RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus
Liberibacter asiaticus str. psy62]
(463 letters)
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, cytoplasm, lyase, tricarboxylic acid cycle;
2.40A {Rickettsia prowazekii}
Length = 482
Score = 537 bits (1384), Expect = e-153
Identities = 270/460 (58%), Positives = 334/460 (72%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60
M N R E DSFG ++++E YWGAQ QRSL NFKI ++K P ++IRAL I+K+ AA+VN
Sbjct: 22 MKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNY 81
Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
E G L+ KI +I KA + ++ G+ +D+FPLVVWQTGSGTQ+NMN+NEVI++ A E L G
Sbjct: 82 EFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTG 141
Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
G K PVHPNDHVN QSSND++PTA+HIA +L+P L NL L K D+
Sbjct: 142 KKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDK 201
Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
IIKIGRTH QDATPLTL QEFSGY TQ++ +++RIE L +Y LAQGGTAVGTG+N+ +
Sbjct: 202 IIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKI 261
Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
GF K AQ + + T PF TAPNKFE+LA HDA+ G +NT A +L KIANDIR LGS
Sbjct: 262 GFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGS 321
Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
GPR GLGEL LPENEPGSSIMPGKVNPTQ EA+T VC + GNH +T A S GH ELNV
Sbjct: 322 GPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNV 381
Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
+KP+I YN+LQSI+LLSDS++SF +C++G++ I ++SLMLVT L IGYDN
Sbjct: 382 FKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDN 441
Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460
A+ IAK+AH TLKE A +S E+D IV PEKMI
Sbjct: 442 AAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 526 bits (1355), Expect = e-150
Identities = 186/461 (40%), Positives = 267/461 (57%), Gaps = 4/461 (0%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARV 58
+ TR EQDS G + D Y+G Q R++ENF + + ++RAL ++K+AAA
Sbjct: 20 GSMTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATA 79
Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118
N +L +L AIV A +++I+G L + F + V+Q G+GT SNMN NEVI+NRA+E L
Sbjct: 80 NYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHL 139
Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178
G G +HPND VN+ QS+ND YPTA+ +A +++ L L A K +F
Sbjct: 140 GRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALL-LSQNQVQTALHRLIAAFEAKGREF 198
Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238
+IKIGRT QDA P+TLGQEF +A ++ R+E E+ GGTA+GT +N
Sbjct: 199 ATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINA 258
Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
+AE+ + I+G+ N EA A G + A L KIAND+R L
Sbjct: 259 SHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLL 318
Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
SGPRSGLGE+ LP +PGSSIMPGKVNP E++ QVC + GN +T A G +L
Sbjct: 319 SSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQL 378
Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
N ++P+I YN+L S++LL ++ + C++GI+A E + S+ L TAL +GY
Sbjct: 379 NAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGY 438
Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM 459
A+ IAK+A + T+ E AI+ GL A+ +++ P +M
Sbjct: 439 ARAAEIAKQALASGQTVMEVAISKGL-DASALTIMLDPLRM 478
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, acetylation, alternative initiation,
anti-oncogene, cell cycle, cytoplasm; 1.95A {Homo
sapiens}
Length = 490
Score = 504 bits (1299), Expect = e-143
Identities = 300/464 (64%), Positives = 354/464 (76%), Gaps = 3/464 (0%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARV 58
+ R E D+FG +KV D+Y+GAQ RS NFKIG E+ P +I+A GI+K+AAA V
Sbjct: 27 QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEV 86
Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118
N + G LDPKI AI+KA++EV GKL+DHFPLVVWQTGSGTQ+NMNVNEVISNRAIE+L
Sbjct: 87 NQDYG-LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEML 145
Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178
GG +GSK PVHPNDHVN QSSNDT+PTA+HIA A + LLP L+ LH AL K +F
Sbjct: 146 GGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEF 205
Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238
IIKIGRTHTQDA PLTLGQEFSGY QVK ++ RI+ + +YELA GGTAVGTGLNT
Sbjct: 206 AQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNT 265
Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
+GFAEKVA + +TGLPF+TAPNKFEALA HDA+ GA+NT+A +L KIANDIRFL
Sbjct: 266 RIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFL 325
Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
GSGPRSGLGEL+LPENEPGSSIMPGKVNPTQCEA+T V A + GNH A+T S GHFEL
Sbjct: 326 GSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFEL 385
Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
NV+KPM+ NVL S +LL D+ SFT NC+ GIQA E I +N SLMLVTAL IGY
Sbjct: 386 NVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGY 445
Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
D A+ IAK AH N +TLKE AI G ++A ++D VKP+ M+ P
Sbjct: 446 DKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli B} SCOP: a.127.1.1
Length = 478
Score = 503 bits (1295), Expect = e-143
Identities = 179/466 (38%), Positives = 270/466 (57%), Gaps = 5/466 (1%)
Query: 1 MT-NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLV--IIRALGIIKQAAAR 57
M+ N R E+D GT +V D Y+G R++ENF I K + +R + ++K+AAA
Sbjct: 1 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM 60
Query: 58 VNIELGKLDPKIGEAIVKASEEVI-NGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIE 116
N EL + + AI+ A +EV+ NGK D FP+ V+Q G+GT NMN NEV++N +E
Sbjct: 61 ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE 120
Query: 117 ILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKIS 176
++G G ++PNDHVN CQS+ND YPT IA + +L+ + L +K
Sbjct: 121 LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL-IKLVDAINQLREGFERKAV 179
Query: 177 DFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGL 236
+FQDI+K+GRT QDA P+TLGQEF ++ +K +K I+ T + L E+ G TA+GTGL
Sbjct: 180 EFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGL 239
Query: 237 NTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIR 296
NTP ++ + + ++TG P + A + EA + A HGA+ A + KI ND+R
Sbjct: 240 NTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLR 299
Query: 297 FLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHF 356
L SGPR+GL E+ LPE + GSSIMP KVNP E + QVC + GN +T A G
Sbjct: 300 LLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQL 359
Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416
+LNV +P+I + +S+ +L+++ + CI GI A KE + + S+ +VT L I
Sbjct: 360 QLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFI 419
Query: 417 GYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
G+ N ++ K +++E + GL++ E D I + +++P
Sbjct: 420 GHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHP 465
>1j3u_A Aspartase; multi-domains, lyase; 2.50A {Bacillus SP} SCOP:
a.127.1.1
Length = 468
Score = 498 bits (1282), Expect = e-141
Identities = 187/461 (40%), Positives = 295/461 (63%), Gaps = 1/461 (0%)
Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61
T+ R E+D G ++ +D Y+G Q R+ ENF I + +I++LGI+K++AA N+E
Sbjct: 3 TDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANME 62
Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
+G LD ++G+ IVKA++EVI GK +D F + Q G+GT NMN NEVI+NRA+E++G
Sbjct: 63 VGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEE 122
Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
G+ S + PN HVN+ QS+ND +PTA HIA ++++L+ T + + KK +F +
Sbjct: 123 KGNYSKISPNSHVNMSQSTNDAFPTATHIAVL-SLLNQLIETTKYMQQEFMKKADEFAGV 181
Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
IK+GRTH QDA P+ LGQEF YA + I+RI T + LY++ G TAVGTGLN
Sbjct: 182 IKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPE 241
Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
+ V +++ +G P +A + +A D A+ + KIAND+R + SG
Sbjct: 242 YISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASG 301
Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361
PR+GL E++LP +PGSSIMPGKVNP E + QV +FGN IT A+ G FELNV
Sbjct: 302 PRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVM 361
Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421
+P++ +N++QSI ++++ SFT NC++GI+A +E ++ + +S+ ++TA+ +GY+ A
Sbjct: 362 EPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETA 421
Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
+ +A++A+ +++E I G+++ + + I+ P +MI+P
Sbjct: 422 AKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumarate hydratase; 1.95A {Escherichia coli}
SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A*
1fup_A* 2fus_A*
Length = 467
Score = 496 bits (1277), Expect = e-141
Identities = 252/462 (54%), Positives = 330/462 (71%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60
M R+E+DS G + V D+ WGAQ QRSLE+F+I EK P +I AL + K+AAA+VN
Sbjct: 1 MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE 60
Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
+LG L + AI +A++EV+ G+ DD FPL +WQTGSGTQSNMN+NEV++NRA E+LGG
Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120
Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
V G + VHPND VN QSSND +PTA+H+A + +L+P L+ L L +K F D
Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180
Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
I+KIGRT+ QDATPLTLGQE SG+ +++++K IE +L + ELA GGTAVGTGLNT
Sbjct: 181 IVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240
Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
+A +VA + IT PF+TAPNKFEALA DA+ HGA+ A +L KIAND+R+L S
Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300
Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
GPR G+GE+ +PENEPGSSIMPGKVNPTQCEA+T +C + GN AI + G+FELNV
Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360
Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
++PM+ +N LQS++LL+D ++SF +C GI+ +E I LN SLMLVTAL + IGYD
Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420
Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
A+ IAKKAH TLK A+A G +S E+D V+PE+M+
Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGS 462
>3no9_A Fumarase C, fumarate hydratase class II; APO, structural genomics,
TB structural genomics consortium, tricarboxylic acid
cycle; 2.48A {Mycobacterium tuberculosis}
Length = 475
Score = 482 bits (1243), Expect = e-137
Identities = 218/467 (46%), Positives = 287/467 (61%), Gaps = 12/467 (2%)
Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61
N R E D+ G ++V W AQ QR++ENF I IRALG++K A A+VN +
Sbjct: 9 ANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSD 68
Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
LG L P+ +AI+ A+ E+ +G+ DD FP+ V+QTGSGT SNMN NEVI++ A
Sbjct: 69 LGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA------- 121
Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
+HPND VN+ QSSNDT+PTA HIA E V L+P L+ LH AL K D+ +
Sbjct: 122 AKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTV 181
Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
+K GRTH DA P+TLGQEFSGYA Q++ I+R+ L L ELA GGTAVGTGLN P
Sbjct: 182 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDD 241
Query: 242 FAEKVAQNIRDITGLPFI-TAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
F +V + TGL + TA N FEA A D + GA+ T A +L KIANDIR++GS
Sbjct: 242 FGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGS 301
Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
GP +GL E+ LP+ +PGSSIMPGKVNP EA+TQV A + GN AAI + + G FELNV
Sbjct: 302 GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNV 361
Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
Y PM+A N+L+S +LL++ F CI G+ A E+++ S +VT L S IGY+
Sbjct: 362 YIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEE 421
Query: 421 ASMIAKKAHHNSTTLKEEAIASGLI----SATEYDLIVKPEKMIYPH 463
A+ +AK+A T+++ I GLI S + D + M
Sbjct: 422 AAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 468
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
multi-subunit active site; 2.60A {Saccharomyces
cerevisiae} SCOP: a.127.1.1
Length = 488
Score = 480 bits (1237), Expect = e-136
Identities = 287/464 (61%), Positives = 350/464 (75%), Gaps = 3/464 (0%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARV 58
++ R E D+FG + V D+YWGAQ QRS +NFKIG E+ PL ++ A G++K++AA V
Sbjct: 25 NSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIV 84
Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118
N LG LDPKI +AI +A++EV +GKLDDHFPLVV+QTGSGTQSNMN NEVISNRAIEIL
Sbjct: 85 NESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEIL 144
Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178
GG +GSK VHPN+H N QSSNDT+PT +HIA + +I + L+P L NL AL K +F
Sbjct: 145 GGKIGSK-QVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEF 203
Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238
I+KIGRTH QDATPLTLGQEFSGY QV+N I+R+ +L L LAQGGTAVGTGLNT
Sbjct: 204 DHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNT 263
Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
GF K+A+ I TGL F TAPN+FEALA HDAI C GA+NT A +LFKIA DIR+L
Sbjct: 264 KPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYL 323
Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
GSGPR G ELMLPENEPGSSIMPGKVNPTQ EA+TQVC + GN+AAITFA SQG FEL
Sbjct: 324 GSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFEL 383
Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
NV+KP++ N+L SI+L++D+ SF ++C+EGI+A + I L +SLMLVTAL KIGY
Sbjct: 384 NVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGY 443
Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
D AS +AK AH TLKE A+ G+++ E+D V PE M+ P
Sbjct: 444 DAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, lyase; 1.80A {Thermus thermophilus
HB8} SCOP: a.127.1.1
Length = 466
Score = 440 bits (1132), Expect = e-124
Identities = 248/462 (53%), Positives = 324/462 (70%), Gaps = 3/462 (0%)
Query: 4 TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARVNIE 61
R E+D+ G ++V D+YWGAQ QRSLENF+IG ++ PL IIRA G++K+AAAR N+E
Sbjct: 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLE 62
Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
LG+L +I +AI++A+EEV+ GK DDHFPLVV+QTGSGTQ+NMNVNEVI+NRA EILG
Sbjct: 63 LGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 122
Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
+GSK HPNDHVN QSSNDT+PTA+++A A + RL P + L T K F I
Sbjct: 123 LGSK-YAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 181
Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
+K+GRTH DA P+TLGQE +A Q+K ++ ++ GLY LA GGTAVGTGLN
Sbjct: 182 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241
Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
F E VA+ + + TGLPF A N+F ALA HD + GAI T A AL KI ND+R+L SG
Sbjct: 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301
Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361
P +G+GE+ +P NEPGSSIMPGKVNPTQ EA+T V ++GN + FA SQG+F+LNVY
Sbjct: 302 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361
Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421
KP++AY+ L+SI LL+D++ SF + +GI+ E I+ L ++ ML TAL IGYD A
Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 421
Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
+ I KKA TLK+ A+ G ++ E+D IV P ++ PH
Sbjct: 422 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 247 bits (632), Expect = 3e-66
Identities = 78/430 (18%), Positives = 155/430 (36%), Gaps = 35/430 (8%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
+ + + A A+ ++G + I +A++ I D T +G N+
Sbjct: 27 VSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDALATATGLAGNI 81
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
+ V AI +V+ +S D TA + C + + + +
Sbjct: 82 AIPFVKQLTAIVKDADE-------DAARYVHWGATSQDILDTACILQCRDAL-AIVQNQV 133
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
+ + + ++ + +GRT Q A P+TLG + + +A+ K + RI +
Sbjct: 134 QQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRI-NAIKARVL 192
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
+AQ G AVG+ + V + L E D I +
Sbjct: 193 VAQLGGAVGSL-ASLQDQGSIVVEAYAKQLKLGQTACTWHGE----RDRIVEIASVLGII 247
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
+ K+A D + + + E + GSS MP K NP ++ +
Sbjct: 248 TGNVGKMARDWSLMMQTEIAEVFEP-TAKGRGGSSTMPHKRNPVAAASVLAAANRVPALM 306
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
++I + Q H E ++ + L I L+ T++ ++G++ EN+ ++
Sbjct: 307 SSIYQSMVQEH-ERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIEC 365
Query: 405 SLMLV------TALTSKIGYDNASMIAKKAHHNSTT--------LKEEAIASGLISATEY 450
+ L+ AL +G NA + + A + + + + ++
Sbjct: 366 THGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQL 425
Query: 451 DLIVKPEKMI 460
D I KPE +
Sbjct: 426 DEIFKPESYL 435
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 176 bits (448), Expect = 6e-45
Identities = 80/467 (17%), Positives = 151/467 (32%), Gaps = 51/467 (10%)
Query: 13 TMKVQEDRYWGA----QAQRSLENFK--IGEEKQPLVIIRALGIIKQAAARVNIELGKLD 66
+ + D+ WG +E I +++ + A A+ + G L
Sbjct: 2 ASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQR---LSEVDIQGSMAYAKALEKAGILT 58
Query: 67 PKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKS 126
E I+ E++ F + QS+ +++ R E++G
Sbjct: 59 KTELEKILSGLEKISEEWSKGVFVV--------KQSDEDIHTANERRLKELIG------- 103
Query: 127 PVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGR 186
++ +S ND T + + + + L L L ++ + D+I G
Sbjct: 104 --DIAGKLHTGRSRNDQVVTDLKLFMKNSL-SIISTHLLQLIKTLVERAAIEIDVILPGY 160
Query: 187 THTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKV 246
TH Q A P+ Q +A + +R+ + L G A+ G +
Sbjct: 161 THLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA-------GNPLDI 213
Query: 247 AQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGL 306
+ + + N +A++ D + L K+A D+ + S G
Sbjct: 214 DREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI-IYSTSEFGF 272
Query: 307 GELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIA 366
L G+S+MP K NP E I +FG A+I N
Sbjct: 273 LTL-SDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDK 331
Query: 367 YNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR-------SLMLVTALTS-KIGY 418
V + L+ + T I +Q KEN++ +L +L LV + +
Sbjct: 332 EAVFDVVDTLTAVLQVAT-GVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAH 390
Query: 419 DNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPEKMI 460
+ A T+ + ++ S S+ + +
Sbjct: 391 TASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVF-NFVNSV 436
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis; 2.00A {Bacillus
anthracis} PDB: 1f1o_A
Length = 444
Score = 175 bits (445), Expect = 1e-44
Identities = 78/431 (18%), Positives = 155/431 (35%), Gaps = 45/431 (10%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
+A ++ A ELG + + + I + + I+ +++ T+ ++
Sbjct: 29 FKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDR---------IYEIEKETRHDV 79
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
RA+ + V+ +S D TA+ ++ +L L
Sbjct: 80 VAFT----RAVSETPALG------EERKWVHYGLTSTDVVDTALSY-ILKQANEIILKDL 128
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
N L K + + I +GRTH A P T G + + ++K +++R + +
Sbjct: 129 ENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAAN-TVR 187
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
+ + AVGT N + V +N+ + A D A +
Sbjct: 188 VGKLSGAVGTYANIDPFVEKYVCENL-------GLEAAPISTQTLQRDRHAHYMSTLALI 240
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
AT++ K+A +IR L + E + + GSS MP K NP E +T + I G
Sbjct: 241 ATSIEKMAVEIRGLQKSETREVEEA-FAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYM 299
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
+ N E ++ +L + + + + N ++ + EN++ ++ R
Sbjct: 300 MTA-YENVPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTR 358
Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIA----SGLISATE 449
+ L+ + + + YD A +A KE A + ++ E
Sbjct: 359 TYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEE 418
Query: 450 YDLIVKPEKMI 460
+ E +
Sbjct: 419 INECFNYEHHM 429
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus HB8}
Length = 462
Score = 163 bits (414), Expect = 5e-41
Identities = 74/423 (17%), Positives = 131/423 (30%), Gaps = 45/423 (10%)
Query: 54 AAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR 113
AR+ +G L + EAI+K + + FP +MN+ ++
Sbjct: 41 VHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPW----REELEDVHMNLEARLTEL 96
Query: 114 AIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTK 173
P ++ +S ND T + + I L L V + +
Sbjct: 97 VGP-------------PGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVRE 143
Query: 174 KISDFQD-IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAV 232
+ G TH Q A P+ L F Y +K R+E + L E G A+
Sbjct: 144 AEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAAL 203
Query: 233 G-TGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKI 291
TG F + + N +A+A D A+N L ++
Sbjct: 204 AGTGFPIDRHFTARELGFKAPM--------RNSLDAVASRDFALEVLSALNIGMLHLSRM 255
Query: 292 ANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFAN 351
A ++ + + + GSSIMP K NP E I + G ++
Sbjct: 256 AEELILYSTEEFGFVE--VPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVV 313
Query: 352 SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTA 411
N +L ++ + G++ R+E + + L T
Sbjct: 314 KGLPLAYNKDLQEDKEPLLDALATY-RDSLRLLAALLPGLKWRRERMWRAAEGGYTLATE 372
Query: 412 LTSKI---------GYDNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPE 457
L + + + ++ LK+ + L + L+ + E
Sbjct: 373 LADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLL-RLE 431
Query: 458 KMI 460
I
Sbjct: 432 TAI 434
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular evolution; HET: CIT;
2.60A {Pseudomonas putida KT2440} SCOP: a.127.1.1
Length = 450
Score = 157 bits (397), Expect = 5e-39
Identities = 82/430 (19%), Positives = 146/430 (33%), Gaps = 37/430 (8%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
++ + + A AR G + AI A + + + T N
Sbjct: 25 LQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA-------ERYDTGALANAIATAGNS 77
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
+ V + + G +V+L +S D T + + + +
Sbjct: 78 AIPLVKALGKVIATGV-------PEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADL- 129
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
L L+++ D +GRT Q ATP+TLG + +G + +R++ L
Sbjct: 130 GKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLV 189
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
L GG + L A VA+ + + L P + D + +
Sbjct: 190 LQFGGAS--GSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQ----RDRLVEFASVLGLV 243
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
A +L K DI L + E P + GSS MP K NP + + G
Sbjct: 244 AGSLGKFGRDISLLMQTEAGEVFEPSAP-GKGGSSTMPHKRNPVGAAVLIGAATRVPGLL 302
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
+ + A Q H ++ + L I L EG++ ++ +L+
Sbjct: 303 STLFAAMPQEHER-SLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDL 361
Query: 405 SLMLVTA------LTSKIGYDNASMIAKKAHHNS--------TTLKEEAIASGLISATEY 450
+ LV A L ++G D A + ++ + L +E S +S E
Sbjct: 362 TQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEEL 421
Query: 451 DLIVKPEKMI 460
D ++ P +
Sbjct: 422 DRLLDPAHYL 431
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 136 bits (343), Expect = 9e-33
Identities = 54/409 (13%), Positives = 122/409 (29%), Gaps = 24/409 (5%)
Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
+ ++ +AI I + + T ++ E + +
Sbjct: 52 AIKEVPAFAADAIGYLDA--IVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPE 109
Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
+ ++ ++ +S D + + +LP R L L ++D
Sbjct: 110 LH------AVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRD 163
Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
I + RT Q ATP T+G+E + A +++ +++ G P
Sbjct: 164 IPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPE 223
Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
+ ++ G+ + + E + C NT + + R +
Sbjct: 224 VDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNT------ILIDFDRDVWG 277
Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
+ E GSS MP KVNP E + ++ ++
Sbjct: 278 YIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDL 337
Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALT----SKI 416
+ N+ I + T+ + ++ ++++ L+ + ++ +
Sbjct: 338 TDSTVLRNLGVGIGYALIAYQ-STLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRY 396
Query: 417 GYDNASMIAKKAHHNSTTLKE---EAIASGLISATEYD--LIVKPEKMI 460
G + K+ E + I + E + P I
Sbjct: 397 GIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYI 445
>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Length = 459
Score = 134 bits (338), Expect = 3e-32
Identities = 68/420 (16%), Positives = 130/420 (30%), Gaps = 29/420 (6%)
Query: 51 IKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVI 110
AA E+ LD K + + + ++ + + T ++ E
Sbjct: 48 ESLAANDTIPEVPALDNKARKFLSD-----LISNFNESEAEKIKEFEKQTNHDVKAVE-- 100
Query: 111 SNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVA 170
+ ++ ++ +S D A + + I + PT+ + +
Sbjct: 101 ----YYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGS 156
Query: 171 LTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGT 230
+T D+ + RTH Q ATP T+G+E + ++K +++ L G
Sbjct: 157 ITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGN 216
Query: 231 AVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFK 290
P K N GL F + HD IA + L
Sbjct: 217 YNAHVAAYPEVDWRKHCANFVTSLGLSF---NAYTTQIEPHDGIAEVSQIMVRINNILLD 273
Query: 291 IANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFA 350
+ + S G + E GSS MP KVNP E
Sbjct: 274 YT---QDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANK 330
Query: 351 NSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVT 410
+Q + ++ + N+ + S + +Q K +Q L+ + ++
Sbjct: 331 LTQSRMQRDLSDSTVLRNLGVAFS-YSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLA 389
Query: 411 ALTSKI--------GYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVK--PEKMI 460
+ Y+ + + ++ LK + I + I ++K PE
Sbjct: 390 EAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLK-KFIKTLSIPEEAKAELMKLTPETYT 448
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 134 bits (338), Expect = 4e-32
Identities = 72/431 (16%), Positives = 148/431 (34%), Gaps = 47/431 (10%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
R ++ A R ELG + + E I ++ + +++ +N
Sbjct: 19 YRRWLEVELAVTRAYEELGMIPKGVTERIRNNAK----------IDVELFKKIEEK-TNH 67
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
+V + ++G + + +S+D TA +A E L +L
Sbjct: 68 DVVAFVEGIG-SMIG---------EDSRFFHYGLTSSDVLDTANSLALVEAGKILL-ESL 116
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
+ L + + ++ IGRTH A P + G + G+ +++K +++R+E ++ +
Sbjct: 117 KEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSY 176
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
G P + + + D AF +
Sbjct: 177 GKISGAVGNYANVPP--------EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIV 228
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
A + +IA +IR L + E + + GSS MP K NP CE +T + +
Sbjct: 229 AAGIERIAVEIRHLQRTEVLEVEEP-FRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYV 287
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
+ N E ++ + V + N + ++ +E ++ +++
Sbjct: 288 DP-SLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDL 346
Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIA----SGLISATE 449
+ LV + LT K YD A K ++ E + L++ E
Sbjct: 347 TKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEE 406
Query: 450 YDLIVKPEKMI 460
+ + +
Sbjct: 407 LEELFDISYYL 417
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 133 bits (336), Expect = 6e-32
Identities = 75/413 (18%), Positives = 139/413 (33%), Gaps = 48/413 (11%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
I A +++A ELG + E + KAS V++ T
Sbjct: 25 INAYLEVERALVCALEELGVAERGCCEKVNKASVSADE----------VYRLERET--GH 72
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
++ ++ +V+ +SND TA + +
Sbjct: 73 DILSLVLLL------------EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVK-EKA 119
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
R + L ++ + +GRTH Q A P+TLG +F+ Y ++ + +++ + + +
Sbjct: 120 RAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEE--FI 177
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
A+ G AVGT + E + R + + +A ++ A A+
Sbjct: 178 RAKIGGAVGTMASWG----ELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALM 233
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
A ++A +IR L + E GSS MP K NPT E I + ++
Sbjct: 234 AAVFERLAVEIRELSRPEIG-----EVVEGGGGSSAMPHKANPTASERIVSLARYVRALT 288
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
F N E ++ + L D I + + ++ + +E I +L +
Sbjct: 289 HVA-FENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQK 347
Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLIS 446
+L + + Y A + E I L
Sbjct: 348 ALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSL 400
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural genomics
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 129 bits (325), Expect = 1e-30
Identities = 54/421 (12%), Positives = 128/421 (30%), Gaps = 30/421 (7%)
Query: 53 QAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN 112
+ K+ E + + + + + + ++N +V V
Sbjct: 44 LFLNEEELFFEKVTDHSVEVLNQIATNITDSDIA-------RVKAIEEETNHDVKAVE-- 94
Query: 113 RAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALT 172
++ + + ++V+ +S D A + ++P L + + L
Sbjct: 95 YFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLK 154
Query: 173 KKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQG-GTA 231
++ + + RTH Q A+ T G+E + + ++ + + I
Sbjct: 155 DLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFN 214
Query: 232 VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKI 291
+ + + ++ L + + HD I + + L +
Sbjct: 215 AHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQI---QDHDYICELCDGLARANGTLIDL 271
Query: 292 ANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFAN 351
DI S +L + E E GSS MP KVNP E +
Sbjct: 272 CVDIWLYISNNL---LKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKL 328
Query: 352 SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM---- 407
+ ++ + N+ S+ + S + + I + N++ LN++
Sbjct: 329 PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSV-LKGLNKIDIDRRNLEEELNQNWSTLAE 387
Query: 408 -LVTALTSKIGYDNA----SMIAKKAHHNSTTLKEEAIASGL-ISATEYDLI--VKPEKM 459
+ + + Y +A + + ++E + D + + P
Sbjct: 388 PIQIVMK-RHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATY 446
Query: 460 I 460
Sbjct: 447 T 447
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, aspartase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 125 bits (313), Expect = 3e-29
Identities = 66/421 (15%), Positives = 127/421 (30%), Gaps = 42/421 (9%)
Query: 54 AAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR 113
A ++ + +G L + + +A ++ + + ++ S
Sbjct: 39 AWSKALVTVGVLTAEEQAQLEEALNVLLED----------VRARPQQILESDAEDIHSWV 88
Query: 114 AIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTK 173
+++ V ++ +S ND T + + C + + L R L AL +
Sbjct: 89 EGKLIDKVG------QLGKKLHTGRSRNDQVATDLKLWCKDTVSELL-TANRQLQSALVE 141
Query: 174 KISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELA-QGGTAV 232
+ QD + G TH Q A P+T Y + R++ L L G
Sbjct: 142 TAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALA 201
Query: 233 GTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIA 292
GT G T N ++++ D + A L + A
Sbjct: 202 GTAYEIDREQLAG-------WLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFA 253
Query: 293 NDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANS 352
D+ F +G + GSS+MP K NP E I C + G +
Sbjct: 254 EDLIFFNTGEAGFVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLK 311
Query: 353 QGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTIN---CIEGIQARKENIQLSLNRSLMLV 409
N + ++ D + + +E Q + L
Sbjct: 312 GLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELA 371
Query: 410 TALTSK-----IGYDNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPEKM 459
L +K + +A L++ ++ S +I Y ++ +
Sbjct: 372 DYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPIL-SLQSC 430
Query: 460 I 460
+
Sbjct: 431 L 431
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 123 bits (310), Expect = 6e-29
Identities = 75/430 (17%), Positives = 134/430 (31%), Gaps = 41/430 (9%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
I + A AR LG + I A+ +
Sbjct: 27 ISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAP------------EMERLRDDTE 74
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
V I +E L G +++ ++ D TA + + +
Sbjct: 75 IVGYPILPL-VEQLSAHAG-----EAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIE 128
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
+ +D GRTH Q A P+T G + + + + R+E +
Sbjct: 129 SVRKALAALAR-NHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLV 187
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
+ G + G + G+P IT + DA+A +
Sbjct: 188 VEFSGASGTLASLGTRGLDVQRELARELNLGVPSITWHS------ARDAVAETVQFLALV 241
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
+ +L K+A DI + + + E + + SS MP K NP CE + A I NH
Sbjct: 242 SGSLGKLAMDISIMMTTELGEVAEPFVR-HRGASSTMPQKQNPVSCE-LILAGARIVRNH 299
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404
A FE + ++ + ++ I + G+Q + ++ +L+
Sbjct: 300 ATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDH 359
Query: 405 SLMLV------TALTSKIGYDNASMI----AKKAHHNSTTLKEEAIA----SGLISATEY 450
S L+ AL G A I ++A + T L E + +
Sbjct: 360 SRGLIVAEAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEAL 419
Query: 451 DLIVKPEKMI 460
+ P +
Sbjct: 420 RDLTDPRNYL 429
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purine biosynthesis, alternative splicing;
HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Length = 503
Score = 116 bits (292), Expect = 7e-27
Identities = 61/337 (18%), Positives = 110/337 (32%), Gaps = 15/337 (4%)
Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192
++L +S I + LLP L + L + + +G TH Q A
Sbjct: 127 IIHLGATSCYVGDNTDLIILRNAL-DLLLPKLARVISRLADFAKERASLPTLGFTHFQPA 185
Query: 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDG--LYELAQGGTAVGTGLNTPVGFAEKVAQNI 250
T+G+ + + ++ ++ D + + L G KV Q
Sbjct: 186 QLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLD 245
Query: 251 RDIT-GLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGEL 309
+ +T F A + + ++ KI DIR L E
Sbjct: 246 KMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLL---ANLKEMEE 302
Query: 310 MLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNV 369
+ + GSS MP K NP + E + H+ S FE +
Sbjct: 303 PFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRIC 362
Query: 370 LQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM------LVTALTSK-IGYDNA- 421
L L +D+I + N EG+ + I+ + + L ++ A+ +
Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422
Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEK 458
I + ++ +K+E + LI + D P
Sbjct: 423 EKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIH 459
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 99.2 bits (246), Expect = 2e-21
Identities = 53/352 (15%), Positives = 114/352 (32%), Gaps = 24/352 (6%)
Query: 129 HPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTH 188
++L +S A IA + I +L + L ++++ +GRTH
Sbjct: 97 TAAGIIHLGATSCFVQDNADLIAYRDSI-DHILKRFATVIDRLAAFSLKNKEVVTVGRTH 155
Query: 189 TQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYEL--AQGGTAVGTGLNTPVGFAEKV 246
Q A+ +T+G+ +A ++ + + + D + + L G KV
Sbjct: 156 YQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKV 215
Query: 247 AQNIRDITGLPFITAPNKFEA-LACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSG 305
+T + + +++ A K+ DIR G
Sbjct: 216 EALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRV---LQAFG 272
Query: 306 LGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMI 365
+++ GSS MP K NP + E + + + E +
Sbjct: 273 ELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAG 332
Query: 366 AYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM------LVTALTSK-IGY 418
++ + L ++++ + N EG+ + +N++ + + + LT + +
Sbjct: 333 RRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDR 392
Query: 419 DNASMI----AKKAHHNSTTLKEEAI------ASGLISATEYDLIVKPEKMI 460
A + A +A T K + + L+ P
Sbjct: 393 QQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFT 444
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate, cycloisomerase; 2.20A
{Agrobacterium tumefaciens} PDB: 2fen_A
Length = 359
Score = 95.9 bits (237), Expect = 2e-20
Identities = 59/353 (16%), Positives = 101/353 (28%), Gaps = 31/353 (8%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
I A+ + A A+ E EAIV E + G +
Sbjct: 30 IDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAAD---------MSALRHGVAKDG 80
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
V + + + D V+ +S D T++ + L
Sbjct: 81 VVVPELIRQMRAAVA--------GQAADKVHFGATSQDVIDTSLMLRLKMAAEIIA-TRL 131
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
+L L S G T Q A +T+ +G+ ++ + R+E +
Sbjct: 132 GHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFA 191
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
L GG A A V ++ GL + + D IA ++
Sbjct: 192 LQFGGAAGTL--EKLGDNAGAVRADLAKRLGLAD-----RPQWHNQRDGIAEFANLLSLV 244
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344
L K DI + +G + GSS MP K NP E + A
Sbjct: 245 TGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNAETLVT-LARFNAVQ 298
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKEN 397
+ + E + M+ + L + + + I +
Sbjct: 299 ISALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGAD 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 65.0 bits (158), Expect = 3e-11
Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 143/335 (42%)
Query: 9 DSFGTMKVQEDRYWGAQAQRSLEN-FKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDP 67
+SF + ++++ F IG +A + L P
Sbjct: 290 ESF---------F--VSVRKAITVLFFIGVRCY------------EAYPNTS-----LPP 321
Query: 68 KIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM---------NVNEVI-------- 110
+I++ S E N + G S M V + +
Sbjct: 322 ----SILEDSLE--NNE--------------GVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 111 SNRAIEI-L--GG----VMGS-KSPVHPNDHVNLCQSSNDTYPTAIHIACAER---IVHR 159
+ + +EI L G V G +S N + L ++ + I +ER +R
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 160 LLPTLRNLHVALTKKISD-FQDIIKIGRTHTQ---DATPLTLGQEFSGYATQVKNSIKRI 215
LP ++ F H+ A+ L + + +
Sbjct: 420 FLP------------VASPF---------HSHLLVPASDL------------INKDLVKN 446
Query: 216 EMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIA 275
++ + + PV + ++R ++G + E + D I
Sbjct: 447 NVSFNA----KD--------IQIPV-YDTFDGSDLRVLSG-------SISERIV--DCI- 483
Query: 276 FCHGAIN-TSATALFKIANDIRFLGSGPRSGLGEL 309
+ + T FK + + F G G SGLG L
Sbjct: 484 -IRLPVKWETTTQ-FKATHILDF-GPGGASGLGVL 515
Score = 42.2 bits (99), Expect = 3e-04
Identities = 75/425 (17%), Positives = 115/425 (27%), Gaps = 177/425 (41%)
Query: 100 TQSNMNVNEVISNRAIEI----LGGVMGSKSPVHPNDHVNLCQSS-----------NDTY 144
T+ +E + E+ LG V P + ND
Sbjct: 45 TEGFAADDEPTTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-- 100
Query: 145 PTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGY 204
IH + +LL L K +++IK Y
Sbjct: 101 ---IH-----ALAAKLLQEND---TTLVKT----KELIKN-------------------Y 126
Query: 205 ATQVKNSIKRI-EMTLDGLYELAQGGT----AV--GTGLNTPVGFAEKVAQNIRDI--TG 255
T + + + + L+ G A+ G G NT F E +RD+ T
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEE-----LRDLYQTY 180
Query: 256 LPFITAPNKFEALACHDAIAFCHGAINTSATALFKIAND----IRFLGSGPRSGLGELM- 310
+ L I SA L ++ + G L ++
Sbjct: 181 HVLV------GDL------------IKFSAETLSELIRTTLDAEKVFTQG----L-NILE 217
Query: 311 -L--PENEPGS----SIMPGKVNPTQCEAI--TQVC-----AHIFGNH--------AAIT 348
L P N P SI P C I Q+ A + G T
Sbjct: 218 WLENPSNTPDKDYLLSI------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 349 FANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSF---TINCIE-----GI---QA---- 393
+SQG L V IA +DS +SF I G+ +A
Sbjct: 272 -GHSQG---L-VTAVAIA---------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 394 --RKENIQLSLNR-----SLML-VTALTSK-----IGYDNASMIAKKAHHNSTTLKEEAI 440
++ SL S ML ++ LT + + NS + +
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-----------KTNSHLPAGKQV 366
Query: 441 ASGLI 445
L+
Sbjct: 367 EISLV 371
Score = 29.1 bits (65), Expect = 2.3
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 28/98 (28%)
Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSD--SIDSFTINCIEGIQARKENIQLSL 402
A TFA GH + Y L S L+D SI+S +E + R +Q+++
Sbjct: 1755 ADATFA---GH-------SLGEYAALAS---LADVMSIESL----VEVVFYRGMTMQVAV 1797
Query: 403 NRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAI 440
R ++G N MIA + + +EA+
Sbjct: 1798 PRD---------ELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 27.6 bits (61), Expect = 6.9
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
N +K +++L + +++ ++ TI+ G + ++ + N S M+ + G
Sbjct: 1651 NHFKDTYGFSILDIV--INNPVN-LTIH-FGGEKGKR----IRENYSAMIFETIVD--GK 1700
Query: 419 DNASMIAKKAHHNST--TLKEEAIASGLISATEY 450
I K+ + +ST T + E GL+SAT++
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSE---KGLLSATQF 1731
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.0 bits (79), Expect = 0.034
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 21/47 (44%)
Query: 392 QARKENIQLSLNRSLMLVTALTSKIGY--DNASMIAKKAHHNSTTLK 436
QA K+ +Q SL K+ Y D+A +A KA T++
Sbjct: 20 QALKK-LQASL------------KL-YADDSAPALAIKA-----TME 47
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 24/48 (50%)
Query: 38 EKQPLVIIRALGIIK-QAAARVNIELGKL--D---PKIGEAIVKASEE 79
EKQ L K QA+ L KL D P + AI KA+ E
Sbjct: 18 EKQALK--------KLQAS------L-KLYADDSAPAL--AI-KATME 47
Score = 31.5 bits (70), Expect = 0.43
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 25 QAQRSLE-NFKI-GEEKQPLVIIRA 47
QA + L+ + K+ ++ P + I+A
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 38/61 (62%)
Query: 209 KNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL 268
K ++K+++ +L LY A+ D +AP AL
Sbjct: 19 KQALKKLQASLK-LY-------------------AD-------D-------SAP----AL 40
Query: 269 A 269
A
Sbjct: 41 A 41
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 330
Score = 31.8 bits (71), Expect = 0.36
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 214 RIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF 258
+E+ DG + G +G G T +AQ + GL +
Sbjct: 27 FVEIHGDGSANVMFGAADIGQGSGT------AMAQIAAEELGLDY 65
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 31.0 bits (70), Expect = 0.59
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416
+ + ++ N+ ++Q + ++D+ I + K + QL + V+A +
Sbjct: 39 DKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY--KYEHNKAHAQLVREVDVEKVSAFENPY 96
Query: 417 G 417
Sbjct: 97 V 97
>2bcj_Q G alpha I1, guanine nucleotide-binding protein G(Q), alpha subunit,
guanine nucleotide-binding protein G(I)/G(S) /G(O)
gamma-2 subunit; peripheral membrane complex; HET: GDP;
3.06A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB:
2rgn_A*
Length = 353
Score = 29.6 bits (66), Expect = 1.6
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 347 ITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSL 406
I + + + ++ N+ ++Q + ++D+ I + K + QL +
Sbjct: 55 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY--KYEHNKAHAQLVREVDV 112
Query: 407 MLVTALTSKIG 417
V+A +
Sbjct: 113 EKVSAFENPYV 123
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 27.2 bits (60), Expect = 7.7
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 207 QVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFI 259
V IK+IE + LA G VGTG + + DI +P
Sbjct: 215 GVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNK 267
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,765,339
Number of extensions: 172315
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 43
Length of query: 463
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 367
Effective length of database: 3,365,806
Effective search space: 1235250802
Effective search space used: 1235250802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)