RPSBLAST alignment of GI: 254780187 and protein with PDBid: 2vqe
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Length = 209
Score = 185 bits (470), Expect = 8e-48
Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%)
Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54
M + ++ RR G L+ PK + R Y PG HGQ+R +PS + ++LR
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60
Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114
KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ
Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173
V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179
Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
M F+R+P +D+ PV LV+EFYSR
Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209