RPSBLAST alignment of GI: 254780187 and SCOP domain: d2uubd1

Alignment

>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} Length = 208

 Score =  177 bits (450), Expect = 6e-46
 Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 11/206 (5%)

Query: 8   KHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61
             ++ RR G  L+ +      PK  +  R Y PG HGQ+R  +PS + ++LR KQK+++ 
Sbjct: 7   VCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRI 66

Query: 62  YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121
           YG ISE++FR++F+EA + +G T    +  LESRLD +VYR  F  +   ARQ V H H+
Sbjct: 67  YG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHI 125

Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFV 180
            VNGR V++ SYR + GD I V +KS+ L  + +  +  + R V  ++S++ + M   F+
Sbjct: 126 TVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFL 185

Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206
           R+P   +D+  PV     LV+EFYSR
Sbjct: 186 RLPDR-EDLALPV--NEQLVIEFYSR 208

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Thermus thermophilus [TaxId: 274]