PSIBLAST alignment of GI: 254780187 and protein with PDB id: 1vs5
gi|116666551|pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 206
>gi|116666603|pdb|1VS7|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 206
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56
M++ K K+ RR G +L+ + ++T+ PG HG RK + S +G+QLR KQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59
Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116
K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V
Sbjct: 60 KVRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118
Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175
+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M
Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178
Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
TF R P + +L+VE YS+
Sbjct: 179 EGTFKRKPERSD---LSADINEHLIVELYSK 206