEyYSr 205 (205) T 3ofo_D 159 ELAEQREKPTWLEVDAGKMEGTFKRKPERS-D--LSADINEHLIVELYSK 205 (205) T ss_dssp HHHHTSCCCSSEECCSSSCEEEECSCCCST-T--SCSSCCSTTHHHHTTC T ss_pred HHHCCCCCCCEEEEECCCCEEEEEECCCHH-H--CCCCCCCCEEEEECCC T ss_conf 620548899879976523899999521789-8--8988771479985459 No 3 >3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=100.00 E-value=0 Score=500.08 Aligned_cols=198 Identities=36% Similarity=0.543 Sum_probs=185.7 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 97644871235200588888888770001368998776544334135899999988485551565479999999875303 Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 (206) Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~ 80 (206) ||||+||++|+|||||+++|.+.+. .+.+|++|++.+++|.|+||+||+||||+||+|| ++|+||++||++|.++ T Consensus 1 MaRy~GPk~Ki~RRlG~~~~~~~k~----~~~~~~~~~~~r~~k~S~Yg~qL~eKQKlr~~YG-i~EkQf~~~~~~a~~~ 75 (201) T 3bbn_D 1 MSRYRGPRFKKIRRLGALPGLTNKR----PRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKA 75 (201) T ss_dssp CCSCCSCCTTSSSSSSSCCCSSSCC----CSCCSSSCSSSCCCCCCTTHHHHTTHHHHHHHHT-CCHHHHHHHHHHHHHS T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC T ss_conf 9977676856620589884666777----7899987888788654489999999999999839-9789999999999855 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC Q ss_conf 34430268999998888899862121247887887624978788889413534833884788611002269999877521 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA 160 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~ 160 (206) +|+||++|+++||+||||||||+|||+|+++|||||+||||+|||++||||||.|++||+|+++|++++...+.++.+.. T Consensus 76 ~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlV~Hghi~VNgk~v~ipSy~vk~GD~I~v~eks~~~~~i~~~~~~~ 155 (201) T 3bbn_D 76 KGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLS 155 (201) T ss_dssp SSCTTTTTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSST T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCEEECCEEECCCCEECCCCCEEEECHHHCCHHHHHHHHHHC T ss_conf 99779999999998767887505521577761304732784877989779987827999899732221469999999850 Q ss_pred -CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf -6899962788124318999967884211246753466316775049 Q gi|254780187|r 161 -ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 161 -~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) ...+|+||++|.++++|++++.|++ +| +|+.+||+|||||||| T Consensus 156 ~~~~~p~wl~~d~~~~~g~v~~~P~r-~~--i~~~i~e~lVVEyYSr 199 (201) T 3bbn_D 156 PREELPKHLTLNPFPYKGLVNQIIDS-KW--VGLKINELLVVEYYSR 199 (201) T ss_dssp TTSCCCTTEEEETTTTEEEECSCCCG-GG--CCCSCCHHHHTTTSCC T ss_pred CCCCCCCEEEEECCCCEEEEECCCCH-HH--CCCCCCCCEEEEECCC T ss_conf 54899986998744589999617865-44--8999874479997577 No 4 >1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Probab=100.00 E-value=0 Score=416.60 Aligned_cols=158 Identities=44% Similarity=0.757 Sum_probs=151.2 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEE Q ss_conf 41358999999884855515654799999998753033443026899999888889986212124788788762497878 Q gi|254780187|r 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 (206) Q Consensus 44 k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~v 123 (206) |+|+||+||+||||+||+|| ++|+||++||++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+| T Consensus 2 K~S~Yg~qL~eKQK~k~~Yg-i~ekQ~~~~~~~a~~~~g~tg~~ll~lLE~RLDnvvyR~gfa~t~~~ARQlv~Hghi~V 80 (159) T 1c05_A 2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILV 80 (159) T ss_dssp CCCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEE T ss_pred CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE T ss_conf 75759999999999999729-64899999999997058970899999999865677204775279999999998037070 Q ss_pred CCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE Q ss_conf 88894135348338847886110022699998775216899962788124318999967884211246753466316775 Q gi|254780187|r 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 (206) Q Consensus 124 ng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEy 203 (206) ||++||||||+|+|||+|++++++++...+..+.+ ....+|+||++|.++++|++++.|++ +| +|+.+||+||||| T Consensus 81 Ngk~v~ipS~~vk~gD~I~~~~ksk~~~~i~~~~~-~~~~~P~~L~vd~~~l~g~v~~~P~r-~~--i~~~ine~lVVEy 156 (159) T 1c05_A 81 DGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPER-SE--LPAEINEALIVEF 156 (159) T ss_dssp TTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCT-TT--SCSSCCSHHHHHH T ss_pred CCEEEEECCEECCCCCEEEECCCCCCHHHHHHHHH-CCCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEE T ss_conf 24798525677489989873210221899999996-55778985899765589999955277-87--8988771579986 Q ss_pred ECC Q ss_conf 049 Q gi|254780187|r 204 YSR 206 (206) Q Consensus 204 YSR 206 (206) ||| T Consensus 157 YSR 159 (159) T 1c05_A 157 YSR 159 (159) T ss_dssp HHC T ss_pred CCC T ss_conf 369 No 5 >3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Probab=99.94 E-value=1.7e-28 Score=204.18 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=102.0 Q ss_pred EEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCC Q ss_conf 12352005888888887700013689987765443341--3589999998848555156547999999987530--3344 Q gi|254780187|r 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP--SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR--SRGD 83 (206) Q Consensus 8 k~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~--S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~--~~g~ 83 (206) ..++++++|. + +++.+.++++..++-++. +-++.+..++++++..|+ +.|++|+.++..+.+ ..+. T Consensus 22 e~kl~~~yGL----~-----~k~e~~~~~~~~~~~r~~ar~l~~~~~~~~~r~~~~~~-ll~kl~~~g~~~~~~~~l~~v 91 (158) T 3jyv_D 22 ELKLAGEFGL----K-----NKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNA-LIRRLVRVGVLSEDKKKLDYV 91 (158) T ss_dssp --------------------------------------CHHHHHHHTTHHHHHHCCCC-CSHHHHHHTTSSSHHHHCCSC T ss_pred HHHHHHHCCC----C-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCH T ss_conf 8888652286----7-----46547422231678999999997357222089999999-999999875200112331100 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCC--EEEECCHH Q ss_conf 30268999998888899862121247887887624978788889413534833884--78861100 Q gi|254780187|r 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD--VIEVKQKS 147 (206) Q Consensus 84 t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd--~I~~~~ks 147 (206) ++.+++.+||+|||+||||+|||+|+.+|||||+||||+|||++||+|||+|+.|| .|++.++| T Consensus 92 ~~~~~~~lLeRRLd~vv~r~g~a~s~~~ARqlI~HGHI~Vng~~V~iPSy~V~~~~Ed~I~~~~~S 157 (158) T 3jyv_D 92 LALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 157 (158) T ss_dssp HHHHHHHHHHHBHHHHHHHHTSSSSTTTTTHHHHTSCEEESSCCCSCTTCBCCSSSCEEECSTTSC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCEEEECCEEECCCCEEEECCCCCEEEECCCC T ss_conf 000689998776888999957779989998766788899999996379738425985669852899 No 6 >1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=99.85 E-value=1.3e-22 Score=166.01 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=96.8 Q ss_pred EEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH--HHHCCCCC Q ss_conf 123520058888888877000136899877654433413589999998848555156-547999999987--53033443 Q gi|254780187|r 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKE--ADRSRGDT 84 (206) Q Consensus 8 k~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~-~~ekq~~~~~~~--A~~~~g~t 84 (206) ..|+++++|.. .|..+.+-...- ++-++.+.+...|.+++..+..+|. +.++.++..+-. +....+.+ T Consensus 9 E~kl~~~YGLk----nKrE~~k~~~~l-----~kiRk~ar~L~~l~~~~~~r~~~~~~Ll~kL~~~Gil~~~~~~l~~vl 79 (179) T 1s1h_D 9 ELKLAGEFGLK----NKKEIYRISFQL-----SKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVL 79 (179) T ss_dssp HHHHTSCCCSS----SCCCCCCSSCSS-----SCCCCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSSSBHHHHH T ss_pred HHHHHHHHCCC----CCHHHHHHHHHH-----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 99999997888----538999999999-----999999999866874420799999999999998466354321044554 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHH Q ss_conf 026899999888889986212124788788762497878888941353483388--478861100 Q gi|254780187|r 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKS 147 (206) Q Consensus 85 ~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ks 147 (206) +.++..+||+|||++|||+|||+|+.+|||||+||||+|||++||+|||+|++| |.|++.++| T Consensus 80 ~l~v~~~lerRL~~~v~r~~~a~s~~~Arq~I~hghi~v~~~~v~~Ps~~v~~~~E~~i~~~~~S 144 (179) T 1s1h_D 80 ALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 144 (179) T ss_dssp HCSSSSSGGGBHHHHHHHHTSSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTTEECCBCSSCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEECCCCEEEECCCCCEEEEECCC T ss_conf 20389999888999999936668899999997547635899895248658415884537642699 No 7 >2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.69 E-value=3.4e-18 Score=137.28 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=56.0 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHHHHH Q ss_conf 99888889986212124788788762497878888941353483388--478861100226 Q gi|254780187|r 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKSKQL 150 (206) Q Consensus 92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ksk~~ 150 (206) -++|||++|||+|||.|+.+|||||.||||+|||++|++|||+|+.+ |.|++.++|+.. T Consensus 6 ~~RRLd~il~r~~fa~S~~~ARqlI~HghI~Vng~~V~~Ps~lV~~~~Ed~It~~~~Ski~ 66 (71) T 2cqj_A 6 SGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS 66 (71) T ss_dssp CEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC T ss_pred HHCCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEEECCCCCCEEEEECCCCCC T ss_conf 2301378998826537899999997669599999996579769538988769996788677 No 8 >1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6 Probab=98.84 E-value=2.6e-10 Score=86.19 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 89999988888998621212478878876249787888894135348338847886110 Q gi|254780187|r 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 88 ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) +..-.+.|||.+|.++|||+|+.+|+++|.+|+|.|||+.++.|++.+.+||+|++..+ T Consensus 15 l~~~~~irL~k~L~~~g~~~Sr~eAk~lI~~G~V~VNG~~v~~p~~~v~~gD~V~vdg~ 73 (79) T 1p9k_A 15 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79) T ss_dssp CCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE T ss_pred CCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCE T ss_conf 49997197999998778836899999999849979899992778879899999999999 No 9 >1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A Probab=98.74 E-value=8.3e-09 Score=76.40 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=50.5 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH Q ss_conf 9888889986212124788788762497878888941353483388478861100 Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206) .+|||..|..++|+.|+..|.++|..|+|.|||+.+ .||+.|++||+|+|.-.. T Consensus 8 ~mRlD~~L~~~r~~KtRs~A~~~i~~G~V~vNg~~~-K~s~~v~~gD~i~i~~~~ 61 (133) T 1dm9_A 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 (133) T ss_dssp CCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETT T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEC-CCCCCCCCCCEEEEEECC T ss_conf 686389998716250499999999869479899646-766668899989998689 No 10 >2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} Probab=98.48 E-value=1.5e-08 Score=74.73 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=48.3 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 8888899862121247887887624978788889413534833884788611 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ||||..|.+.++..||..|+++|..|+|.|||+.+ .||+.|++||+|++.- T Consensus 1 mRlDk~L~~~~~~~SRs~~~~lI~~G~V~vng~~~-k~s~~V~~Gd~i~i~~ 51 (92) T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHY 51 (92) T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECC T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEE-EECCEECCCCEEEEEE T ss_conf 97789998737737999999999889289799997-5236827999999983 No 11 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Probab=98.38 E-value=4.8e-07 Score=64.98 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=50.1 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCE--EECCEEEECCCEEECCCCEEEECC Q ss_conf 8888899862121247887887624978--788889413534833884788611 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i--~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .|||..|+..|++.||.+|+.+|..|.| .|||++++.||+.|.++|.|++.. T Consensus 7 ~RLD~~Lv~~gl~~SR~~A~~lI~~G~V~~~Vng~~v~Kps~~v~~~~~i~v~~ 60 (291) T 3hp7_A 7 ERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291) T ss_dssp EEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCEEEEEC T ss_conf 679999997848114999999998599524209989468867879999899947 No 12 >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Probab=98.22 E-value=1.1e-06 Score=62.71 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=48.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 88888998621212478878876249787888894135348338847886110 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) +|||-.+-..+. .|+.+|..+|..|.|.|||+.|+.|++.|.+||.|.+..+ T Consensus 4 iRLdk~Ls~~~~-~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~ 55 (234) T 1ksk_A 4 MRLDKFIAQQLG-VSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN 55 (234) T ss_dssp EEHHHHHHHHHT-CCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE T ss_pred CHHHHHHHHCCC-CCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC T ss_conf 229999987789-6899999999889599999995678858177666885031 No 13 >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} Probab=98.10 E-value=3e-06 Score=59.83 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=46.9 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 88888998621212478878876249787888894135348338847886110 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) .|||-+|-++|+| |+.+|.+||..|.|.|||++|+ +++.|.+||.|++..+ T Consensus 7 iRL~K~La~~g~~-SRr~ae~lI~~GrV~VNGkvv~-~~~kV~~~D~I~vdg~ 57 (290) T 3dh3_A 7 VRLNKYISESGIC-SRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQ 57 (290) T ss_dssp EEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTE T ss_pred CCHHHHHHHCCCC-HHHHHHHHHHCCEEEECCEECC-CCCCCCCCCEEEECCE T ss_conf 2599999877884-2999999997796998999957-9889799998999999 No 14 >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Probab=97.98 E-value=6e-06 Score=57.89 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=48.6 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 988888998621212478878876249787888894135348338847886110 Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) -+|||..+-..+ ..|+.+|+++|..|.|.|||++|+.|++.|.+||.|.+.++ T Consensus 2 ~mRLdkfLs~~~-~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~ 54 (243) T 1vio_A 2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE 54 (243) T ss_dssp CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE T ss_pred CHHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC T ss_conf 568999999877-85899999999789099999990549968488787995486 No 15 >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Probab=97.25 E-value=3.5e-05 Score=52.86 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 98888899862121247887887624978788889413534833884788611 Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -+|||.++-+.-=--|+..++++|..|.|.|||++++.|++.|++||.|.+.. T Consensus 16 G~RLD~~L~~~~~~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~ 68 (325) T 1v9f_A 16 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68 (325) T ss_dssp ----------------------------------------------------- T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECC T ss_conf 86799999986687799999999986998999999378541656999999826 No 16 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Probab=96.61 E-value=0.0035 Score=39.91 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=45.0 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 88899862121247887887624978788889413534833884788611002 Q gi|254780187|r 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 96 LD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) |-.++..+|+++|..+||++|..|-|.|||.+|+-|.+.+..++.+-++-..| T Consensus 371 l~dll~~~gl~~SksEaRRlI~~ggv~IN~~ki~d~~~~i~~~~~~ilr~GKk 423 (432) T 1h3f_A 371 VARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKD 423 (432) T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETTT T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEEECCC T ss_conf 99999985997778999999983998989999438770425898389985585 No 17 >3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Probab=96.53 E-value=0.0026 Score=40.78 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=41.5 Q ss_pred HHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEEC Q ss_conf 6212124788788762497878888941353483388478861 Q gi|254780187|r 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 102 r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) ++++|.|..+|+.++..|.|.|||+..+-+.|.+-.-|+||+. T Consensus 17 ~Lk~A~t~rEak~Il~~~~V~VDGkvr~d~k~PvGlmDVisi~ 59 (213) T 3kbg_A 17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN 59 (213) T ss_dssp HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEET T ss_pred HHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEC T ss_conf 5341265799999986893898999964489987437899978 No 18 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Probab=96.42 E-value=0.015 Score=35.80 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=38.6 Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCE Q ss_conf 8998621212478878876249787888894135348338847 Q gi|254780187|r 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 (206) Q Consensus 98 ~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~ 140 (206) .++..+|+++|..+||.||..|-|.|||.+|+-|.+.+...|. T Consensus 360 dLLv~~gL~~SksEARRLI~qGgV~IN~~kI~d~~~~l~~~d~ 402 (432) T 2jan_A 360 DLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDF 402 (432) T ss_dssp HHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGS T ss_pred HHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCCHHHH T ss_conf 9999828977899999999919899899981694331378781 No 19 >1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Probab=94.68 E-value=0.0045 Score=39.20 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=41.5 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEE Q ss_conf 8889986212124788788762497878888941353483388478 Q gi|254780187|r 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 (206) Q Consensus 96 LD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I 141 (206) +=.++..+|+++|..+||.+|..|-|.|||.+|+-|.+.+.+.|.+ T Consensus 355 l~dlL~~~gL~~SksEARRLI~qGgV~IN~~ki~D~~~~l~~~~~~ 400 (420) T 1jil_A 355 IVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420) T ss_dssp ---------------------------------------------- T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHCC T ss_conf 9999998498677999999998499899999804854512776704 No 20 >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Probab=94.24 E-value=0.0066 Score=38.16 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=41.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEE Q ss_conf 88889986212124788788762497878888941353483388478 Q gi|254780187|r 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 (206) Q Consensus 95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I 141 (206) -|-.++..+|+++|..+||.+|..|-|.|||++|+-|.+.+...|.+ T Consensus 353 ~l~dlL~~~gl~~SksEARRLI~qGgV~INg~kI~D~~~~i~~~~~l 399 (419) T 2ts1_A 353 PLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419) T ss_dssp ----------------------------------------------- T ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCHHHCC T ss_conf 69999998599778999999998699898999923832212775604 No 21 >2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, SGC, transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2 Probab=80.68 E-value=1.3 Score=23.18 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.5 Q ss_pred HHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 624978788889413534833884788611 Q gi|254780187|r 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 116 v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -+-+.+.|||++|+-| ..++.||.|.+=. T Consensus 68 ~s~~gt~VNg~~i~~~-~~L~~GD~I~~G~ 96 (104) T 2g1l_A 68 CEGAETYVNGKLVTEP-LVLKSGNRIVMGK 96 (104) T ss_dssp CTTCCEEETTEECCSC-EECCTTCEEEETT T ss_pred CCCCCEEECCEECCCC-EECCCCCEEEECC T ss_conf 9888719999490521-8989999999899 No 22 >1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Probab=79.79 E-value=1.5 Score=22.79 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=25.1 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEEC Q ss_conf 2497878888941353483388478861 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) ..|.|.+||++++-....++.||++.+. T Consensus 133 ~~g~vY~Ng~kv~~~~~~l~~GD~l~i~ 160 (238) T 1wv3_A 133 KNTDVYINYELQEQLTNKAYIGDHIYVE 160 (238) T ss_dssp TTCCEEETTEECCSSEEEEETTCEEEET T ss_pred CCCCEEECCEEEECCCCCCCCCCEEEEC T ss_conf 8997889999940461102589999999 No 23 >2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Probab=76.68 E-value=1.9 Score=22.20 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=22.8 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 4978788889413534833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -.-+.|||++|..-.+.|+.||+|.+-+ T Consensus 86 ~nGt~VNg~~i~~~~~~L~~GD~I~iG~ 113 (151) T 2jqj_A 86 RNGTFINGNRLVKKDYILKNGDRIVFGK 113 (151) T ss_dssp SSCEEETTEECCSSCEEECSSEEEEETT T ss_pred CCCCEECCEECCCCCEECCCCCEEEECC T ss_conf 7803799999258865999998999899 No 24 >1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 Probab=72.16 E-value=1.4 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=39.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC Q ss_conf 3443026899999888889986212124788788762497878888941---3534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~ 145 (206) .|.|...++..|..+.- +++..+....++-.|=.|.|||+.+. -.+..+++||.|.+-+ T Consensus 21 eg~TV~eLl~~L~~~yP------~l~~~Lld~~~lr~~v~V~VNge~I~~~~g~dt~L~dgDEVailP 82 (168) T 1v8c_A 21 PGATVGEVLENLVRAYP------ALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168) T ss_dssp CCSBHHHHHHHHHHHCG------GGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHCC------CHHHHHCCCCCCHHHEEEEECCEEECCCCCCCCCCCCCCEEEEEC T ss_conf 78889999999987766------224442122130020599984766314568885569999999979 No 25 >3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consortium, SGC, ATP-binding, coiled coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3mdb_A* Probab=71.72 E-value=3.6 Score=20.41 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=22.6 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 24978788889413534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) +.+.+.|||..|+-| ..|+.||+|.+=+ T Consensus 88 s~~~t~vNG~~i~~~-~~L~~GD~I~iG~ 115 (124) T 3fm8_A 88 KNTRTFVNGSSVSSP-IQLHHGDRILWGN 115 (124) T ss_dssp TTCCEEETTEECCSC-EEECTTCEEEETT T ss_pred CCCCEEECCCEECCC-EECCCCCEEEECC T ss_conf 998678788695544-7999999999899 No 26 >2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei} Probab=69.75 E-value=1.1 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=23.4 Q ss_pred CCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 4978788889413---534833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) +=.|+|||+.++. .++.|++||.|++=+ T Consensus 67 ~i~VlVNg~~i~~l~gldt~L~dgDeV~~~p 97 (110) T 2k9x_A 67 GILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110) T ss_dssp TEEEEESSSBHHHHTSSCCCCCSSCEEEEEE T ss_pred CEEEEECCEECCCCCCCCCCCCCCCEEEEEC T ss_conf 6799999928436888663839969999968 No 27 >3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, SGR167A, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Probab=69.19 E-value=3.5 Score=20.50 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.9 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 24978788889413534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) +-.-+.|||++|. ...|+.||+|.+-+ T Consensus 80 S~NGt~vNg~~i~--~~~L~~GD~I~iG~ 106 (131) T 3hx1_A 80 SVNGLMINGKKVQ--EHIIQTGDEIVMGP 106 (131) T ss_dssp CSSCEEETTEEES--EEECCTTCEEECST T ss_pred CCCCEEECCEECC--CEECCCCCEEEECC T ss_conf 6353059999986--17899999999899 No 28 >2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Probab=65.93 E-value=2.8 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.0 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 4978788889413534833884788611002 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) .-++.-||+..++|+-.|.+||+|.+++... T Consensus 13 ~a~V~rdg~~~~i~~~~l~~GDiv~v~~Gd~ 43 (113) T 2hc8_A 13 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEK 43 (113) T ss_dssp EEEEEETTEEEEEEGGGCCTTCEEEECTTCB T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEECCCCE T ss_conf 8999999999999999976699999889999 No 29 >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium leptum dsm 753} Probab=65.47 E-value=3.4 Score=20.52 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=19.8 Q ss_pred EEECCEEEECCCEEECCCCEEEECC Q ss_conf 8788889413534833884788611 Q gi|254780187|r 121 VLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 121 i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ..|||+.+. +++.|+.||+|+|-. T Consensus 44 akING~~v~-l~~~L~~GD~VeIiT 67 (78) T 3hvz_A 44 AKVDGRIVP-IDYKVKTGEIIDVLT 67 (78) T ss_dssp EEETTEEEC-TTCBCCTTCBEEEEE T ss_pred EEECCEECC-CCCCCCCCCEEEEEE T ss_conf 699999999-988769999999997 No 30 >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Probab=65.02 E-value=4.1 Score=20.02 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=8.0 Q ss_pred CEEEECCCCCEEEEE Q ss_conf 627881243189999 Q gi|254780187|r 166 EYISVNHDNMVATFV 180 (206) Q Consensus 166 ~wLevd~~~l~g~v~ 180 (206) .|.=.|.....|+++ T Consensus 338 ~~~~~dl~S~ngt~v 352 (388) T 2ff4_A 338 NYVINDLRSSNGVHV 352 (388) T ss_dssp CEEEEECSCSSCCEE T ss_pred EEEEEECCCCCCCEE T ss_conf 799997989998249 No 31 >2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=62.06 E-value=4.7 Score=19.62 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.0 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 24978788889413534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) +-+.+.|||++|. ....|+.||.|.+-. T Consensus 78 s~~~t~VNG~~I~-~~~~L~~GD~I~~G~ 105 (130) T 2eh0_A 78 ERSETYVNGKRVS-QPVQLRSGNRIIMGK 105 (130) T ss_dssp SSSCEEETTEECC-SCEECCTTCBCEESS T ss_pred CCCCEEECCEECC-CCEECCCCCEEEECC T ss_conf 9898489998967-637999999999899 No 32 >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Probab=61.63 E-value=4.1 Score=20.03 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=19.1 Q ss_pred EEECCEEEECCCEEECCCCEEEEC Q ss_conf 878888941353483388478861 Q gi|254780187|r 121 VLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 121 i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) ..|||+.+. .++.|+.||+|+|- T Consensus 39 A~ING~~~~-L~~~L~~GD~VeIi 61 (73) T 2kmm_A 39 AKVNHKLVP-LSYVLNSGDQVEVL 61 (73) T ss_dssp EEETTEECC-TTCBCCSSSBEEEE T ss_pred EEECCEECC-CCCCCCCCCEEEEE T ss_conf 788999999-88885899999999 No 33 >2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A Probab=61.18 E-value=4.4 Score=19.81 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=34.5 Q ss_pred CCCCCHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 3443026899999888-----8899862121247887887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRL-----DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RL-----D~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .|.|...|+..|..+. +..++- ..-++-.+=.|+|||.-+.. ..+.|+.||.|++-+ T Consensus 30 ~~~Tv~~Ll~~L~~~~~~~~~~~~~~~--------~~~~lr~~i~v~vN~~di~~l~gl~t~l~~gD~V~i~p 94 (99) T 2qjl_A 30 DPVTVGDLIDHIVSTMINNPNDVSIFI--------EDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99) T ss_dssp SCCBHHHHHHHHHHHTCSSGGGHHHHE--------ETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHH--------CCCCCCCCEEEEECCCEEEECCCCCCCCCCCCEEEEEC T ss_conf 997899999999987553225554330--------13564452799989926350578674869979999968 No 34 >3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A Probab=60.44 E-value=3.3 Score=20.65 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=34.9 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE Q ss_conf 4978788889413534833884788611002269999877521689996278812431899 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~ 178 (206) +-.|.-||+.+.||+-.|.|||+|.+++...- +.-... .+. .-+.||...|+|. T Consensus 178 ~~~ViRdG~~~~I~~~~Lv~GDIV~l~~Gd~i-PaD~~l---l~~---~~l~VdeS~LTGE 231 (1034) T 3ixz_A 178 QATVIRDGDKFQINADQLVVGDLVEMKGGDRV-PADIRI---LQA---QGRKVDNSSLTGE 231 (1034) T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEECCCCEE-EEEEEE---EEE---CCCEEECCCCCCC T ss_conf 66999999999988899798988999997999-770499---984---6925670415578 No 35 >3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} Probab=59.86 E-value=5 Score=19.46 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=21.3 Q ss_pred CCCEEECCEEEEC-CCEEECCCCEEEECCH Q ss_conf 4978788889413-5348338847886110 Q gi|254780187|r 118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQK 146 (206) Q Consensus 118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~k 146 (206) -.-..|||+.+.. -++.|+.||+|++-.. T Consensus 63 ~NGt~vng~~l~~~~~~~L~~GD~i~l~~~ 92 (102) T 3kt9_A 63 VNPTSIDSVVIGKDQEVKLQPGQVLHMVNE 92 (102) T ss_dssp SSCCEETTEECCBTCEEEECTTCCEEEETT T ss_pred CCCEEECCEEECCCCCCCCCCCCEEEEECC T ss_conf 886689998957896005799999999188 No 36 >1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Probab=59.20 E-value=4.8 Score=19.57 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=21.2 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEEC Q ss_conf 497878888941353483388478861 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) -+.+.|||+.|.-+ ..|+.||.|.+= T Consensus 79 ~~~t~VNG~~v~~~-~~L~~gD~I~~G 104 (120) T 1wln_A 79 DAETYVDGQRISET-TMLQSGMRLQFG 104 (120) T ss_dssp SSCEEETSCBCSSC-EEECTTCEEEET T ss_pred CCCEEECCCEECCE-EECCCCCEEEEC T ss_conf 98528888795732-698999999989 No 37 >1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Probab=58.22 E-value=4.8 Score=19.56 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.0 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 978788889413534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .-+.|||++|+.+ ..|+.||+|.+-+ T Consensus 75 ngt~vNg~~v~~~-~~L~~Gd~i~iG~ 100 (128) T 1r21_A 75 NPTQVNGSVIDEP-VRLKHGDVITIID 100 (128) T ss_dssp SCCEETTEECSSC-EECCTTEEEECSS T ss_pred CCEEECCEECCCC-EECCCCCEEEECC T ss_conf 6489999898873-6999999999989 No 38 >2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 1mo7_A 1mo8_A* 1q3i_A Probab=57.06 E-value=5 Score=19.47 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=33.3 Q ss_pred CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE Q ss_conf 78788889413534833884788611002269999877521689996278812431899 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~ 178 (206) .|.-||+.+.+|+-.+.|||+|.+++...- +. +. ...+. .-+.||.+.|+|. T Consensus 175 ~ViRdG~~~~I~~~~Lv~GDIV~l~~G~~i-Pa--D~-~ll~g---~~~~VdeS~LTGE 226 (1028) T 2zxe_A 175 LVIRDGEKSTINAEFVVAGDLVEVKGGDRI-PA--DL-RIISA---HGCKVDNSSLTGE 226 (1028) T ss_dssp EEEETTEEEEEEGGGCCTTCEEEEETTCBC-CS--EE-EEEEE---EEEEEECHHHHSC T ss_pred EEEECCEEEEEEHHHCCCCCEEEECCCCEE-EE--EE-EEEEE---CCEEEECHHHCCC T ss_conf 999999999988899894998999998999-64--07-99985---6748982021079 No 39 >3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D} Probab=56.87 E-value=5 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=17.1 Q ss_pred CEEECCEEEECCCEEECCCCEEEECC Q ss_conf 78788889413534833884788611 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .+.|||+.|.- ...|++||+|.+-+ T Consensus 70 Gt~vNg~~v~~-~~~L~~gd~i~iG~ 94 (106) T 3gqs_A 70 GVIVEGRKIEH-QSTLSANQVVALGT 94 (106) T ss_dssp CCEETTEECSS-EEECCTTCCEEETT T ss_pred CCEECCEECCC-EEECCCCCEEEECC T ss_conf 85699999477-38999999999989 No 40 >2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} Probab=56.28 E-value=5.1 Score=19.42 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=13.8 Q ss_pred EEECCEEEEC---CCEEECCCCEEEE Q ss_conf 8788889413---5348338847886 Q gi|254780187|r 121 VLVNGRSVNI---GSYRCKEGDVIEV 143 (206) Q Consensus 121 i~vng~~v~~---ps~~~k~gd~I~~ 143 (206) |.|||..|.. +++.|+.||.|++ T Consensus 33 V~vN~~iVpr~~~~~~~L~egD~IEI 58 (73) T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEI 58 (73) T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEE T ss_pred EEECCEECCHHHCCCCCCCCCCEEEE T ss_conf 99899992889938221899899999 No 41 >2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Probab=53.17 E-value=11 Score=17.22 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.3 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEEC Q ss_conf 24978788889413-53483388478861 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK 144 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~ 144 (206) +..-+.|||+++.. -.+.|++||+|.+= T Consensus 73 S~NGt~vNg~~l~~~~~~~L~~gD~I~iG 101 (138) T 2pie_A 73 SLNGVWLNRARLEPLRVYSIHQGDYIQLG 101 (138) T ss_dssp CSSCEEETTEECCTTCCEECCTTCEEEES T ss_pred CCCCEEECCEECCCCCEEECCCCCEEEEC T ss_conf 88876999999579964899999999979 No 42 >1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A Probab=52.74 E-value=3.4 Score=20.53 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=35.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 344302689999988888998621212478-87887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF-AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~-~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .+.|...||..|..+... +.+..+ ..-++-.+=.|+|||..+.. ..+.|+.||.|++-+ T Consensus 41 ~~~TV~eLl~~L~~~~~~------~~~~l~~~~g~lr~~i~VlVNg~di~~l~g~dt~LkdGDeV~~ip 103 (114) T 1wgk_A 41 EPWDIRNLLVWIKKNLLK------ERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114) T ss_dssp SCCBHHHHHHHHTTTTCC------SCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE T ss_pred CCCCHHHHHHHHHHHCCC------HHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCEEEEEC T ss_conf 864599999999997640------267875337876655699988934340578764669979999978 No 43 >2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Probab=52.27 E-value=6 Score=18.95 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=21.9 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 24978788889413-534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) +-+...|||+++.. ..+.|++||+|++-. T Consensus 68 s~Ngt~vNg~~l~~~~~~~L~~GD~i~l~~ 97 (110) T 2brf_A 68 GVNPSTTGTQELKPGLEGSLGVGDTLYLVN 97 (110) T ss_dssp SSSCCEEC-CBCCTTCEEEEETTCEEEEET T ss_pred CCCCEEECCEECCCCCCCCCCCCCEEEECC T ss_conf 878519999990689502879999999978 No 44 >3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3dwm_A Probab=51.09 E-value=8.7 Score=17.89 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=39.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC Q ss_conf 33443026899999888889986212124788788762497878888941---3534833884788611 Q gi|254780187|r 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ 145 (206) Q Consensus 80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~ 145 (206) ..|.|..-++..|+.+--...-.+-+..+- -++-.|=.|.|||+.+. -+...|++||.|.+=+ T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~---g~l~~~v~v~vn~~~i~~~~~~~~~l~~gdeV~i~P 88 (93) T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSP---GKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93) T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSST---TSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE T ss_pred ECCCCHHHHHHHHHHHCCHHHHHHHHCCCC---CCCCCEEEEEECCHHHCCCCCCCCCCCCCCEEEEEC T ss_conf 478889999999986780899997521124---441121799988711003357566489999999968 No 45 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Probab=50.98 E-value=4.7 Score=19.61 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=34.1 Q ss_pred CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE Q ss_conf 78788889413534833884788611002269999877521689996278812431899 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~ 178 (206) .|.-||+.+.+|+-.|.|||+|.+++...- +. +. ..... -..|+||...++|. T Consensus 181 ~ViRdG~~~~I~~~eLv~GDiV~l~~G~~V-Pa--Dg-~li~g--~~~l~VDeS~LTGE 233 (920) T 1mhs_A 181 VVLRDGTLKEIEAPEVVPGDILQVEEGTII-PA--DG-RIVTD--DAFLQVDQSALTGE 233 (920) T ss_dssp EEECSSSEEECCTTTSCTTSEEEECTTCBC-SS--EE-EEEEE--SSCCEEBCTTTSSC T ss_pred EEEECCEEEEEEHHHCCCCCEEEECCCCEE-EE--EE-EEEEC--CCCEEEECCCCCCC T ss_conf 999999999988899891888999999999-31--59-99977--50117787444478 No 46 >1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Probab=48.36 E-value=13 Score=16.72 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=22.5 Q ss_pred HCCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 249787888894135-34833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) +-.-+.|||+++..- ...|+.||.|++-. T Consensus 101 StNGT~vN~~~l~~~~~~~L~~GD~I~lg~ 130 (149) T 1gxc_A 101 SGNGTFVNTELVGKGKRRPLNNNSEIALSL 130 (149) T ss_dssp CSSCEEETTEECCTTCEEECCTTEEEEESS T ss_pred CCCCCEECCEECCCCCEEECCCCCEEEECC T ss_conf 968856999991699878889999999798 No 47 >1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown function; NMR {Pyrococcus furiosus dsm 3638} SCOP: d.15.3.2 PDB: 1sf0_A Probab=47.91 E-value=6 Score=18.97 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.3 Q ss_pred CEEECCEEEECCCEEECCCCEEEECC Q ss_conf 78788889413534833884788611 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -|.|||..+. ++..|++||.|++-+ T Consensus 48 ~VavNg~~v~-~d~~l~dgDeV~i~p 72 (77) T 1rws_A 48 IAKVNGKVVL-EDDEVKDGDFVEVIP 72 (77) T ss_dssp CEEETTEEEC-SSSCCCSSCCCBCSC T ss_pred EEEECCEECC-CCCCCCCCCEEEEEE T ss_conf 9998999968-984879999999990 No 48 >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Probab=47.91 E-value=7.8 Score=18.20 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=18.5 Q ss_pred CEEECCEEEEC---CCEEECCCCEEEEC Q ss_conf 78788889413---53483388478861 Q gi|254780187|r 120 HVLVNGRSVNI---GSYRCKEGDVIEVK 144 (206) Q Consensus 120 ~i~vng~~v~~---ps~~~k~gd~I~~~ 144 (206) -|.|||..|.. +++.++.||.|++- T Consensus 33 av~vN~~ivpr~~~~~~~L~~gD~IeIv 60 (66) T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLF 60 (66) T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEE T ss_pred EEEECCEECCHHHHHHCCCCCCCEEEEE T ss_conf 9999999848789423348997999999 No 49 >2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Probab=47.85 E-value=12 Score=17.02 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=36.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 34430268999998888899862121247887887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .+.|...++..|+.+.....-++-+ ..-++..+=.|.|||+-+.. ....|+.||.|.+=+ T Consensus 23 ~~~Tv~~ll~~L~~~~p~~~~~~~~-----~~~~l~~~v~v~vNg~~i~~~~~~~t~l~dgDeV~i~P 85 (90) T 2g1e_A 23 GISKISELLERLKVEYGSEFTKQMY-----DGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90) T ss_dssp SCCBHHHHHHHHHHHSCHHHHHHHC-----CSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHH-----HHCCHHHEEEEEECCEEECCCCCCCCCCCCCCEEEEEC T ss_conf 9998999999998678088999864-----12020020799885887044456565379999999978 No 50 >1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Probab=46.28 E-value=12 Score=17.07 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=22.2 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 24978788889413-534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) +-.-..|||..+.. -.+.|++||+|.|-. T Consensus 68 ssNGT~vNg~~l~~g~~~~L~~GD~i~lg~ 97 (143) T 1yj5_C 68 GVNPSTVGVHELKPGLSGSLSLGDVLYLVN 97 (143) T ss_dssp SSSCCEETTEECCTTCEEEECTTCEEESSS T ss_pred CCCCCEECCEEECCCCEEECCCCCEEEEEC T ss_conf 867747999996347517768999999945 No 51 >2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Probab=45.73 E-value=9.7 Score=17.58 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.4 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 978788889413534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .-+.|||+.+. ...|+.||+|.|-+ T Consensus 117 nGt~vNg~~v~--~~~L~~GD~i~iG~ 141 (162) T 2kfu_A 117 NGTYVNREPVD--SAVLANGDEVQIGK 141 (162) T ss_dssp SCEEETTBCCS--EEECCSSCEEEETT T ss_pred CCCEECCEECC--CEECCCCCEEEECC T ss_conf 75189999996--24899999999999 No 52 >1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* Probab=45.73 E-value=15 Score=16.39 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=15.8 Q ss_pred HCCCEEECCEEE-------------ECCCEEECCCCEEEEC Q ss_conf 249787888894-------------1353483388478861 Q gi|254780187|r 117 NHRHVLVNGRSV-------------NIGSYRCKEGDVIEVK 144 (206) Q Consensus 117 ~hg~i~vng~~v-------------~~ps~~~k~gd~I~~~ 144 (206) +.++|++||+++ |++. .+++||.|++= T Consensus 293 ~~~~V~i~g~~~pivGrvsMD~~~vDv~~-~~~vGD~V~l~ 332 (388) T 1bd0_A 293 QHFHVLVDGQKAPIVGRICMDQCMIRLPG-PLPVGTKVTLI 332 (388) T ss_dssp GGCEEEETTEEEEEESCCCSSCEEEECSS-CCCTTCEEEEE T ss_pred CCCEEEECCEEEEEEEEEECCEEEEECCC-CCCCCCEEEEE T ss_conf 79889999998058628713718998899-99999999998 No 53 >2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Probab=45.71 E-value=10 Score=17.38 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=17.4 Q ss_pred EEECCEEEE---CCCEEECCCCEEEEC Q ss_conf 878888941---353483388478861 Q gi|254780187|r 121 VLVNGRSVN---IGSYRCKEGDVIEVK 144 (206) Q Consensus 121 i~vng~~v~---~ps~~~k~gd~I~~~ 144 (206) |.|||..|. -.++.|+.||.|++- T Consensus 37 VevN~~iV~r~~w~~~~L~~gD~IEIv 63 (78) T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEFL 63 (78) T ss_dssp EEETTEECCTTHHHHCEECSSBCEEEC T ss_pred EEECCEECCHHHHCCCCCCCCCEEEEE T ss_conf 999999918788071358996999999 No 54 >1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Probab=44.89 E-value=12 Score=17.10 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=21.4 Q ss_pred HCCCEEECCEEEECCC---------EEECCCCEEEECC Q ss_conf 2497878888941353---------4833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGS---------YRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps---------~~~k~gd~I~~~~ 145 (206) +..-..|||++|..+. +.|+.||+|.+-+ T Consensus 74 S~NGT~vNg~~i~~~~~~~~~~~~~~~L~~gD~I~lG~ 111 (139) T 1mzk_A 74 SLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT 111 (139) T ss_dssp CSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS T ss_pred CCCCCEECCEECCCCCCCCCCCCCEEECCCCCEEEECC T ss_conf 66870899999746444545789868879999999799 No 55 >2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Probab=44.50 E-value=12 Score=16.89 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.5 Q ss_pred CEEECCEEEECCCEEECCCCEEEECC Q ss_conf 78788889413534833884788611 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -+.|||+.+. ...|+.||+|.|-+ T Consensus 109 Gt~vNg~~i~--~~~L~~gD~i~iG~ 132 (143) T 2kb3_A 109 GTYVNREPRN--AQVMQTGDEIQIGK 132 (143) T ss_dssp CCEETTEECS--EEECCTTEEEEETT T ss_pred CEEECCEECC--CEECCCCCEEEECC T ss_conf 6089999996--37999999999999 No 56 >2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* Probab=44.19 E-value=16 Score=16.24 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=33.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 34430268999998888899862121247887887624978788889413534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .|.|...|+..|..+-. .+.. .+=.+.||++.++ ..+.++.||.|.+=| T Consensus 24 ~~~tv~~l~~~L~~~~~------~~~~---------~~~~vavN~~~~~-~~~~l~dgDeVa~~P 72 (77) T 2q5w_D 24 QALTVQQFEDLLFERYP------QINN---------KKFQVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77) T ss_dssp SCEEHHHHHHHHHHHCG------GGTT---------CCCEEEETTEEEC-TTSEECTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHCC------CCCC---------EEEEEEECCEECC-CCCEECCCCEEEEEC T ss_conf 99989999999998769------5666---------1599998997979-995309979999979 No 57 >3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Probab=44.15 E-value=15 Score=16.43 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=23.8 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECCHHH Q ss_conf 24978788889413-534833884788611002 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ksk 148 (206) +..-..|||.++.- -.+.|+.||+|.+-.-++ T Consensus 115 S~nGt~vNg~~i~~~~~~~L~~GD~i~~G~~~~ 147 (158) T 3els_A 115 SSNGTCLNNVVIPGARYIELRSGDVLTLSEFEE 147 (158) T ss_dssp CSSCCEETTEECCTTCCEECCTTEEEESSSCGG T ss_pred CCCEEEECCEECCCCCEEECCCCCEEEECCCCC T ss_conf 998057999998899668879999999897566 No 58 >1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Probab=43.90 E-value=16 Score=16.21 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.8 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEEC Q ss_conf 24978788889413-53483388478861 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK 144 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~ 144 (206) +.....|||+++.. -++.|..||+|.+= T Consensus 105 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG 133 (164) T 1g3g_A 105 STNGTWLNGQKVEKNSNQLLSQGDEITVG 133 (164) T ss_dssp CSSCEEETTEEECTTEEEECCTTCEEEES T ss_pred CCCCEEECCEEECCCCEEECCCCCEEEEC T ss_conf 97543899999069986887899999988 No 59 >1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Probab=42.61 E-value=15 Score=16.33 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.2 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEEC Q ss_conf 24978788889413-53483388478861 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVK 144 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~ 144 (206) +-.-..|||..+.. -.+.|+.||+|.+- T Consensus 77 S~nGT~vNg~~i~~~~~~~L~~GD~I~iG 105 (127) T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVG 105 (127) T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEEC T ss_pred CCCCEEECCEEECCCCEEECCCCCEEEEC T ss_conf 75464999999069986994899999989 No 60 >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, biosynthetic protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Probab=42.39 E-value=15 Score=16.33 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=6.6 Q ss_pred EEECCEEEECC Q ss_conf 87888894135 Q gi|254780187|r 121 VLVNGRSVNIG 131 (206) Q Consensus 121 i~vng~~v~~p 131 (206) |.|||+.+.++ T Consensus 23 I~vNGk~~~~~ 33 (87) T 1tyg_B 23 LQLNGKDVKWK 33 (87) T ss_dssp EEETTEEECCS T ss_pred EEECCEEEECC T ss_conf 99999898868 No 61 >2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Probab=42.06 E-value=11 Score=17.19 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.4 Q ss_pred CCEEECCEEEEC-CCEEECCCCEEEEC Q ss_conf 978788889413-53483388478861 Q gi|254780187|r 119 RHVLVNGRSVNI-GSYRCKEGDVIEVK 144 (206) Q Consensus 119 g~i~vng~~v~~-ps~~~k~gd~I~~~ 144 (206) .-..|||.++.- -.+.|+.||+|.|= T Consensus 83 NGt~vNg~~l~~~~~~~L~~GD~I~iG 109 (145) T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQLG 109 (145) T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEES T ss_pred CCEEECCEECCCCCEEECCCCCEEEEC T ss_conf 875999999689961799999999969 No 62 >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Probab=41.68 E-value=9.7 Score=17.60 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=37.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 34430268999998888899862121247887887624978788889413534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .+.|...|+..|+.+-... .+.-|. .+-.+...=.|.|||+.++ ....|+.||.|.+=| T Consensus 35 ~~~Tv~~Ll~~L~~~~p~~-~~~l~~----~~~~~~~~v~v~vN~~~~~-~d~~L~dgDeVai~P 93 (98) T 1vjk_A 35 EGARVRDLIEEIKKRHEKF-KEEVFG----EGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFP 93 (98) T ss_dssp TTCBHHHHHHHHHHHCGGG-GGSCBC----SSSCTTSSBEEEETTBCCC-TTCBCCTTCEEEEES T ss_pred CCCCHHHHHHHHHHHCCHH-HHHHHH----HCCCCCCCEEEEECCEECC-CCCCCCCCCEEEEEC T ss_conf 9997999999999867157-888641----1014566479998889969-997809989999979 No 63 >1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Probab=36.87 E-value=14 Score=16.60 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=18.4 Q ss_pred CCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 49787888894135-34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) ...+.|||+.+... .+.|+.||+|.+-+ T Consensus 75 ~nGt~vng~~l~~~~~~~L~~Gd~i~iG~ 103 (118) T 1uht_A 75 SNGTLLNSNALDPETSVNLGDGDVIKLGE 103 (118) T ss_dssp SSCCEESSSBCCTTCEEECCTTEEEEETT T ss_pred CCCCEECCEECCCCCEEECCCCCEEEECC T ss_conf 78847999991799778999999999999 No 64 >1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Probab=36.02 E-value=16 Score=16.23 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=23.0 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 24978788889413-534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) +..-..|||.++.. -.+.|+.||+|++-. T Consensus 105 StNGt~vN~~~~~~~~~~~l~~gD~i~~~~ 134 (182) T 1qu5_A 105 GTNVSYLNNNRMIQGTKFLLQDGDEIKIIW 134 (182) T ss_dssp SSSCCEETTEECCSSEEEECCTTBCCEEEE T ss_pred CCCCCEECCEECCCCCEEECCCCCEEEECC T ss_conf 878508999991799868857999999854 No 65 >2cu3_A Unknown function protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus HB8} SCOP: d.15.3.2 PDB: 2htm_E Probab=35.45 E-value=21 Score=15.37 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=15.1 Q ss_pred CEEECCEEEEC---CCEEECCCCEEEE Q ss_conf 78788889413---5348338847886 Q gi|254780187|r 120 HVLVNGRSVNI---GSYRCKEGDVIEV 143 (206) Q Consensus 120 ~i~vng~~v~~---ps~~~k~gd~I~~ 143 (206) -|-||+..|.. +++.++.||.|++ T Consensus 31 aV~vN~~ivpr~~~~~~~L~~gD~IeI 57 (64) T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64) T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEE T ss_pred EEEECCEEECHHHCCCCCCCCCCEEEE T ss_conf 999999990888828310899899999 No 66 >1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Probab=35.32 E-value=5.9 Score=18.97 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=22.9 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECCH Q ss_conf 24978788889413-5348338847886110 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQK 146 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~k 146 (206) +-....|||+.+.. ..+.|.+||+|++-+. T Consensus 75 S~Ngt~vNg~~l~~~~~~~L~~GD~i~l~~~ 105 (119) T 1ujx_A 75 GVNPSTVGVQELKPGLSGSLSLGDVLYLVNG 105 (119) T ss_dssp SSSCCBSSSSBCCTTCEEEEETTCCCBCBTT T ss_pred CCCCEEECCEEECCCCEEECCCCCEEEEECC T ss_conf 9785589679926898058489999999088 No 67 >1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} SCOP: b.18.1.16 PDB: 1oko_A* 1uoj_A 2vxj_A* Probab=35.01 E-value=6.3 Score=18.79 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=19.1 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 9787888894135348338847886110 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) |-|..|.+-=...|..+++||+|++-.+ T Consensus 4 GsVpANaenGq~TglilkqGDiIsivA~ 31 (121) T 1l7l_A 4 GEVLANNEAGQVTSIIYNPGDVITIVAA 31 (121) T ss_dssp EEEETTCTTCEEEEEEECTTCCEEEEEE T ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEE T ss_conf 5245444479635788548989998460 No 68 >3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A* Probab=34.81 E-value=22 Score=15.30 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=21.5 Q ss_pred CEEECCEEEECCC---EEECCCCEEEECCHHH Q ss_conf 7878888941353---4833884788611002 Q gi|254780187|r 120 HVLVNGRSVNIGS---YRCKEGDVIEVKQKSK 148 (206) Q Consensus 120 ~i~vng~~v~~ps---~~~k~gd~I~~~~ksk 148 (206) .|.++|+..+.+. ..|+|||.|+|.+... T Consensus 158 ~V~~DG~~~~~~~G~~l~L~PGesiTI~Pg~~ 189 (246) T 3kmh_A 158 TVVIDGCRQKHTAGSQLRLSPGESICLPPGLY 189 (246) T ss_dssp EEEETTEEEEECTTCEEEECTTCEEEECTTEE T ss_pred EEECCCEEEEECCCCEEEECCCCEEECCCCCE T ss_conf 78219969886799779878999698079980 No 69 >1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Probab=33.17 E-value=9.9 Score=17.52 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=21.4 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 24978788889413-534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) +..-..|||+++.. -.+.|+.||+|.+-. T Consensus 66 S~NGt~vNg~~i~~~~~~~L~~GD~I~lg~ 95 (116) T 1lgp_A 66 STSGTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116) T ss_dssp SSSCCCCCCCCCCCSSCCCCCTTCEEEEEC T ss_pred CCCEEEECCEEECCCCEEECCCCCEEEEEE T ss_conf 764169999990699868899999999941 No 70 >1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Probab=31.66 E-value=23 Score=15.18 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=23.1 Q ss_pred HCCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 24978788889413-534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) +-.-..|||+++.. -.+.+..||+|.+-. T Consensus 81 StNGt~vN~~~i~~~~~~~L~~GD~I~lg~ 110 (158) T 1dmz_A 81 GTNVSYLNNNRMIQGTKFLLQDGDEIKIIW 110 (158) T ss_dssp STTCCEETTEECCSSEEEECCSSCCEESCC T ss_pred CCCCEEECCEEECCCCEEECCCCCEEEECC T ss_conf 879848999993799828877999999832 No 71 >3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Probab=31.35 E-value=3.9 Score=20.19 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=34.4 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCC-CCC-CEEEECCCCCEEE Q ss_conf 497878888941353483388478861100226999987752168-999-6278812431899 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVP-EYISVNHDNMVAT 178 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~-~~P-~wLevd~~~l~g~ 178 (206) .-+|.-||+.+.+|+-.+.|||+|.+++..+-- ++- -+- +-+++|...++|. T Consensus 131 ~~~ViRdG~~~~I~~~~Lv~GDiv~l~~G~~iP---------aD~~li~g~~l~vdeS~LTGE 184 (885) T 3b8c_A 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIP---------ADARLLEGDPLKVDQSALTGE 184 (885) T ss_dssp CCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCS---------SCCCCCCSSCBCCCCCSTTCC T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEE---------EEEEEEECCCCEEECCCCCCC T ss_conf 269999999999888998989789999979997---------469999523637985345688 No 72 >2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Probab=26.11 E-value=22 Score=15.31 Aligned_cols=29 Identities=0% Similarity=-0.030 Sum_probs=19.8 Q ss_pred HCCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 249787888894135-34833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) +-....|||.++..- -+.|+.||+|.|-. T Consensus 98 S~NGT~vn~~~l~~~~~~~L~~gd~I~~G~ 127 (140) T 2jpe_A 98 STHGTFLGHIRLEPHKPQQIPIDSTVSFGA 127 (140) T ss_dssp CSSCEESSSCEECSSSCCEECTTCCBBCSS T ss_pred CCCCEEEEEEEECCCCEEECCCCCEEEECC T ss_conf 888718902894589607989999999848 No 73 >2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Probab=23.70 E-value=29 Score=14.48 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.0 Q ss_pred EEEECCCEEECCCCEEEECCHHH Q ss_conf 89413534833884788611002 Q gi|254780187|r 126 RSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 126 ~~v~~ps~~~k~gd~I~~~~ksk 148 (206) +...+|...+.+||+|.+++... T Consensus 33 ~~~~V~~~~l~~GDii~v~~G~~ 55 (124) T 2kij_A 33 SEEQVDVELVQRGDIIKVVPGGK 55 (124) T ss_dssp EEEEEETTTCCTTCEEECCTTCB T ss_pred EEEEEEHHHCCCCCEEEECCCCE T ss_conf 06998989978699999999999 No 74 >1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ... Probab=23.05 E-value=22 Score=15.32 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=32.2 Q ss_pred CCEEECCEE--EECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE Q ss_conf 978788889--413534833884788611002269999877521689996278812431899 Q gi|254780187|r 119 RHVLVNGRS--VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 (206) Q Consensus 119 g~i~vng~~--v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~ 178 (206) -.|..||+. ..|++-.|.|||+|.+++...- +. +.. ... .--.-+.||...|+|. T Consensus 127 ~~V~R~g~~~~~~I~~~~Lv~GDIV~l~~g~~i-Pa--D~~-ll~-g~~~~l~VdeS~LTGE 183 (994) T 1wpg_A 127 GKVYRADRKSVQRIKARDIVPGDIVEVAVGDKV-PA--DIR-ILS-IKSTTLRVDQSILTGE 183 (994) T ss_dssp EEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBC-CS--EEE-EEE-ECSSCCEEECHHHHSC T ss_pred EEEEECCCCEEEEEEHHHCCCCCEEEECCCCEE-EE--EEE-EEE-EEECCEEEECCCCCCC T ss_conf 699999974699970899896878999898999-63--389-999-7416848887625577 No 75 >3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Probab=20.48 E-value=39 Score=13.65 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=16.1 Q ss_pred CCEEECCEEEECC-CEEECCCCEEEECCHH Q ss_conf 9787888894135-3483388478861100 Q gi|254780187|r 119 RHVLVNGRSVNIG-SYRCKEGDVIEVKQKS 147 (206) Q Consensus 119 g~i~vng~~v~~p-s~~~k~gd~I~~~~ks 147 (206) .-..|||.++.-- .+.|+.||+|.+-..+ T Consensus 164 NGTfVNg~rI~~~~~~~L~~gD~I~fG~s~ 193 (205) T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTLSEFE 193 (205) T ss_dssp SCCEETTEECCBTSCEECCTTCEEESSSSG T ss_pred CCEEECCEECCCCCEEECCCCCEEEECCCC T ss_conf 734699999689963787999999978867 No 76 >2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Probab=20.22 E-value=40 Score=13.62 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=24.9 Q ss_pred HHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 87624978788889413534833884788611 Q gi|254780187|r 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 114 q~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ++|..|.=.|-++.-+-.--.+++||.|.+.. T Consensus 13 ~~I~~G~KtiE~Rl~d~k~~~ik~GD~I~F~n 44 (109) T 2z0t_A 13 ELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEG 44 (109) T ss_dssp HHHHTTSCCEEEEECCTTGGGCCTTCEEEEGG T ss_pred HHHHCCCCEEEEEECHHHHHHCCCCCEEEEEC T ss_conf 99876998899980426687289999999968 Done!