RPSBLAST alignment of GI: 254780187 and protein with PDBid: 1c05

>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Length = 159

 Score =  158 bits (400), Expect = 1e-39
 Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%)

Query: 44  KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103
           K S +GLQL+ KQK++  YG ++E++FR  F+EA +  G    N +  LESRLD +VYR 
Sbjct: 2   KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRL 60

Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163
               T   ARQ V H H+LV+G  VNI SYR K G  I V++KS+ L  + EA + A   
Sbjct: 61  GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNY 119

Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
           +P+Y+S + + M  T+ R+P    ++P    +   L+VEFYSR
Sbjct: 120 IPDYLSFDPEKMEGTYTRLP-ERSELPAE--INEALIVEFYSR 159