RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4
[Candidatus Liberibacter asiaticus str. psy62]
(206 letters)
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA,
tRNA, transfer, eryThr ketolide, macrolide, antibiotic,
EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D
1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D*
2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D*
2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Length = 205
Score = 208 bits (531), Expect = 8e-55
Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 10/204 (4%)
Query: 8 KHKIDRRIGENLWGRPKSPV----NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63
K K+ RR G +L+ + PG HG R+ + S +G+QLR KQK+++ YG
Sbjct: 7 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYG 65
Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123
+ E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V
Sbjct: 66 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 124
Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182
NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R
Sbjct: 125 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 184
Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206
P D+ + +L+VE YS+
Sbjct: 185 PER-SDLSADI--NEHLIVELYSK 205
>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D
3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D
2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ...
Length = 206
Score = 190 bits (483), Expect = 3e-49
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 10/211 (4%)
Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56
M++ K K+ RR G +L+ R PG HG R+ + S +G+QLR KQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59
Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116
K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V
Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118
Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175
+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M
Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178
Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
TF R P D+ + +L+VE YS+
Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D*
1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D*
1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G
2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Length = 209
Score = 185 bits (470), Expect = 8e-48
Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%)
Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54
M + ++ RR G L+ PK + R Y PG HGQ+R +PS + ++LR
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60
Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114
KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ
Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173
V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179
Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
M F+R+P +D+ PV LV+EFYSR
Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 201
Score = 164 bits (416), Expect = 1e-41
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%)
Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60
MS+ + K RR+G K P G L Q R K S + ++L KQK++
Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56
Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120
+YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH
Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115
Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179
+LVNGR V+I SYRCK D I + + K +A + + L+ ++P+++++N
Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNPFPYKGLV 175
Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206
+I + + LVVE+YSR
Sbjct: 176 NQII---DSKWVGLKINELLVVEYYSR 199
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology,
possible helix-turn-helix motif; NMR {Bacillus
stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A
1qd7_C
Length = 159
Score = 158 bits (400), Expect = 1e-39
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103
K S +GLQL+ KQK++ YG ++E++FR F+EA + G N + LESRLD +VYR
Sbjct: 2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRL 60
Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163
T ARQ V H H+LV+G VNI SYR K G I V++KS+ L + EA + A
Sbjct: 61 GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNY 119
Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206
+P+Y+S + + M T+ R+P ++P + L+VEFYSR
Sbjct: 120 IPDYLSFDPEKMEGTYTRLP-ERSELPAE--INEALIVEFYSR 159
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC
7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Length = 158
Score = 100 bits (251), Expect = 2e-22
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61
S R ++ K+ G + K + S+ R++ + +++ +
Sbjct: 16 SSRLDAELKLAGEFGL----KNKKEIYRISFQLSKI---RRAARDLLTRDEKDPKRLFEG 68
Query: 62 YGDISEKKFRSIFKEADRSRGD--TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119
+ + R D+ + D + + FLE RL T VY+ ++ AR + R
Sbjct: 69 NA-LIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQR 127
Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVK 144
H+ V + VNI S+ + +
Sbjct: 128 HIAVGKQIVNIPSFMVRLDSEKHID 152
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit,
EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A
{Saccharomyces cerevisiae} SCOP: i.1.1.1
Length = 179
Score = 81.9 bits (202), Expect = 1e-16
Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS--IFKEADRSRGDTSHNLISFLESR 95
+ R++ + +++ + + + R + ++ + + + FLE R
Sbjct: 32 SKIRRAARDLLTRDEKDPKRLFEGNA-LIRRLVRVGVLSEDKKKLDYVLALKVEDFLERR 90
Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144
L T VY+ ++ AR + RH+ V + VNI S+ + +
Sbjct: 91 LQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHID 139
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog;
S4 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 76.7 bits (189), Expect = 4e-15
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKS 147
RL T++ + + + AA FV HV V V ++ D + S
Sbjct: 4 GSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS 63
Query: 148 K 148
K
Sbjct: 64 K 64
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein,
E.coli, montreal-kingston bacterial structural genomics
initiative, BSGI; NMR {Escherichia coli K12} SCOP:
d.66.1.6
Length = 79
Score = 54.0 bits (130), Expect = 3e-08
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146
+L L ++ + + A+ + V V+G + G +
Sbjct: 14 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73
Query: 147 SKQLAS 152
S Q+ +
Sbjct: 74 SVQVVA 79
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat
shock proteins, protein-RNA interactions, ribosome,
structural genomics; 2.00A {Escherichia coli} SCOP:
d.66.1.3 PDB: 3bbu_A
Length = 133
Score = 45.4 bits (107), Expect = 9e-06
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148
E RLD ++ A+F T AR+ + V NG+ + S + + ++Q +
Sbjct: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGND 62
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding,
unknown function; NMR {Helicobacter pylori}
Length = 92
Score = 42.2 bits (99), Expect = 8e-05
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154
R+D + V A N V +NG S K GD I + +
Sbjct: 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKA-SKEVKAGDTISLHYLKGIEEYTI 60
Query: 155 EASQLAERDVPE 166
+ +
Sbjct: 61 LQIPALKNVPRK 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.2 bits (86), Expect = 0.003
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 53/167 (31%)
Query: 71 RSIFKEADRS--RGDTSHNLISFLESRLDT-IVYRAKFVPTIFAARQFVN------HRHV 121
E + G+ H L + L DT +V + + AR
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 122 LVNGRSVNIGS--------------------------YRCKEGDVIEVKQKSKQLASVLE 155
L R+V G+ Y GD+I+ ++ L+ ++
Sbjct: 145 LF--RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--SAETLSELIR 200
Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY--------PVI 194
+ AE+ + + + + ++ PS+ D Y P+I
Sbjct: 201 TTLDAEKVFTQGL----N--ILEWLENPSNTPDKDYLLSIPISCPLI 241
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
structure initiative; HET: MSE; 1.53A {Streptococcus
thermophilus lmg 18311}
Length = 291
Score = 33.3 bits (76), Expect = 0.040
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152
R+D + Y+ T A++ V V ++NG + + +G +++K + + S
Sbjct: 8 RVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVS 67
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus
dsRNA, molecular motor, packaging ATPase, hexameric
helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB:
2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A*
1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Length = 331
Score = 30.0 bits (67), Expect = 0.38
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109
+R + + Y D I + + + ++S L ++ A T
Sbjct: 154 ATVRFGEPLSGYNTD-FNVFVDDIARAM-------LQHRVIVIDS-LKNVIGAAGGNTTS 204
Query: 110 FAARQFVNHRHVLVNG 125
+ +
Sbjct: 205 GGISRGAFDLLSDIGA 220
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 144 KQKSKQLASVLEAS-QL-AERDVPEYISVNHDNMVATF 179
KQ K+ L+AS +L A+ P +++ AT
Sbjct: 19 KQALKK----LQASLKLYADDSAPA-LAIK-----ATM 46
Score = 27.3 bits (59), Expect = 2.5
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 6/18 (33%)
Query: 55 KQKMKKY------YGDIS 66
KQ +KK Y D S
Sbjct: 19 KQALKKLQASLKLYADDS 36
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 27.6 bits (60), Expect = 2.0
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142
++++ + VLVNG+ + + G+ +
Sbjct: 35 IKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 65
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural
genomics, lyase; 1.59A {Haemophilus influenzae} SCOP:
d.265.1.3 d.66.1.5
Length = 243
Score = 27.7 bits (60), Expect = 2.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141
A + + V +NG V GS + + D I
Sbjct: 20 ATKAIRQSAVKINGEIVKSGSVQISQEDEI 49
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 27.0 bits (59), Expect = 3.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53
GE R SP + +GPGL YF +Q
Sbjct: 7 GETGGERQLSPEKSEIWGPGLKADVVL-PARYFYIQAV 43
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 25.5 bits (55), Expect = 7.9
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146
A +++ +V +NG+ IG + K GDV++V +
Sbjct: 24 ADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQ 57
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Length = 213
Score = 25.5 bits (56), Expect = 8.4
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143
L+S + L K A + + + V V+G++V + DVIE+
Sbjct: 10 LLSIIRDYL-------KLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58
>3gwc_A TS, tsase, thymidylate synthase THYX; FAD, fdump, flavoprotein,
methyltransferase, nucleotide biosynthesis, transferase;
HET: FAD UFP; 1.90A {Mycobacterium tuberculosis} PDB:
3hzg_A* 2af6_A* 2gq2_A*
Length = 258
Score = 25.5 bits (55), Expect = 8.8
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 108 TIFAARQFVNHRHVLVNGRS 127
+ + + HRH + S
Sbjct: 86 SRSCTHELIRHRHFSYSQLS 105
>2kt1_A Phosphatidylinositol 3-kinase regulatory subunit beta; structural
genomics, northeast structural genomics consortium
(NESG), target HR5531E, PSI-2; NMR {Homo sapiens}
Length = 88
Score = 25.4 bits (55), Expect = 9.2
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV-----ATFVRIPSSLK 187
GDV+ V + + Q V E + + V +N T+V L+
Sbjct: 25 LLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPLE 82
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 25.5 bits (55), Expect = 9.5
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109
+ ++ +K + + AD+ NL S+ SR+ + +
Sbjct: 139 WEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREY 193
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 25.3 bits (55), Expect = 9.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDT 84
K +K+ + + R IF+E D S+ D+
Sbjct: 34 KDFLKELNIQVDDGYARKIFRECDHSQTDS 63
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,682,940
Number of extensions: 72399
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 29
Length of query: 206
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 118
Effective length of database: 3,559,758
Effective search space: 420051444
Effective search space used: 420051444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)