RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus
Liberibacter asiaticus str. psy62]
         (463 letters)



>gnl|CDD|179045 PRK00485, fumC, fumarate hydratase; Reviewed.
          Length = 464

 Score =  891 bits (2306), Expect = 0.0
 Identities = 301/463 (65%), Positives = 357/463 (77%)

Query: 1   MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60
           M  TR E+DS G ++V  D  WGAQ QRSLENF IG E+ P  +IRAL ++K+AAARVN 
Sbjct: 1   MMETRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALALLKKAAARVNA 60

Query: 61  ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
           ELG LD +  +AIV A++EVI GK DDHFPL VWQTGSGTQSNMNVNEVI+NRA E+LGG
Sbjct: 61  ELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGG 120

Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
            +GSK PVHPNDHVN+ QSSNDT+PTA+HIA    IV RLLP L +L   L  K  +F D
Sbjct: 121 ELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFAD 180

Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
           I+KIGRTH QDATPLTLGQEFSGYA Q+++ I+RIE  L  LYELA GGTAVGTGLN   
Sbjct: 181 IVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHP 240

Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
           GFAE+VA+ + ++TGLPF+TAPNKFEALA HDA+    GA+ T A +L KIANDIR+L S
Sbjct: 241 GFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLAS 300

Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
           GPR GLGE+ LPENEPGSSIMPGKVNPTQCEA+T VCA + GN AA+TFA SQG+FELNV
Sbjct: 301 GPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNV 360

Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
           +KP+IAYN LQSI+LL+D++ SF  +C+ GI+  +E I+  L RSLMLVTAL   IGYD 
Sbjct: 361 FKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDK 420

Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
           A+ IAKKAH    TLKE A+  G ++  E+D  V PEKM  P 
Sbjct: 421 AAKIAKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGPG 463


>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II.  Putative
           fumarases from several species (Mycobacterium
           tuberculosis, Streptomyces coelicolor, Pseudomonas
           aeruginosa) branch deeply, although within the same
           branch of a phylogenetic tree rooted by aspartate
           ammonia-lyase sequences, and score between the trusted
           and noise cutoffs.
          Length = 458

 Score =  747 bits (1930), Expect = 0.0
 Identities = 302/456 (66%), Positives = 357/456 (78%)

Query: 5   RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGK 64
           R E+DS G ++V  D+YWGAQ QRSLENFKIG EK PL +I A  I+K+AAA VN +LGK
Sbjct: 2   RIEKDSMGEIQVPADKYWGAQTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGK 61

Query: 65  LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124
           LD K  +AIV+A++E++ GKLDDHFPLVVWQTGSGTQSNMNVNEVI+NRAIE+LGG +GS
Sbjct: 62  LDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGS 121

Query: 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKI 184
           K PVHPNDHVN  QSSNDT+PTA+HIA    I ++L+P L NL   L  K  +F  I+KI
Sbjct: 122 KQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKI 181

Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244
           GRTH QDATPLTLGQEFSGY  Q+++ ++RI  +L  LYELA GGTAVGTGLNT  GF E
Sbjct: 182 GRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPGFDE 241

Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
           KVA+ I   TGLPF+TAPNKFEALA HDAI   HGA+ T A +L KIANDIR+LGSGPR 
Sbjct: 242 KVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRC 301

Query: 305 GLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM 364
           GLGEL +PENEPGSSIMPGKVNPTQCEA+T VC  + GN A I FA SQG+FELNV+KP+
Sbjct: 302 GLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPV 361

Query: 365 IAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMI 424
           I YN LQS++LLSD+++SF  +C+ GI+  KE IQ  LN SLMLVTAL   IGYDNA+ I
Sbjct: 362 IIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAKI 421

Query: 425 AKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460
           AKKAH    TLKE A+  GL+S  E+D  V PE+M+
Sbjct: 422 AKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMV 457


>gnl|CDD|177743 PLN00134, PLN00134, fumarate hydratase; Provisional.
          Length = 458

 Score =  740 bits (1912), Expect = 0.0
 Identities = 300/454 (66%), Positives = 355/454 (78%), Gaps = 2/454 (0%)

Query: 11  FGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARVNIELGKLDPK 68
            G ++V  D+ WGAQ QRSL+NF+IG   E+ P  I+RA GI+K+AAA+VN+E G LDP 
Sbjct: 1   MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPD 60

Query: 69  IGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPV 128
           IG+AI++A++EV  GKLDDHFPLVVWQTGSGTQ+NMN NEVI+NRA EILGG +G KSPV
Sbjct: 61  IGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPV 120

Query: 129 HPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTH 188
           HPNDHVN  QSSNDT+PTA+HIA A  I  RL+P L+ LH +L  K  +F+DI+KIGRTH
Sbjct: 121 HPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTH 180

Query: 189 TQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQ 248
            QDA PLTLGQEFSGYATQVK  + R++ TL  LYELAQGGTAVGTGLNT  GF EK+A 
Sbjct: 181 LQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAA 240

Query: 249 NIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGE 308
            + + TGLPF+TAPNKFEALA HDA     GA+NT A +L KIANDIR LGSGPR GLGE
Sbjct: 241 AVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGE 300

Query: 309 LMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYN 368
           L LPENEPGSSIMPGKVNPTQCEA+T VCA + GNH AIT   S GHFELNV+KP+IAYN
Sbjct: 301 LNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYN 360

Query: 369 VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMIAKKA 428
           +L SI+LL D+  SF  NC+ GI+A +E I   L+ SLMLVTAL  KIGYD A+ +AKKA
Sbjct: 361 LLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKKA 420

Query: 429 HHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
           H   TTLKE A+  G+++A E+D +V PEKM  P
Sbjct: 421 HKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGP 454


>gnl|CDD|183393 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
          Length = 472

 Score =  562 bits (1452), Expect = e-161
 Identities = 210/465 (45%), Positives = 283/465 (60%), Gaps = 3/465 (0%)

Query: 1   MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARV 58
           M NTR E+D  G  +V  D Y+G    R++ENF I   K      +IRAL ++K+AAA  
Sbjct: 2   MMNTRIEKDLLGEREVPADAYYGIHTLRAVENFPISGVKISDYPELIRALAMVKKAAALA 61

Query: 59  NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118
           N ELG LD +  +AIV A +E++ GKL D F + V Q G+GT +NMN NEVI+NRA+E+L
Sbjct: 62  NKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELL 121

Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178
           G   G    VHPNDHVN+ QS+ND YPTAI IA    +  +LL  L  L  A   K  +F
Sbjct: 122 GHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL-RKLLDALEQLQEAFEAKAKEF 180

Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238
            DI+K+GRT  QDA P+TLGQEF  YA  +    KR+    + L E+  G TA+GTGLN 
Sbjct: 181 ADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNA 240

Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
           P G+ E V + + +ITGLP + A +  EA     A     GA+   A  L KI ND+R L
Sbjct: 241 PPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLL 300

Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
            SGPR+GL E+ LP  + GSSIMPGKVNP   E + QVC  + GN   +T A   G  EL
Sbjct: 301 SSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLEL 360

Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
           NV +P+IAYN+ +SI +L+++  +    CI+GI A +E  +  +  S+ +VTAL   IGY
Sbjct: 361 NVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGY 420

Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
           +NA+ IAK+A     +++E  +  GL++  E D I+ PE M +P 
Sbjct: 421 ENAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465


>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
          Length = 464

 Score =  561 bits (1448), Expect = e-160
 Identities = 251/457 (54%), Positives = 323/457 (70%)

Query: 4   TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELG 63
           +R E DS G ++V ED YWGAQ QRSL NF IG+E+ PL ++ AL +IK+AAARVN   G
Sbjct: 2   SRTETDSLGPIEVPEDAYWGAQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNG 61

Query: 64  KLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMG 123
            L   I   I +A++EV++G+ DD FPLVVWQTGSGTQSNMNVNEVI+ RA E+ G   G
Sbjct: 62  DLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRG 121

Query: 124 SKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIK 183
            KSPVHPNDHVN  QSSND +PTA+HIA A+ +  +LLP +  L   L ++ +    ++K
Sbjct: 122 GKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVK 181

Query: 184 IGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA 243
            GRTH  DATP+T GQE S +  Q+  + + I   L  + ELAQGGTAVGTGLN P GFA
Sbjct: 182 TGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFA 241

Query: 244 EKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPR 303
           E +A  +  ++GLPF+TAPNKF ALA H+ +    GA+ T A AL KIAND+R LGSGPR
Sbjct: 242 EAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPR 301

Query: 304 SGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKP 363
           +GL E+ LP NEPGSSIMPGKVNPTQCEA++ +   + GN A I FA SQGH +LNV+KP
Sbjct: 302 AGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKP 361

Query: 364 MIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASM 423
           +I +N+LQSI+LL+D   +F  +C+ G++   E +   L R LMLVTAL   IGYD A+ 
Sbjct: 362 VIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAE 421

Query: 424 IAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460
           IAKKA+   TTL+E A+A G ++  ++D  V+PE M+
Sbjct: 422 IAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENML 458


>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
          Length = 473

 Score =  533 bits (1375), Expect = e-152
 Identities = 210/461 (45%), Positives = 292/461 (63%), Gaps = 1/461 (0%)

Query: 2   TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61
            N R E D  G  +V  + Y+G Q  R++ENF I   K    +IRA   +K+AAA  N +
Sbjct: 3   KNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITGYKIHPELIRAFAQVKKAAALANAD 62

Query: 62  LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
           LG L  +I EAIV+A +E++ GKL D F +   Q G+GT +NMN NEVI+NRA+E+LGG 
Sbjct: 63  LGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGE 122

Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
            G    V PNDHVN+ QS+ND +PTAI IA    +   LL  +  L     +K ++F  +
Sbjct: 123 KGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EGLLAAMGALQDVFEEKAAEFDHV 181

Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
           IK+GRT  QDA P+TLGQEFS YA  +K   KRI+   + LYE+  GGTAVGTGLN    
Sbjct: 182 IKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNADPE 241

Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
           + E+V +++  ITGLP + A +  +A    DA     GA+   A  L KIAND+R L SG
Sbjct: 242 YIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSG 301

Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361
           PR+GLGE+ LP  +PGSSIMPGKVNP   E + Q+   + GN   IT A   G  ELNV 
Sbjct: 302 PRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVM 361

Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421
           +P+IA+N+L+SI +L+++  +FT NC++GI+A +E  +  + +S+ + TAL   IGY+ A
Sbjct: 362 EPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAA 421

Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
           + IAK+A     +++E A+ +GL+S  E DLI+ P +M +P
Sbjct: 422 ARIAKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHP 462


>gnl|CDD|162062 TIGR00839, aspA, aspartate ammonia-lyase.  Fumarate hydratase
           scores as high as 570 bits against this model.
          Length = 468

 Score =  430 bits (1108), Expect = e-121
 Identities = 182/461 (39%), Positives = 268/461 (58%), Gaps = 4/461 (0%)

Query: 5   RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARVNIEL 62
           R E+D  G  +V  D Y+G    R+ ENF I   K       +R + ++K+AAA  N EL
Sbjct: 1   RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKEL 60

Query: 63  GKLDPKIGEAIVKASEEVIN-GKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
           G +   I  AIV A +E++N GK  D FP+ V+Q G+GT  NMN NEVI+N A+E++G  
Sbjct: 61  GTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQ 120

Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
            G    ++PNDHVN  QS+ND YPT   IA    ++ +L+  +  L     +K  +F DI
Sbjct: 121 KGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLI-KLVDAINQLRDGFEQKAKEFADI 179

Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
           +K+GRT  QDA P+TLGQEF  ++  ++  +K I+ T + L E+  G TA+GTGLNTP  
Sbjct: 180 LKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPE 239

Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
           ++  V + + ++TGLP + A N  EA +   A    HGA+   A  + KI ND+R L SG
Sbjct: 240 YSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 299

Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361
           PR+GL E+ LPE + GSSIMP KVNP   E + QVC  + GN   +T A   G  +LNV 
Sbjct: 300 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVM 359

Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421
           +P+I   + +SI +L+++  + T  C+ GI A KE  +  +  S+ +VT L   IG+ N 
Sbjct: 360 EPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNG 419

Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
            ++ K       +++E  +  GL++  E D I   E +++P
Sbjct: 420 DIVGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLMHP 460


>gnl|CDD|184723 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
          Length = 479

 Score =  390 bits (1003), Expect = e-109
 Identities = 186/460 (40%), Positives = 283/460 (61%), Gaps = 1/460 (0%)

Query: 3   NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIEL 62
             R E+D  G  +V    Y+G Q  R++ENF I   K    +I+A  I+K+AAA  N ++
Sbjct: 10  GVRIEKDFLGEKEVPNYAYYGVQTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDV 69

Query: 63  GKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVM 122
           G+L+   G AI +A++E+++GK  DHF +   Q G+GT  NMN NEVI+NRA+E+LG   
Sbjct: 70  GRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEK 129

Query: 123 GSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDII 182
           G    + PN HVN+ QS+ND +PTAIHIA     +  LL T+  +H     K   F  +I
Sbjct: 130 GDYHYISPNSHVNMAQSTNDAFPTAIHIATLN-ALEGLLQTMGYMHDVFELKAEQFDHVI 188

Query: 183 KIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGF 242
           K+GRTH QDA P+ LGQEF  Y+  ++  +KRI+ +   LYE+  G TAVGTGLN    +
Sbjct: 189 KMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEY 248

Query: 243 AEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGP 302
            E V +++  I+ LP + A +  +A    DA      A+      + KIAND+R + SGP
Sbjct: 249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGP 308

Query: 303 RSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK 362
           R GL E+MLP  +PGSSIMPGKVNP   E I Q+   + GN   I  A+  G  ELNV +
Sbjct: 309 RVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVME 368

Query: 363 PMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNAS 422
           P++ +N+LQSI ++++   +FT NC++GI+A ++ ++  + +S+ ++TA+   IGY+ A+
Sbjct: 369 PVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAA 428

Query: 423 MIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
            +AK+A     +++E  + +G++S  + +LI+ P +M +P
Sbjct: 429 RVAKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468


>gnl|CDD|162114 TIGR00928, purB, adenylosuccinate lyase.  This family consists of
           adenylosuccinate lyase, the enzyme that catalyzes step 8
           in the purine biosynthesis pathway for de novo synthesis
           of IMP and also the final reaction in the two-step
           sequence from IMP to AMP.
          Length = 435

 Score = 89.0 bits (221), Expect = 2e-18
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 14/280 (5%)

Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192
            ++   +SND   TA+ +   + +   +LP L+ L   L     +++D + +GRTH Q A
Sbjct: 90  FIHFGATSNDIVDTALALLLRDAL-EIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHA 148

Query: 193 TPLTLGQEFSGYATQVKNSIKRI-EMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIR 251
            P TLG++F+ +A ++K  ++R+ +           G  AVGT         E V + + 
Sbjct: 149 EPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISG--AVGTHAAAYPLVEE-VEERVT 205

Query: 252 DITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELML 311
           +  GL  +    + E    H  +      + T+   L K A DIR L    R+   E+  
Sbjct: 206 EFLGLKPVPISTQIEPRDRHAELLDALALLATT---LEKFAVDIRLL---QRTEHFEVEE 259

Query: 312 P--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNV 369
           P  + + GSS MP K NP   E +  +   I    +         H E ++    +   +
Sbjct: 260 PFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALENVPLWH-ERDLTDSSVERII 318

Query: 370 LQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV 409
           L    +L+D +   T+  ++ +    ENI  +L  +L L+
Sbjct: 319 LPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLI 358


>gnl|CDD|150996 pfam10415, FumaraseC_C, Fumarase C C-terminus.  Fumarase C
           catalyses the stereo-specific interconversion of
           fumarate to L-malate as part of the Kreb's cycle. The
           full-length protein forms a tetramer with visible
           globular shape. FumaraseC_C is the C-terminal 65
           residues referred to as domain 3. The core of the
           molecule consists of a bundle of 20 alpha-helices from
           the five-helix bundle of domain 2. The projections from
           the core of the tetramer are generated from domains 1
           and 3 of each subunit. FumaraseC_C does not appear to be
           part of either the active site or the activation site
           but is helical in structure forming a little bundle.
          Length = 55

 Score = 84.8 bits (211), Expect = 4e-17
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query: 408 LVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
           LVTAL   IGYD A+ IAK+A     TL+E A+  GL++  E D I+ PE M  P
Sbjct: 1   LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55


>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase.  This model describes
           argininosuccinate lyase, but may include examples of
           avian delta crystallins, in which argininosuccinate
           lyase activity may or may not be present and the
           biological role is to provide the optically clear
           cellular protein of the eye lens.
          Length = 455

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 90/395 (22%), Positives = 140/395 (35%), Gaps = 69/395 (17%)

Query: 68  KIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSP 127
           KI E + +  EE   G                     +++  I    I+ +G  +G K  
Sbjct: 55  KIIEGLNELKEEGREGPFILDPDD------------EDIHMAIERELIDRVGEDLGGK-- 100

Query: 128 VHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT 187
           +H        +S ND   T + +   + ++  L   L +L  AL +      + +  G T
Sbjct: 101 LHTG------RSRNDQVATDLRLYLRDHVLE-LAEALLDLQDALIELAEKHVETLMPGYT 153

Query: 188 HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVA 247
           H Q A P+TL      YA  +    +R+    D L  +    + +G+G     GF     
Sbjct: 154 HLQRAQPITLAHHLLAYAEMLLRDYERL---QDALKRVNV--SPLGSGALAGTGFPIDRE 208

Query: 248 QNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLG 307
                + G   +T  N  +A++  D I             L + A D+    +G     G
Sbjct: 209 YLAELL-GFDAVTE-NSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FG 263

Query: 308 ELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK--PM 364
            + LP E   GSSIMP K NP   E I      + GN   +          L   K  P+
Sbjct: 264 FVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGM----------LMTLKALPL 313

Query: 365 IAYNV-LQSI-QLLSDSIDSFTINCIE-------GIQARKENIQLSLNRSLMLVTALTSK 415
            AYN  LQ   + L D++ +     +E        I   KE ++ + +      T L   
Sbjct: 314 -AYNRDLQEDKEPLFDALKT-VELSLEMATGMLDTITVNKERMEEAASAGFSNATEL--- 368

Query: 416 IGYDNASMIAKK------AHHNSTTLKEEAIASGL 444
                A  + +K      AHH    L   AI  G 
Sbjct: 369 -----ADYLVRKGVPFREAHHIVGELVATAIERGK 398


>gnl|CDD|180551 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
          Length = 451

 Score = 71.5 bits (175), Expect = 4e-13
 Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 25/208 (12%)

Query: 141 NDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQE 200
           NDT  TA+ I     I+      ++NL   L K I +++D   +GRTH Q A+P+T G +
Sbjct: 106 NDT-ATALQIHDFVSIIKD---DIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLK 161

Query: 201 FSGYATQVKNSIKR-IEMTLDGLYELAQGGTAVGTGLNTPVG-------FAEKVAQNIRD 252
           F+ Y  ++   + R  EM          G  A    +  PVG        A  +   + +
Sbjct: 162 FAVYLDEMSRHLDRLTEM----------GDRAFAGKVLGPVGTGAALGKDALDIQNRVME 211

Query: 253 ITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP 312
           I G+       +   +   D        IN  +  L KIA +IR L       + E    
Sbjct: 212 ILGIYSEIGSTQ---IVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDE 268

Query: 313 ENEPGSSIMPGKVNPTQCEAITQVCAHI 340
           E++ GSS MP KVNP   E +  +   I
Sbjct: 269 ESQVGSSSMPSKVNPINSENVVSLSRFI 296


>gnl|CDD|181463 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
          Length = 449

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 91/357 (25%), Positives = 150/357 (42%), Gaps = 65/357 (18%)

Query: 140 SNDTYPTA--IHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTL 197
           SND   TA  + +  +  I+   L  LR +   L KK  + ++ + IGRTH Q A P T 
Sbjct: 103 SNDIIDTATALQLKDSLEILEEKLKKLRGV---LLKKAEEHKNTVCIGRTHGQHAVPTTY 159

Query: 198 GQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEK---VAQNIRDIT 254
           G  F+ +A++++  ++R+E     +  + Q   AVG    T   F EK   + + + +I 
Sbjct: 160 GMRFAIWASEIQRHLERLEQLKPRV-CVGQMTGAVG----TQAAFGEKGIEIQKRVMEIL 214

Query: 255 GLPFITAPNK----------FEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
           GL  +   N+             LA            N  AT L KI  +IR L    R+
Sbjct: 215 GLKPVLISNQVIQRDRHAEFMMFLA------------NI-ATTLDKIGLEIRNL---QRT 258

Query: 305 GLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVC--AHIFGNHAAITFANSQGHFELNV 360
            +GE+     + + GSS MP K NP   E   Q+C  A +  ++      N+    E ++
Sbjct: 259 EIGEVEEEFGKKQVGSSTMPHKRNPITSE---QICGLARVVRSNVEPALLNNPLWDERDL 315

Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR--------SLMLVTAL 412
                   +     +L+D I    I  +EG++   ENI+ +L          ++M+   L
Sbjct: 316 TNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMI--EL 373

Query: 413 TSK-IGYDNASMI----AKKAHHNSTTLKEEAI----ASGLISATEYDLIVKPEKMI 460
             + +G   A  +    A KAH     LKE  +        ++  E + ++ PE  I
Sbjct: 374 AKRGMGRQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYI 430


>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
           lyase/N-acetylglutamate synthase; Provisional.
          Length = 614

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 41/320 (12%)

Query: 138 QSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTL 197
           +S ND   T + + C ++   +LL  L  L   +       Q  +  G TH Q A P+T 
Sbjct: 107 RSRNDQVATDLKLWCRQQ-GQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTF 165

Query: 198 GQEFSGYATQVKNSIKRIEMTLDGLYELAQG-GTAVGTGLNTPVGFAEKVAQNIRDITGL 256
                 Y    +    R+E  L  L     G G   GT    P+   E +A N      L
Sbjct: 166 AHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAY--PID-REALAHN------L 216

Query: 257 PFITAP-NKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENE 315
            F  A  N  ++++  D +       + S   L ++A D+ F  SG  SG  EL      
Sbjct: 217 GFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSG-ESGFIELA-DTVT 274

Query: 316 PGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYN--VLQSI 373
            GSS+MP K NP   E I      ++G  A +          + V    +AYN  + +  
Sbjct: 275 SGSSLMPQKKNPDALELIRGKTGRVYGALAGMM---------MTVKALPLAYNKDMQEDK 325

Query: 374 QLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMIA-------- 425
           + L D++D++  +C+E      + I+++  R+L       +K GY NA+ +A        
Sbjct: 326 EGLFDALDTWN-DCMEMAALCFDGIKVNGERTLE-----AAKQGYANATELADYLVAKGI 379

Query: 426 --KKAHHNSTTLKEEAIASG 443
             ++AHH        AIA G
Sbjct: 380 PFREAHHIVGVAVVGAIAKG 399


>gnl|CDD|162853 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
           cycloisomerase.  Members of this family are
           3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
           the catalyzes the second step in the protocatechuate
           degradation to beta-ketoadipate and then to succinyl-CoA
           and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
           and vanillate all can be converted in one step to
           protocatechuate. All members of the seed alignment for
           this model were chosen from within protocatechuate
           degradation operons of at least three genes of the
           pathway, from genomes with the complete pathway through
           beta-ketoadipate.
          Length = 338

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 15/203 (7%)

Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192
           +V+   +S D   T++ +      +  LL  L  L  AL    +  +D    GRT  Q A
Sbjct: 92  YVHRGATSQDVIDTSL-MLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQA 150

Query: 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT-PVGFAEKVAQNIR 251
            P T G + +G+   V  +  R+         L  GG A GT       G A  VA  + 
Sbjct: 151 VPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTRGGA--VAAALA 207

Query: 252 DITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELML 311
              GLP    P   +     D IA    A+   A AL KIA DI  L    ++ +GE+  
Sbjct: 208 ARLGLPLPALPWHTQ----RDRIAEFGSALALVAGALGKIAGDIALLS---QTEVGEVF- 259

Query: 312 PENEP-GSSIMPGKVNPTQCEAI 333
            E    GSS MP K NP     +
Sbjct: 260 -EAGGGGSSAMPHKRNPVGAALL 281


>gnl|CDD|181757 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
          Length = 456

 Score = 55.1 bits (134), Expect = 4e-08
 Identities = 63/249 (25%), Positives = 92/249 (36%), Gaps = 87/249 (34%)

Query: 148 IHIAC-AERI---VHRL----------LPTLRNLHVALTKKISDFQDIIKIGRTHTQDAT 193
           IH AC +E I    H L          LP LR L  AL +   ++ D+  + RTH Q AT
Sbjct: 117 IHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHGQPAT 176

Query: 194 PLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA---------- 243
           P TLG+E +  A +++  +K++E     +  L +   AVG        +           
Sbjct: 177 PTTLGKEMANVAYRLERQLKQLE----AVEILGKINGAVGN-------YNAHLAAYPEVD 225

Query: 244 -EKVAQNIRDITGL-----PFITA--PNKFEALACHDAIAFCHGAINTSATALFKIANDI 295
               ++    +  L     P+ T   P        HD IA    A+    T L  +  D+
Sbjct: 226 WHAFSREF--VESLGLTWNPYTTQIEP--------HDYIAELFDAVARFNTILIDLDRDV 275

Query: 296 ------RFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITF 349
                  +     ++G         E GSS MP KVNP                   I F
Sbjct: 276 WGYISLGYFKQKTKAG---------EIGSSTMPHKVNP-------------------IDF 307

Query: 350 ANSQGHFEL 358
            NS+G+  L
Sbjct: 308 ENSEGNLGL 316


>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
          Length = 455

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 85/331 (25%), Positives = 130/331 (39%), Gaps = 65/331 (19%)

Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198
           S ND   T + + C +++   LL  LR L  AL +   + QD +  G TH Q A P+T  
Sbjct: 108 SRNDQVATDLKLWCKDQVAE-LLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFA 166

Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYE--LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGL 256
                Y   +     R++  L  L    L  G  A GT         E++A        L
Sbjct: 167 HWCLAYVEMLARDESRLQDALKRLDVSPLGSGALA-GTAYEID---REQLAGW------L 216

Query: 257 PFITAP-NKFEALACHD-AIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPEN 314
            F +A  N  ++++  D  +     A + S   L + A D+ F  SG  +G  EL     
Sbjct: 217 GFASATRNSLDSVSDRDHVLELLSDA-SISMVHLSRFAEDLIFFNSG-EAGFVELS-DRV 273

Query: 315 EPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM-IAYNVLQSI 373
             GSS+MP K NP   E I   C  + G    +          L   K + +AYN  + +
Sbjct: 274 TSGSSLMPQKKNPDALELIRGKCGRVQGALTGM----------LMTLKGLPLAYN--KDM 321

Query: 374 QL----LSDSIDSFTINCI-------EGIQARKENIQLSLNRSLMLVTALTSKIGYDNAS 422
           Q     L D++D++   C+       +GIQ ++                  ++ GY NA+
Sbjct: 322 QEDKEGLFDALDTWLD-CLHMAALVLDGIQVKRPR------------CQEAAQQGYANAT 368

Query: 423 MIA----------KKAHHNSTTLKEEAIASG 443
            +A          ++AHH       EAI  G
Sbjct: 369 ELADYLVAKGVPFREAHHIVGEAVVEAIRQG 399


>gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
          Length = 887

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 34/239 (14%)

Query: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229
           AL  K S   D      +  Q A P +LG         +      +    + +     G 
Sbjct: 545 ALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGA 604

Query: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280
            A G G   P+         GF +                APN  +A+A  D +     A
Sbjct: 605 GA-GGGTTFPIDPEFVARLLGFEQ---------------PAPNSLDAVASRDGVLHFLSA 648

Query: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAH 339
           +   +T L ++A D++ L +     L  + LP+    GSS++P K NP   E +      
Sbjct: 649 MAAISTVLSRLAQDLQ-LWTTREFAL--VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGV 705

Query: 340 IFGNHAAITFANSQGHF--ELNVYKPMIAYNVLQSIQLLSDSID--SFTINCIEGIQAR 394
           + G  A+ + A  +  F        PM    + Q+   + D+       I+ +E  QAR
Sbjct: 706 VAGALASASAALGKTPFSNSFEAGSPMNG-PIAQACAAIEDAAAVLVLLIDGLEADQAR 763


>gnl|CDD|178252 PLN02646, PLN02646, argininosuccinate lyase.
          Length = 474

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 82/377 (21%), Positives = 142/377 (37%), Gaps = 62/377 (16%)

Query: 53  QAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN 112
           +A A +  + G +  +  ++I+   +E+        F    W+         +V+     
Sbjct: 53  KAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKF---EWRPD-----REDVHMNNEA 104

Query: 113 RAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALT 172
           R  E++G              ++  +S ND   T   + C + I   +   ++ L VAL 
Sbjct: 105 RLTELIGEPAKK---------LHTARSRNDQVATDTRLWCRDAID-VIRKRIKTLQVALV 154

Query: 173 KKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAV 232
           +      D++  G TH Q A P+ L      +  Q++    R+      +     G  A+
Sbjct: 155 ELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCAL 214

Query: 233 -GTGLNTPVGFAEKVAQNIRDITG--LPFITAP--NKFEALACHDAIAFCHGAINTSATA 287
            GTGL  P+          R +T   L F TAP  N  +A++  D +     A + +A  
Sbjct: 215 AGTGL--PID---------RFMTAKDLGF-TAPMRNSIDAVSDRDFVLEFLFANSITAIH 262

Query: 288 LFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAHIFGNHAA 346
           L ++  +     S      G +   +    GSSIMP K NP   E +    A + G+   
Sbjct: 263 LSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGD--L 317

Query: 347 ITFANSQGHFELNVYK--PMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARK 395
           +T         L + K  P  AYN         +  S+  +SD ++       + I    
Sbjct: 318 VTV--------LALCKGLPT-AYNRDLQEDKEPLFDSVDTVSDMLE-VATEFAQNITFNP 367

Query: 396 ENIQLSLNRSLMLVTAL 412
           E I+ SL   ++  T L
Sbjct: 368 ERIKKSLPAGMLDATTL 384


>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
          Length = 458

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 41/209 (19%)

Query: 154 ERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIK 213
           E +   +LPT+  +  A++    +F  +  + RTH Q A+P TLG+E + +A +    + 
Sbjct: 140 EGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYR----LS 195

Query: 214 RIEMTLDGLYELAQGGTAVGTGLNTPVGFAE----KVAQNIRDITGLPFITAPNKFEALA 269
           R    L  +    +   AVG        + E     VA+      GL F     + E   
Sbjct: 196 RQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVTQIEP-- 253

Query: 270 CHDAIAFCHGAINTSATALFKIANDI-RFLGSG---PRSGLGELMLPENEPGSSIMPGKV 325
            HD +A    A++     L     DI  ++  G     +  GE+       GSS MP KV
Sbjct: 254 -HDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEV-------GSSTMPHKV 305

Query: 326 NPTQCEAITQVCAHIFGNHAAITFANSQG 354
           NP                   I F NS+G
Sbjct: 306 NP-------------------IDFENSEG 315


>gnl|CDD|181586 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
          Length = 216

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 272 DAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCE 331
           D        I TS     K AN+IR L         E    + + GSS MP K NP   E
Sbjct: 17  DIAEIVLALIATSLE---KFANEIRLL-QRSEIREVEEPFAKGQKGSSAMPHKRNPIGSE 72

Query: 332 AITQVCAHIFGNHAAITFANSQGHFELNV-YKPMIAYNVLQSIQLLSDSIDSFTINCIEG 390
            IT +   +              H E ++ +       +  +  L  D I +  +N +E 
Sbjct: 73  RITGLARVLRSYLVTALENVPLWH-ERDLSHSSAERIALPDAF-LALDYILNRFVNILEN 130

Query: 391 IQARKENIQLSLNRSL 406
           +    ENI+ +L+++L
Sbjct: 131 LVVFPENIERNLDKTL 146


>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
           Provisional.
          Length = 452

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 61/211 (28%), Positives = 82/211 (38%), Gaps = 33/211 (15%)

Query: 147 AIHIACAERIVH----------------------RLLPTLRNLHVALTKKISDFQDIIKI 184
           A   A A R VH                       L P L  L  AL    +  +    +
Sbjct: 92  AARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMV 151

Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244
           GRT  Q A P+TLG +F+G+   +    +R+         L Q G A GT L +    A 
Sbjct: 152 GRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVL-QFGGAAGT-LASLGEQAL 209

Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
            VAQ +     L     P   +     D IA    A+   A  L KIA D+  L    ++
Sbjct: 210 PVAQALAAELQLALPALPWHTQ----RDRIAEFASALGLLAGTLGKIARDVSLL---MQT 262

Query: 305 GLGELMLP--ENEPGSSIMPGKVNPTQCEAI 333
            +GE+  P    + GSS MP K NP  C A+
Sbjct: 263 EVGEVFEPAAAGKGGSSTMPHKRNPVGCAAV 293


>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
          Length = 442

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198
           +S+D   TA+ +   + +   ++  ++NL  A+ K+  + +D + +GR+H     P+T G
Sbjct: 93  TSSDCIDTAVALQMRDSL-KLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFG 151

Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF 258
              + +  ++K  +K +E T++ +  + +   A+G   + P+   E V + +    GL  
Sbjct: 152 LVLAIWYDEIKRHLKALEHTME-VISVGKISGAMGNFAHAPLELEELVCEEL----GLKP 206

Query: 259 ITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGL--GELMLPENEP 316
               N+   +   D  A    A+   A++  KIA  IR L    R+ +   E    + + 
Sbjct: 207 APVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHL---QRTEVYEAEEYFSKGQK 260

Query: 317 GSSIMPGKVNPTQCEAITQVCAHI 340
           GSS MP K NP   E IT +C  I
Sbjct: 261 GSSAMPHKRNPVLSENITGLCRVI 284


>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
          Length = 459

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 72/303 (23%), Positives = 108/303 (35%), Gaps = 69/303 (22%)

Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198
           S ND   T + +   + I   +   L  L  AL     +  D I  G TH Q A P+T G
Sbjct: 110 SRNDQVATDLRLYLRDEID-EIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFG 168

Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQG---GTAVGTGLNTPV---------GFAEKV 246
                YA      + R    L    +       G+A   G   P+         GF + V
Sbjct: 169 HHLLAYA----EMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRERTAELLGF-DGV 223

Query: 247 AQNIRDITGLPFITAPNKFEALACHD-AIAFCHGAINTSATALFKIANDIRFLGSGPRSG 305
            +N  D              A++  D A+ F   A +     L ++A ++  L S    G
Sbjct: 224 TENSLD--------------AVSDRDFALEFLS-AASLLMVHLSRLAEEL-ILWSSQEFG 267

Query: 306 LGELMLPENEP-----GSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
             EL      P     GSSIMP K NP   E I      ++GN   +          L V
Sbjct: 268 FVEL------PDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGL----------LTV 311

Query: 361 YK--PMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV 409
            K  P+ AYN         +  ++  L  S+++     +E +   KE ++ +  +     
Sbjct: 312 MKGLPL-AYNRDLQEDKEPLFDAVDTLKLSLEAMAG-MLETLTVNKERMREAAGKGFSTA 369

Query: 410 TAL 412
           T L
Sbjct: 370 TDL 372


>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
          Length = 435

 Score = 36.1 bits (84), Expect = 0.022
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
           LL  L  +  AL K+  + +D   IGR+H   A P T G + + +  +   + +R+    
Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175

Query: 220 DGLYELAQGGT--AVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALAC------- 270
           +   E+A      AVGT  N      E VA+ +    GL       K E ++        
Sbjct: 176 E---EIATCAISGAVGTFANIDPRVEEHVAKKL----GL-------KPEPVSTQVIPRDR 221

Query: 271 HDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPT 328
           H A+ F    +   A+++ ++A +IR L    R+ + E        + GSS MP K NP 
Sbjct: 222 H-AMFFA--TLGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPV 275

Query: 329 QCEAIT 334
             E +T
Sbjct: 276 LTENLT 281


>gnl|CDD|102352 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
          Length = 434

 Score = 35.3 bits (81), Expect = 0.039
 Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 37/232 (15%)

Query: 173 KKISDFQDIIKI-----------GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDG 221
           +      +IIK+           G TH + A P+T     + Y   +K+ +      LD 
Sbjct: 124 EIEKILYEIIKVIPGFNLKGRLPGYTHFRQAMPMT----VNTYINYIKSILYHHINNLDS 179

Query: 222 -LYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280
            L +L +     G+G  +P          +  +     I  P  + +      I      
Sbjct: 180 FLMDLREMPYGYGSGYGSPSSVKFNQMSELLGME--KNIKNP-VYSSSLYIKTIENISYL 236

Query: 281 INTSATALFKIAND-IRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAH 339
           I++ A  L +I  D I +  +G  +     +  E   GSS+MP K NP   E    + A 
Sbjct: 237 ISSLAVDLSRICQDIIIYYENGIIT-----IPDEFTTGSSLMPNKRNPDYLELFQGIAA- 290

Query: 340 IFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGI 391
                 +I+  +     ELN       Y+  +  Q++ DS  SF IN  E I
Sbjct: 291 -----ESISVLSFIAQSELN---KTTGYH--RDFQIVKDSTISF-INNFERI 331


>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
          Length = 431

 Score = 33.1 bits (76), Expect = 0.14
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
           LL  L +L  A+  +  + ++ + IGR+H   A P+T G + +G+  +   + +R+   L
Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLV-RL 171

Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHG 279
                + Q   AVGT  NT      +V        GL   TA  +   +   D  A    
Sbjct: 172 REDIAVGQISGAVGTYANTD----PRVEAITCQKLGLKPDTASTQ---VISRDRHAEYVQ 224

Query: 280 AINTSATALFKIANDIRFLGSGPRSGLGEL--MLPENEPGSSIMPGKVNPTQCEAIT 334
            +     +L + A +IR L    R+ + E+     + + GSS MP K NP + E ++
Sbjct: 225 TLALVGASLERFATEIRNL---QRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLS 278


>gnl|CDD|163089 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
           binding subunit.  Members of the protein family are the
           molybdopterin-containing large subunit (or, in,
           eukaryotes, the molybdopterin-binding domain) of
           xanthine dehydrogenase, and enzyme that reduces the
           purine pool by catabolizing xanthine to urate. This
           model is based primarily on bacterial sequences; it does
           not manage to include all eukaryotic xanthine
           dehydrogenases and thereby discriminate them from the
           closely related enzyme aldehyde dehydrogenase.
          Length = 758

 Score = 32.3 bits (74), Expect = 0.28
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 23/72 (31%)

Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF----ITAPNKFEALACHDAIA 275
           DG   L  GGT +G GLNT      KVAQ + +   +      ITA +        D + 
Sbjct: 457 DGSIHLNHGGTEMGQGLNT------KVAQVVAEEFQVDIDRVKITATDT-------DKVP 503

Query: 276 FCHGAINTSATA 287
                 NTSATA
Sbjct: 504 ------NTSATA 509


>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
          Length = 502

 Score = 31.9 bits (72), Expect = 0.38
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 15/207 (7%)

Query: 131 NDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQ 190
           N H+   +S ND   T   ++   R V RL+     L  ++ +  +D ++ I    THTQ
Sbjct: 109 NMHIG--RSRNDMGVTMYRMSL-RRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQ 165

Query: 191 DATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNI 250
            A P T G         ++  ++R++ T   L +   G  A+ T  + P+   E+VA   
Sbjct: 166 PAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALST-TSFPIK-RERVAD-- 221

Query: 251 RDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELM 310
             + G   +   N ++A+A  D +      +    T   +  +D   L +    G+  + 
Sbjct: 222 --LLGFTNVIE-NSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGI-TVA 277

Query: 311 LPENEPGSSIMPGKVNPTQCE---AIT 334
            P  +  SSIMP K NP   E   AIT
Sbjct: 278 RPYVQI-SSIMPQKRNPVSIEHARAIT 303


>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase.  Phytoene is converted to
           lycopene by desaturation at four (two symmetrical pairs
           of) sites. This is achieved by two enzymes (crtP and
           crtQ) in cyanobacteria (Gloeobacter being an exception)
           and plants, but by a single enzyme in most other
           bacteria and in fungi. This single enzyme is called the
           bacterial-type phytoene desaturase, or CrtI. Most
           members of this family, part of the larger Pfam family
           pfam01593, which also contains amino oxidases, are CrtI
           itself; it is likely that all members act on either
           phytoene or on related compounds such as
           dehydrosqualene, for carotenoid biosynthesis.
          Length = 502

 Score = 29.6 bits (67), Expect = 1.9
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 219 LDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNK 264
           +D LY L   GT  G G+   +G A+  A+ +           P  
Sbjct: 458 IDNLY-LVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGPEPDPPA 502


>gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit.  Subunit of G
           proteins that contains the guanine nucleotide binding
           site.
          Length = 342

 Score = 28.7 bits (65), Expect = 3.4
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 353 QGHF---ELNVYKPMIAYNVLQSIQLLSDSIDSFTIN 386
              F   E   Y+P+I  N+L+S++ L D+++   I 
Sbjct: 46  GDGFSQEERREYRPLIYSNILESMKALVDAMEELNIP 82


>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
           Provisional.
          Length = 347

 Score = 28.3 bits (63), Expect = 5.0
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 155 RIVHRLLPTLRNLHVALTKKI------SDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208
           R+    +P +++    L K        SD   I K G  H     P+TLG EFSGY   V
Sbjct: 13  RVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYY---PITLGHEFSGYVEAV 68


>gnl|CDD|179731 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed.
          Length = 149

 Score = 27.5 bits (62), Expect = 8.2
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 44 IIRALGIIK---QAAARVNIELGKLDP--KIG---EAIVKASEEVINGKLDDHFP 90
          +  AL  IK   +  AR       LDP  K+G   +  ++  EE +    ++  P
Sbjct: 23 VEYALTGIKGIGRRTARAIARKLGLDPNAKLGYLSDEEIEKIEEALEDPAEEGIP 77


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,290,020
Number of extensions: 467529
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 46
Length of query: 463
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,898,497
Effective search space: 1426849902
Effective search space used: 1426849902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)