RPSBLAST alignment of GI: 254780187 and protein with PDBid: 2vqe

>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Length = 209
 Score =  185 bits (470), Expect = 8e-48
 Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%)

Query: 1   MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54
           M +      ++ RR G  L+        PK  +  R Y PG HGQ+R  +PS + ++LR 
Sbjct: 1   MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60

Query: 55  KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114
           KQK+++ YG ISE++FR++F+EA + +G T    +  LESRLD +VYR  F  +   ARQ
Sbjct: 61  KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119

Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173
            V H H+ VNGR V++ SYR + GD I V +KS+ L  + +  +  + R V  ++S++ +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179

Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
            M   F+R+P   +D+  PV     LV+EFYSR
Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209