HHSEARCH alignment of GI: 254780187 and SCOP domain: d1p9ka_

Alignment
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=98.62  E-value=1.9e-09  Score=79.06  Aligned_cols=55  Identities=11%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             9988888998621212478878876249787888894135348338847886110
Q gi|254780187|r   92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      ...|||.+|..+|+|.|+.+|+++|..|+|.|||++++.|++.|.+||+|++..+
T Consensus        19 ~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vdG~   73 (79)
T d1p9ka_          19 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH   73 (79)
T ss_dssp             SCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred             CCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCE
T ss_conf             8288999998778846899999999939860399893645634999999999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: YbcJ-like
domain: Hypothetical protein YbcJ
species: Escherichia coli [TaxId: 562]