BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4
[Candidatus Liberibacter asiaticus str. psy62]
(206 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 206
Score = 424 bits (1091), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60
MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK
Sbjct: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60
Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120
YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH
Sbjct: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120
Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180
VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV
Sbjct: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180
Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206
RIPSSLKDVPYPVIMQPNLVVEFYSR
Sbjct: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206
>gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 26.9 bits (58), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 155 EASQLAERD-VPEYISVNHD-NMVATFV---RIPSSLKDVPYPVI 194
EAS AE++ + V HD +M TF+ RI S+++ +PYP+I
Sbjct: 109 EASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPII 153
>gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 25.4 bits (54), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNL 88
+Y DI EKKF++I ++ D +NL
Sbjct: 354 HYADIREKKFKAIIEKIDPIISQQDNNL 381
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 474
Score = 23.1 bits (48), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 166 EYISVNHDNMVATFVRIPSSL 186
E+I V D TF+R+PS +
Sbjct: 157 EWIVVEADESDGTFIRLPSDI 177
>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 267
Score = 22.7 bits (47), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 143 VKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186
+ QLA + + +R P ++V+ D M+ V PSS+
Sbjct: 29 LHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSM 72
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 23 PKSPVNTRSYGPGLHG 38
PKS + +YGP +HG
Sbjct: 100 PKSIYDNVAYGPRIHG 115
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 21.9 bits (45), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 157 SQLAERDVPEYISVN----HDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206
++L +RD+ + ++ HD + RIP LK + + P ++E SR
Sbjct: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
>gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 21.9 bits (45), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL--------ESRLDTIV 100
G LR + + I + ++RS+ E + R D + +L E +DT V
Sbjct: 20 GAGLRISSTLASHRSSIRDHEYRSLLAEENALRAD-----VLYLDREDQARREGIMDTGV 74
Query: 101 YRAKFV 106
+R K V
Sbjct: 75 FRMKAV 80
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,914
Number of Sequences: 1233
Number of extensions: 4661
Number of successful extensions: 16
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 11
length of query: 206
length of database: 328,796
effective HSP length: 70
effective length of query: 136
effective length of database: 242,486
effective search space: 32978096
effective search space used: 32978096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)