HHsearch alignment for GI: 254780190 and conserved domain: cd01362
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=1300.59 Aligned_cols=455 Identities=66% Similarity=1.016 Sum_probs=452.5
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02575587633863243217799887608778877899999999999999999999808999899999999999998587
Q gi|254780190|r 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGK 84 (463)
Q Consensus 5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~ 84 (463)
T Consensus 1 R~E~D~lG~~~vp~~~~yG~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~ 80 (455)
T cd01362 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGK 80 (455)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98607887712777563269999999674988988999999999999999999999859999999999999999998499
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41126500220242100168730578999999732357986430744653012571234456789998663368789999
Q gi|254780190|r 85 LDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 (463)
Q Consensus 85 ~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l 164 (463)
T Consensus 81 ~~~~F~vd~~Q~GaGTstNMN~NEViAn~A~e~~g~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l 160 (455)
T cd01362 81 LDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPAL 160 (455)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 71351452000688763324099999999999847667888876930010023466764227999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHH
Q ss_conf 99999999998750786432144001760031999999999999822899999788530066887011045443635579
Q gi|254780190|r 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 (463)
Q Consensus 165 ~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~ 244 (463)
T Consensus 161 ~~L~~~L~~Ka~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAvGTG~n~~~~f~~ 240 (455)
T cd01362 161 KHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAE 240 (455)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999984477400541363476600899999999989999999999999999860577443478788812679
Q ss_pred HHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99999998608850764207887612412899899999876438887999999827733472167506889875644554
Q gi|254780190|r 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGK 324 (463)
Q Consensus 245 ~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K 324 (463)
T Consensus 241 ~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP~~q~GSSIMPgK 320 (455)
T cd01362 241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGK 320 (455)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999988629997116878999848709999999999999999999999999827765684355479999977878998
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf 56246788765200121012355532234576653002344322445899999999999999873490078999988743
Q gi|254780190|r 325 VNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 (463)
Q Consensus 325 ~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~ 404 (463)
T Consensus 321 vNPv~~E~v~~v~~~ViGnd~ti~~a~~~G~~ELNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~ 400 (455)
T cd01362 321 VNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLER 400 (455)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 79889999999999996659999986635305664228389998888999999999999999876588889999999985
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHH
Q ss_conf 9736620110553899999999999829998999998589998899985188984
Q gi|254780190|r 405 SLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM 459 (463)
Q Consensus 405 s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~m 459 (463)
T Consensus 401 S~~l~TaL~p~iGY~~aa~iak~A~~~g~slrev~le~~~ls~eeld~lldP~~m 455 (455)
T cd01362 401 SLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 7438988323763999999999999939989999988599999999986592129