HHsearch alignment for GI: 254780190 and conserved domain: cd01362

>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00  E-value=0  Score=1300.59  Aligned_cols=455  Identities=66%  Similarity=1.016  Sum_probs=452.5

Q ss_pred             CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             02575587633863243217799887608778877899999999999999999999808999899999999999998587
Q gi|254780190|r    5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGK   84 (463)
Q Consensus         5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~   84 (463)
T Consensus         1 R~E~D~lG~~~vp~~~~yG~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~   80 (455)
T cd01362           1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGK   80 (455)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98607887712777563269999999674988988999999999999999999999859999999999999999998499


Q ss_pred             CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             41126500220242100168730578999999732357986430744653012571234456789998663368789999
Q gi|254780190|r   85 LDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL  164 (463)
Q Consensus        85 ~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l  164 (463)
T Consensus        81 ~~~~F~vd~~Q~GaGTstNMN~NEViAn~A~e~~g~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l  160 (455)
T cd01362          81 LDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPAL  160 (455)
T ss_pred             CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             71351452000688763324099999999999847667888876930010023466764227999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHH
Q ss_conf             99999999998750786432144001760031999999999999822899999788530066887011045443635579
Q gi|254780190|r  165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE  244 (463)
Q Consensus       165 ~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~  244 (463)
T Consensus       161 ~~L~~~L~~Ka~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAvGTG~n~~~~f~~  240 (455)
T cd01362         161 KHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAE  240 (455)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             99999999999984477400541363476600899999999989999999999999999860577443478788812679


Q ss_pred             HHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             99999998608850764207887612412899899999876438887999999827733472167506889875644554
Q gi|254780190|r  245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGK  324 (463)
Q Consensus       245 ~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K  324 (463)
T Consensus       241 ~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP~~q~GSSIMPgK  320 (455)
T cd01362         241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGK  320 (455)
T ss_pred             HHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             99999988629997116878999848709999999999999999999999999827765684355479999977878998


Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf             56246788765200121012355532234576653002344322445899999999999999873490078999988743
Q gi|254780190|r  325 VNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR  404 (463)
Q Consensus       325 ~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~  404 (463)
T Consensus       321 vNPv~~E~v~~v~~~ViGnd~ti~~a~~~G~~ELNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~  400 (455)
T cd01362         321 VNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLER  400 (455)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf             79889999999999996659999986635305664228389998888999999999999999876588889999999985


Q ss_pred             CCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHH
Q ss_conf             9736620110553899999999999829998999998589998899985188984
Q gi|254780190|r  405 SLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM  459 (463)
Q Consensus       405 s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~m  459 (463)
T Consensus       401 S~~l~TaL~p~iGY~~aa~iak~A~~~g~slrev~le~~~ls~eeld~lldP~~m  455 (455)
T cd01362         401 SLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM  455 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf             7438988323763999999999999939989999988599999999986592129