RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] (463 letters) >3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, cytoplasm, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Score = 537 bits (1384), Expect = e-153 Identities = 270/460 (58%), Positives = 334/460 (72%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60 M N R E DSFG ++++E YWGAQ QRSL NFKI ++K P ++IRAL I+K+ AA+VN Sbjct: 22 MKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNY 81 Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 E G L+ KI +I KA + ++ G+ +D+FPLVVWQTGSGTQ+NMN+NEVI++ A E L G Sbjct: 82 EFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTG 141 Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 G K PVHPNDHVN QSSND++PTA+HIA +L+P L NL L K D+ Sbjct: 142 KKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDK 201 Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 IIKIGRTH QDATPLTL QEFSGY TQ++ +++RIE L +Y LAQGGTAVGTG+N+ + Sbjct: 202 IIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKI 261 Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 GF K AQ + + T PF TAPNKFE+LA HDA+ G +NT A +L KIANDIR LGS Sbjct: 262 GFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGS 321 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 GPR GLGEL LPENEPGSSIMPGKVNPTQ EA+T VC + GNH +T A S GH ELNV Sbjct: 322 GPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNV 381 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 +KP+I YN+LQSI+LLSDS++SF +C++G++ I ++SLMLVT L IGYDN Sbjct: 382 FKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDN 441 Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460 A+ IAK+AH TLKE A +S E+D IV PEKMI Sbjct: 442 AAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481 >3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Score = 526 bits (1355), Expect = e-150 Identities = 186/461 (40%), Positives = 267/461 (57%), Gaps = 4/461 (0%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARV 58 + TR EQDS G + D Y+G Q R++ENF + + ++RAL ++K+AAA Sbjct: 20 GSMTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATA 79 Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118 N +L +L AIV A +++I+G L + F + V+Q G+GT SNMN NEVI+NRA+E L Sbjct: 80 NYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHL 139 Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178 G G +HPND VN+ QS+ND YPTA+ +A +++ L L A K +F Sbjct: 140 GRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALL-LSQNQVQTALHRLIAAFEAKGREF 198 Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 +IKIGRT QDA P+TLGQEF +A ++ R+E E+ GGTA+GT +N Sbjct: 199 ATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINA 258 Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298 +AE+ + I+G+ N EA A G + A L KIAND+R L Sbjct: 259 SHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLL 318 Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358 SGPRSGLGE+ LP +PGSSIMPGKVNP E++ QVC + GN +T A G +L Sbjct: 319 SSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQL 378 Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418 N ++P+I YN+L S++LL ++ + C++GI+A E + S+ L TAL +GY Sbjct: 379 NAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGY 438 Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM 459 A+ IAK+A + T+ E AI+ GL A+ +++ P +M Sbjct: 439 ARAAEIAKQALASGQTVMEVAISKGL-DASALTIMLDPLRM 478 >3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, acetylation, alternative initiation, anti-oncogene, cell cycle, cytoplasm; 1.95A {Homo sapiens} Length = 490 Score = 504 bits (1299), Expect = e-143 Identities = 300/464 (64%), Positives = 354/464 (76%), Gaps = 3/464 (0%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARV 58 + R E D+FG +KV D+Y+GAQ RS NFKIG E+ P +I+A GI+K+AAA V Sbjct: 27 QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEV 86 Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118 N + G LDPKI AI+KA++EV GKL+DHFPLVVWQTGSGTQ+NMNVNEVISNRAIE+L Sbjct: 87 NQDYG-LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEML 145 Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178 GG +GSK PVHPNDHVN QSSNDT+PTA+HIA A + LLP L+ LH AL K +F Sbjct: 146 GGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEF 205 Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 IIKIGRTHTQDA PLTLGQEFSGY QVK ++ RI+ + +YELA GGTAVGTGLNT Sbjct: 206 AQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNT 265 Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298 +GFAEKVA + +TGLPF+TAPNKFEALA HDA+ GA+NT+A +L KIANDIRFL Sbjct: 266 RIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFL 325 Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358 GSGPRSGLGEL+LPENEPGSSIMPGKVNPTQCEA+T V A + GNH A+T S GHFEL Sbjct: 326 GSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFEL 385 Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418 NV+KPM+ NVL S +LL D+ SFT NC+ GIQA E I +N SLMLVTAL IGY Sbjct: 386 NVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGY 445 Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 D A+ IAK AH N +TLKE AI G ++A ++D VKP+ M+ P Sbjct: 446 DKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489 >1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli B} SCOP: a.127.1.1 Length = 478 Score = 503 bits (1295), Expect = e-143 Identities = 179/466 (38%), Positives = 270/466 (57%), Gaps = 5/466 (1%) Query: 1 MT-NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLV--IIRALGIIKQAAAR 57 M+ N R E+D GT +V D Y+G R++ENF I K + +R + ++K+AAA Sbjct: 1 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM 60 Query: 58 VNIELGKLDPKIGEAIVKASEEVI-NGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIE 116 N EL + + AI+ A +EV+ NGK D FP+ V+Q G+GT NMN NEV++N +E Sbjct: 61 ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE 120 Query: 117 ILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKIS 176 ++G G ++PNDHVN CQS+ND YPT IA + +L+ + L +K Sbjct: 121 LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL-IKLVDAINQLREGFERKAV 179 Query: 177 DFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGL 236 +FQDI+K+GRT QDA P+TLGQEF ++ +K +K I+ T + L E+ G TA+GTGL Sbjct: 180 EFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGL 239 Query: 237 NTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIR 296 NTP ++ + + ++TG P + A + EA + A HGA+ A + KI ND+R Sbjct: 240 NTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLR 299 Query: 297 FLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHF 356 L SGPR+GL E+ LPE + GSSIMP KVNP E + QVC + GN +T A G Sbjct: 300 LLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQL 359 Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416 +LNV +P+I + +S+ +L+++ + CI GI A KE + + S+ +VT L I Sbjct: 360 QLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFI 419 Query: 417 GYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 G+ N ++ K +++E + GL++ E D I + +++P Sbjct: 420 GHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHP 465 >1j3u_A Aspartase; multi-domains, lyase; 2.50A {Bacillus SP} SCOP: a.127.1.1 Length = 468 Score = 498 bits (1282), Expect = e-141 Identities = 187/461 (40%), Positives = 295/461 (63%), Gaps = 1/461 (0%) Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61 T+ R E+D G ++ +D Y+G Q R+ ENF I + +I++LGI+K++AA N+E Sbjct: 3 TDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANME 62 Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121 +G LD ++G+ IVKA++EVI GK +D F + Q G+GT NMN NEVI+NRA+E++G Sbjct: 63 VGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEE 122 Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181 G+ S + PN HVN+ QS+ND +PTA HIA ++++L+ T + + KK +F + Sbjct: 123 KGNYSKISPNSHVNMSQSTNDAFPTATHIAVL-SLLNQLIETTKYMQQEFMKKADEFAGV 181 Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 IK+GRTH QDA P+ LGQEF YA + I+RI T + LY++ G TAVGTGLN Sbjct: 182 IKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPE 241 Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301 + V +++ +G P +A + +A D A+ + KIAND+R + SG Sbjct: 242 YISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASG 301 Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361 PR+GL E++LP +PGSSIMPGKVNP E + QV +FGN IT A+ G FELNV Sbjct: 302 PRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVM 361 Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421 +P++ +N++QSI ++++ SFT NC++GI+A +E ++ + +S+ ++TA+ +GY+ A Sbjct: 362 EPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETA 421 Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 + +A++A+ +++E I G+++ + + I+ P +MI+P Sbjct: 422 AKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462 >1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumarate hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* Length = 467 Score = 496 bits (1277), Expect = e-141 Identities = 252/462 (54%), Positives = 330/462 (71%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60 M R+E+DS G + V D+ WGAQ QRSLE+F+I EK P +I AL + K+AAA+VN Sbjct: 1 MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE 60 Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 +LG L + AI +A++EV+ G+ DD FPL +WQTGSGTQSNMN+NEV++NRA E+LGG Sbjct: 61 DLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 120 Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 V G + VHPND VN QSSND +PTA+H+A + +L+P L+ L L +K F D Sbjct: 121 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 180 Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 I+KIGRT+ QDATPLTLGQE SG+ +++++K IE +L + ELA GGTAVGTGLNT Sbjct: 181 IVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240 Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 +A +VA + IT PF+TAPNKFEALA DA+ HGA+ A +L KIAND+R+L S Sbjct: 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 300 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 GPR G+GE+ +PENEPGSSIMPGKVNPTQCEA+T +C + GN AI + G+FELNV Sbjct: 301 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 360 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 ++PM+ +N LQS++LL+D ++SF +C GI+ +E I LN SLMLVTAL + IGYD Sbjct: 361 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 420 Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 A+ IAKKAH TLK A+A G +S E+D V+PE+M+ Sbjct: 421 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGS 462 >3no9_A Fumarase C, fumarate hydratase class II; APO, structural genomics, TB structural genomics consortium, tricarboxylic acid cycle; 2.48A {Mycobacterium tuberculosis} Length = 475 Score = 482 bits (1243), Expect = e-137 Identities = 218/467 (46%), Positives = 287/467 (61%), Gaps = 12/467 (2%) Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61 N R E D+ G ++V W AQ QR++ENF I IRALG++K A A+VN + Sbjct: 9 ANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSD 68 Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121 LG L P+ +AI+ A+ E+ +G+ DD FP+ V+QTGSGT SNMN NEVI++ A Sbjct: 69 LGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA------- 121 Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181 +HPND VN+ QSSNDT+PTA HIA E V L+P L+ LH AL K D+ + Sbjct: 122 AKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTV 181 Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 +K GRTH DA P+TLGQEFSGYA Q++ I+R+ L L ELA GGTAVGTGLN P Sbjct: 182 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDD 241 Query: 242 FAEKVAQNIRDITGLPFI-TAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 F +V + TGL + TA N FEA A D + GA+ T A +L KIANDIR++GS Sbjct: 242 FGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGS 301 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 GP +GL E+ LP+ +PGSSIMPGKVNP EA+TQV A + GN AAI + + G FELNV Sbjct: 302 GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNV 361 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 Y PM+A N+L+S +LL++ F CI G+ A E+++ S +VT L S IGY+ Sbjct: 362 YIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEE 421 Query: 421 ASMIAKKAHHNSTTLKEEAIASGLI----SATEYDLIVKPEKMIYPH 463 A+ +AK+A T+++ I GLI S + D + M Sbjct: 422 AAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 468 >1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, multi-subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Score = 480 bits (1237), Expect = e-136 Identities = 287/464 (61%), Positives = 350/464 (75%), Gaps = 3/464 (0%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARV 58 ++ R E D+FG + V D+YWGAQ QRS +NFKIG E+ PL ++ A G++K++AA V Sbjct: 25 NSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIV 84 Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118 N LG LDPKI +AI +A++EV +GKLDDHFPLVV+QTGSGTQSNMN NEVISNRAIEIL Sbjct: 85 NESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEIL 144 Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178 GG +GSK VHPN+H N QSSNDT+PT +HIA + +I + L+P L NL AL K +F Sbjct: 145 GGKIGSK-QVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEF 203 Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 I+KIGRTH QDATPLTLGQEFSGY QV+N I+R+ +L L LAQGGTAVGTGLNT Sbjct: 204 DHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNT 263 Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298 GF K+A+ I TGL F TAPN+FEALA HDAI C GA+NT A +LFKIA DIR+L Sbjct: 264 KPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYL 323 Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358 GSGPR G ELMLPENEPGSSIMPGKVNPTQ EA+TQVC + GN+AAITFA SQG FEL Sbjct: 324 GSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFEL 383 Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418 NV+KP++ N+L SI+L++D+ SF ++C+EGI+A + I L +SLMLVTAL KIGY Sbjct: 384 NVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGY 443 Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 D AS +AK AH TLKE A+ G+++ E+D V PE M+ P Sbjct: 444 DAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487 >1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} SCOP: a.127.1.1 Length = 466 Score = 440 bits (1132), Expect = e-124 Identities = 248/462 (53%), Positives = 324/462 (70%), Gaps = 3/462 (0%) Query: 4 TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARVNIE 61 R E+D+ G ++V D+YWGAQ QRSLENF+IG ++ PL IIRA G++K+AAAR N+E Sbjct: 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLE 62 Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121 LG+L +I +AI++A+EEV+ GK DDHFPLVV+QTGSGTQ+NMNVNEVI+NRA EILG Sbjct: 63 LGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 122 Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181 +GSK HPNDHVN QSSNDT+PTA+++A A + RL P + L T K F I Sbjct: 123 LGSK-YAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 181 Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 +K+GRTH DA P+TLGQE +A Q+K ++ ++ GLY LA GGTAVGTGLN Sbjct: 182 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241 Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301 F E VA+ + + TGLPF A N+F ALA HD + GAI T A AL KI ND+R+L SG Sbjct: 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301 Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361 P +G+GE+ +P NEPGSSIMPGKVNPTQ EA+T V ++GN + FA SQG+F+LNVY Sbjct: 302 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361 Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421 KP++AY+ L+SI LL+D++ SF + +GI+ E I+ L ++ ML TAL IGYD A Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 421 Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 + I KKA TLK+ A+ G ++ E+D IV P ++ PH Sbjct: 422 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463 >1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Score = 247 bits (632), Expect = 3e-66 Identities = 78/430 (18%), Positives = 155/430 (36%), Gaps = 35/430 (8%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 + + + A A+ ++G + I +A++ I D T +G N+ Sbjct: 27 VSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDALATATGLAGNI 81 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 + V AI +V+ +S D TA + C + + + + Sbjct: 82 AIPFVKQLTAIVKDADE-------DAARYVHWGATSQDILDTACILQCRDAL-AIVQNQV 133 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 + + + ++ + +GRT Q A P+TLG + + +A+ K + RI + Sbjct: 134 QQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRI-NAIKARVL 192 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 +AQ G AVG+ + V + L E D I + Sbjct: 193 VAQLGGAVGSL-ASLQDQGSIVVEAYAKQLKLGQTACTWHGE----RDRIVEIASVLGII 247 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 + K+A D + + + E + GSS MP K NP ++ + Sbjct: 248 TGNVGKMARDWSLMMQTEIAEVFEP-TAKGRGGSSTMPHKRNPVAAASVLAAANRVPALM 306 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 ++I + Q H E ++ + L I L+ T++ ++G++ EN+ ++ Sbjct: 307 SSIYQSMVQEH-ERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIEC 365 Query: 405 SLMLV------TALTSKIGYDNASMIAKKAHHNSTT--------LKEEAIASGLISATEY 450 + L+ AL +G NA + + A + + + + ++ Sbjct: 366 THGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQL 425 Query: 451 DLIVKPEKMI 460 D I KPE + Sbjct: 426 DEIFKPESYL 435 >1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Score = 176 bits (448), Expect = 6e-45 Identities = 80/467 (17%), Positives = 151/467 (32%), Gaps = 51/467 (10%) Query: 13 TMKVQEDRYWGA----QAQRSLENFK--IGEEKQPLVIIRALGIIKQAAARVNIELGKLD 66 + + D+ WG +E I +++ + A A+ + G L Sbjct: 2 ASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQR---LSEVDIQGSMAYAKALEKAGILT 58 Query: 67 PKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKS 126 E I+ E++ F + QS+ +++ R E++G Sbjct: 59 KTELEKILSGLEKISEEWSKGVFVV--------KQSDEDIHTANERRLKELIG------- 103 Query: 127 PVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGR 186 ++ +S ND T + + + + L L L ++ + D+I G Sbjct: 104 --DIAGKLHTGRSRNDQVVTDLKLFMKNSL-SIISTHLLQLIKTLVERAAIEIDVILPGY 160 Query: 187 THTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKV 246 TH Q A P+ Q +A + +R+ + L G A+ G + Sbjct: 161 THLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA-------GNPLDI 213 Query: 247 AQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGL 306 + + + N +A++ D + L K+A D+ + S G Sbjct: 214 DREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI-IYSTSEFGF 272 Query: 307 GELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIA 366 L G+S+MP K NP E I +FG A+I N Sbjct: 273 LTL-SDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDK 331 Query: 367 YNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR-------SLMLVTALTS-KIGY 418 V + L+ + T I +Q KEN++ +L +L LV + + Sbjct: 332 EAVFDVVDTLTAVLQVAT-GVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAH 390 Query: 419 DNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPEKMI 460 + A T+ + ++ S S+ + + Sbjct: 391 TASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVF-NFVNSV 436 >2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis; 2.00A {Bacillus anthracis} PDB: 1f1o_A Length = 444 Score = 175 bits (445), Expect = 1e-44 Identities = 78/431 (18%), Positives = 155/431 (35%), Gaps = 45/431 (10%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 +A ++ A ELG + + + I + + I+ +++ T+ ++ Sbjct: 29 FKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDR---------IYEIEKETRHDV 79 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 RA+ + V+ +S D TA+ ++ +L L Sbjct: 80 VAFT----RAVSETPALG------EERKWVHYGLTSTDVVDTALSY-ILKQANEIILKDL 128 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 N L K + + I +GRTH A P T G + + ++K +++R + + Sbjct: 129 ENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAAN-TVR 187 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 + + AVGT N + V +N+ + A D A + Sbjct: 188 VGKLSGAVGTYANIDPFVEKYVCENL-------GLEAAPISTQTLQRDRHAHYMSTLALI 240 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 AT++ K+A +IR L + E + + GSS MP K NP E +T + I G Sbjct: 241 ATSIEKMAVEIRGLQKSETREVEEA-FAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYM 299 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 + N E ++ +L + + + + N ++ + EN++ ++ R Sbjct: 300 MTA-YENVPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTR 358 Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIA----SGLISATE 449 + L+ + + + YD A +A KE A + ++ E Sbjct: 359 TYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEE 418 Query: 450 YDLIVKPEKMI 460 + E + Sbjct: 419 INECFNYEHHM 429 >2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus HB8} Length = 462 Score = 163 bits (414), Expect = 5e-41 Identities = 74/423 (17%), Positives = 131/423 (30%), Gaps = 45/423 (10%) Query: 54 AAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR 113 AR+ +G L + EAI+K + + FP +MN+ ++ Sbjct: 41 VHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPW----REELEDVHMNLEARLTEL 96 Query: 114 AIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTK 173 P ++ +S ND T + + I L L V + + Sbjct: 97 VGP-------------PGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVRE 143 Query: 174 KISDFQD-IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAV 232 + G TH Q A P+ L F Y +K R+E + L E G A+ Sbjct: 144 AEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAAL 203 Query: 233 G-TGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKI 291 TG F + + N +A+A D A+N L ++ Sbjct: 204 AGTGFPIDRHFTARELGFKAPM--------RNSLDAVASRDFALEVLSALNIGMLHLSRM 255 Query: 292 ANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFAN 351 A ++ + + + GSSIMP K NP E I + G ++ Sbjct: 256 AEELILYSTEEFGFVE--VPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVV 313 Query: 352 SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTA 411 N +L ++ + G++ R+E + + L T Sbjct: 314 KGLPLAYNKDLQEDKEPLLDALATY-RDSLRLLAALLPGLKWRRERMWRAAEGGYTLATE 372 Query: 412 LTSKI---------GYDNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPE 457 L + + + ++ LK+ + L + L+ + E Sbjct: 373 LADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLL-RLE 431 Query: 458 KMI 460 I Sbjct: 432 TAI 434 >1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular evolution; HET: CIT; 2.60A {Pseudomonas putida KT2440} SCOP: a.127.1.1 Length = 450 Score = 157 bits (397), Expect = 5e-39 Identities = 82/430 (19%), Positives = 146/430 (33%), Gaps = 37/430 (8%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 ++ + + A AR G + AI A + + + T N Sbjct: 25 LQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA-------ERYDTGALANAIATAGNS 77 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 + V + + G +V+L +S D T + + + + Sbjct: 78 AIPLVKALGKVIATGV-------PEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADL- 129 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 L L+++ D +GRT Q ATP+TLG + +G + +R++ L Sbjct: 130 GKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLV 189 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 L GG + L A VA+ + + L P + D + + Sbjct: 190 LQFGGAS--GSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQ----RDRLVEFASVLGLV 243 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 A +L K DI L + E P + GSS MP K NP + + G Sbjct: 244 AGSLGKFGRDISLLMQTEAGEVFEPSAP-GKGGSSTMPHKRNPVGAAVLIGAATRVPGLL 302 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 + + A Q H ++ + L I L EG++ ++ +L+ Sbjct: 303 STLFAAMPQEHER-SLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDL 361 Query: 405 SLMLVTA------LTSKIGYDNASMIAKKAHHNS--------TTLKEEAIASGLISATEY 450 + LV A L ++G D A + ++ + L +E S +S E Sbjct: 362 TQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEEL 421 Query: 451 DLIVKPEKMI 460 D ++ P + Sbjct: 422 DRLLDPAHYL 431 >2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Score = 136 bits (343), Expect = 9e-33 Identities = 54/409 (13%), Positives = 122/409 (29%), Gaps = 24/409 (5%) Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 + ++ +AI I + + T ++ E + + Sbjct: 52 AIKEVPAFAADAIGYLDA--IVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPE 109 Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 + ++ ++ +S D + + +LP R L L ++D Sbjct: 110 LH------AVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRD 163 Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 I + RT Q ATP T+G+E + A +++ +++ G P Sbjct: 164 IPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPE 223 Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 + ++ G+ + + E + C NT + + R + Sbjct: 224 VDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNT------ILIDFDRDVWG 277 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 + E GSS MP KVNP E + ++ ++ Sbjct: 278 YIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDL 337 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALT----SKI 416 + N+ I + T+ + ++ ++++ L+ + ++ + Sbjct: 338 TDSTVLRNLGVGIGYALIAYQ-STLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRY 396 Query: 417 GYDNASMIAKKAHHNSTTLKE---EAIASGLISATEYD--LIVKPEKMI 460 G + K+ E + I + E + P I Sbjct: 397 GIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYI 445 >3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Score = 134 bits (338), Expect = 3e-32 Identities = 68/420 (16%), Positives = 130/420 (30%), Gaps = 29/420 (6%) Query: 51 IKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVI 110 AA E+ LD K + + + ++ + + T ++ E Sbjct: 48 ESLAANDTIPEVPALDNKARKFLSD-----LISNFNESEAEKIKEFEKQTNHDVKAVE-- 100 Query: 111 SNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVA 170 + ++ ++ +S D A + + I + PT+ + + Sbjct: 101 ----YYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGS 156 Query: 171 LTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGT 230 +T D+ + RTH Q ATP T+G+E + ++K +++ L G Sbjct: 157 ITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGN 216 Query: 231 AVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFK 290 P K N GL F + HD IA + L Sbjct: 217 YNAHVAAYPEVDWRKHCANFVTSLGLSF---NAYTTQIEPHDGIAEVSQIMVRINNILLD 273 Query: 291 IANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFA 350 + + S G + E GSS MP KVNP E Sbjct: 274 YT---QDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANK 330 Query: 351 NSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVT 410 +Q + ++ + N+ + S + +Q K +Q L+ + ++ Sbjct: 331 LTQSRMQRDLSDSTVLRNLGVAFS-YSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLA 389 Query: 411 ALTSKI--------GYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVK--PEKMI 460 + Y+ + + ++ LK + I + I ++K PE Sbjct: 390 EAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLK-KFIKTLSIPEEAKAELMKLTPETYT 448 >1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Score = 134 bits (338), Expect = 4e-32 Identities = 72/431 (16%), Positives = 148/431 (34%), Gaps = 47/431 (10%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 R ++ A R ELG + + E I ++ + +++ +N Sbjct: 19 YRRWLEVELAVTRAYEELGMIPKGVTERIRNNAK----------IDVELFKKIEEK-TNH 67 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 +V + ++G + + +S+D TA +A E L +L Sbjct: 68 DVVAFVEGIG-SMIG---------EDSRFFHYGLTSSDVLDTANSLALVEAGKILL-ESL 116 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 + L + + ++ IGRTH A P + G + G+ +++K +++R+E ++ + Sbjct: 117 KEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSY 176 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 G P + + + D AF + Sbjct: 177 GKISGAVGNYANVPP--------EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIV 228 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 A + +IA +IR L + E + + GSS MP K NP CE +T + + Sbjct: 229 AAGIERIAVEIRHLQRTEVLEVEEP-FRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYV 287 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 + N E ++ + V + N + ++ +E ++ +++ Sbjct: 288 DP-SLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDL 346 Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIA----SGLISATE 449 + LV + LT K YD A K ++ E + L++ E Sbjct: 347 TKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEE 406 Query: 450 YDLIVKPEKMI 460 + + + Sbjct: 407 LEELFDISYYL 417 >1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Score = 133 bits (336), Expect = 6e-32 Identities = 75/413 (18%), Positives = 139/413 (33%), Gaps = 48/413 (11%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 I A +++A ELG + E + KAS V++ T Sbjct: 25 INAYLEVERALVCALEELGVAERGCCEKVNKASVSADE----------VYRLERET--GH 72 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 ++ ++ +V+ +SND TA + + Sbjct: 73 DILSLVLLL------------EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVK-EKA 119 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 R + L ++ + +GRTH Q A P+TLG +F+ Y ++ + +++ + + + Sbjct: 120 RAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEE--FI 177 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 A+ G AVGT + E + R + + +A ++ A A+ Sbjct: 178 RAKIGGAVGTMASWG----ELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALM 233 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 A ++A +IR L + E GSS MP K NPT E I + ++ Sbjct: 234 AAVFERLAVEIRELSRPEIG-----EVVEGGGGSSAMPHKANPTASERIVSLARYVRALT 288 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 F N E ++ + L D I + + ++ + +E I +L + Sbjct: 289 HVA-FENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQK 347 Query: 405 SLMLVTA-----------LTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLIS 446 +L + + Y A + E I L Sbjct: 348 ALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSL 400 >2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural genomics consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Score = 129 bits (325), Expect = 1e-30 Identities = 54/421 (12%), Positives = 128/421 (30%), Gaps = 30/421 (7%) Query: 53 QAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN 112 + K+ E + + + + + + ++N +V V Sbjct: 44 LFLNEEELFFEKVTDHSVEVLNQIATNITDSDIA-------RVKAIEEETNHDVKAVE-- 94 Query: 113 RAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALT 172 ++ + + ++V+ +S D A + ++P L + + L Sbjct: 95 YFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLK 154 Query: 173 KKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQG-GTA 231 ++ + + RTH Q A+ T G+E + + ++ + + I Sbjct: 155 DLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFN 214 Query: 232 VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKI 291 + + + ++ L + + HD I + + L + Sbjct: 215 AHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQI---QDHDYICELCDGLARANGTLIDL 271 Query: 292 ANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFAN 351 DI S +L + E E GSS MP KVNP E + Sbjct: 272 CVDIWLYISNNL---LKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKL 328 Query: 352 SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM---- 407 + ++ + N+ S+ + S + + I + N++ LN++ Sbjct: 329 PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSV-LKGLNKIDIDRRNLEEELNQNWSTLAE 387 Query: 408 -LVTALTSKIGYDNA----SMIAKKAHHNSTTLKEEAIASGL-ISATEYDLI--VKPEKM 459 + + + Y +A + + ++E + D + + P Sbjct: 388 PIQIVMK-RHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATY 446 Query: 460 I 460 Sbjct: 447 T 447 >1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, aspartase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457 Score = 125 bits (313), Expect = 3e-29 Identities = 66/421 (15%), Positives = 127/421 (30%), Gaps = 42/421 (9%) Query: 54 AAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR 113 A ++ + +G L + + +A ++ + + ++ S Sbjct: 39 AWSKALVTVGVLTAEEQAQLEEALNVLLED----------VRARPQQILESDAEDIHSWV 88 Query: 114 AIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTK 173 +++ V ++ +S ND T + + C + + L R L AL + Sbjct: 89 EGKLIDKVG------QLGKKLHTGRSRNDQVATDLKLWCKDTVSELL-TANRQLQSALVE 141 Query: 174 KISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELA-QGGTAV 232 + QD + G TH Q A P+T Y + R++ L L G Sbjct: 142 TAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALA 201 Query: 233 GTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIA 292 GT G T N ++++ D + A L + A Sbjct: 202 GTAYEIDREQLAG-------WLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFA 253 Query: 293 NDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANS 352 D+ F +G + GSS+MP K NP E I C + G + Sbjct: 254 EDLIFFNTGEAGFVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLK 311 Query: 353 QGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTIN---CIEGIQARKENIQLSLNRSLMLV 409 N + ++ D + + +E Q + L Sbjct: 312 GLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELA 371 Query: 410 TALTSK-----IGYDNASMIAKKAHHNSTTLKEEAIA-----SGLISATEYDLIVKPEKM 459 L +K + +A L++ ++ S +I Y ++ + Sbjct: 372 DYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPIL-SLQSC 430 Query: 460 I 460 + Sbjct: 431 L 431 >3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Score = 123 bits (310), Expect = 6e-29 Identities = 75/430 (17%), Positives = 134/430 (31%), Gaps = 41/430 (9%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 I + A AR LG + I A+ + Sbjct: 27 ISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAP------------EMERLRDDTE 74 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 V I +E L G +++ ++ D TA + + + Sbjct: 75 IVGYPILPL-VEQLSAHAG-----EAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIE 128 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 + +D GRTH Q A P+T G + + + + R+E + Sbjct: 129 SVRKALAALAR-NHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLV 187 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 + G + G + G+P IT + DA+A + Sbjct: 188 VEFSGASGTLASLGTRGLDVQRELARELNLGVPSITWHS------ARDAVAETVQFLALV 241 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 + +L K+A DI + + + E + + SS MP K NP CE + A I NH Sbjct: 242 SGSLGKLAMDISIMMTTELGEVAEPFVR-HRGASSTMPQKQNPVSCE-LILAGARIVRNH 299 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 A FE + ++ + ++ I + G+Q + ++ +L+ Sbjct: 300 ATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDH 359 Query: 405 SLMLV------TALTSKIGYDNASMI----AKKAHHNSTTLKEEAIA----SGLISATEY 450 S L+ AL G A I ++A + T L E + + Sbjct: 360 SRGLIVAEAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEAL 419 Query: 451 DLIVKPEKMI 460 + P + Sbjct: 420 RDLTDPRNYL 429 >2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purine biosynthesis, alternative splicing; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Score = 116 bits (292), Expect = 7e-27 Identities = 61/337 (18%), Positives = 110/337 (32%), Gaps = 15/337 (4%) Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192 ++L +S I + LLP L + L + + +G TH Q A Sbjct: 127 IIHLGATSCYVGDNTDLIILRNAL-DLLLPKLARVISRLADFAKERASLPTLGFTHFQPA 185 Query: 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDG--LYELAQGGTAVGTGLNTPVGFAEKVAQNI 250 T+G+ + + ++ ++ D + + L G KV Q Sbjct: 186 QLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLD 245 Query: 251 RDIT-GLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGEL 309 + +T F A + + ++ KI DIR L E Sbjct: 246 KMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLL---ANLKEMEE 302 Query: 310 MLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNV 369 + + GSS MP K NP + E + H+ S FE + Sbjct: 303 PFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRIC 362 Query: 370 LQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM------LVTALTSK-IGYDNA- 421 L L +D+I + N EG+ + I+ + + L ++ A+ + Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422 Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEK 458 I + ++ +K+E + LI + D P Sbjct: 423 EKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIH 459 >1yis_A Adenylosuccinate lyase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Score = 99.2 bits (246), Expect = 2e-21 Identities = 53/352 (15%), Positives = 114/352 (32%), Gaps = 24/352 (6%) Query: 129 HPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTH 188 ++L +S A IA + I +L + L ++++ +GRTH Sbjct: 97 TAAGIIHLGATSCFVQDNADLIAYRDSI-DHILKRFATVIDRLAAFSLKNKEVVTVGRTH 155 Query: 189 TQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYEL--AQGGTAVGTGLNTPVGFAEKV 246 Q A+ +T+G+ +A ++ + + + D + + L G KV Sbjct: 156 YQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKV 215 Query: 247 AQNIRDITGLPFITAPNKFEA-LACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSG 305 +T + + +++ A K+ DIR G Sbjct: 216 EALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRV---LQAFG 272 Query: 306 LGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMI 365 +++ GSS MP K NP + E + + + E + Sbjct: 273 ELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAG 332 Query: 366 AYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM------LVTALTSK-IGY 418 ++ + L ++++ + N EG+ + +N++ + + + LT + + Sbjct: 333 RRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDR 392 Query: 419 DNASMI----AKKAHHNSTTLKEEAI------ASGLISATEYDLIVKPEKMI 460 A + A +A T K + + L+ P Sbjct: 393 QQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFT 444 >2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate, cycloisomerase; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Score = 95.9 bits (237), Expect = 2e-20 Identities = 59/353 (16%), Positives = 101/353 (28%), Gaps = 31/353 (8%) Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104 I A+ + A A+ E EAIV E + G + Sbjct: 30 IDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAAD---------MSALRHGVAKDG 80 Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 V + + + D V+ +S D T++ + L Sbjct: 81 VVVPELIRQMRAAVA--------GQAADKVHFGATSQDVIDTSLMLRLKMAAEIIA-TRL 131 Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 +L L S G T Q A +T+ +G+ ++ + R+E + Sbjct: 132 GHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFA 191 Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 L GG A A V ++ GL + + D IA ++ Sbjct: 192 LQFGGAAGTL--EKLGDNAGAVRADLAKRLGLAD-----RPQWHNQRDGIAEFANLLSLV 244 Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNH 344 L K DI + +G + GSS MP K NP E + A Sbjct: 245 TGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNAETLVT-LARFNAVQ 298 Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKEN 397 + + E + M+ + L + + + I + Sbjct: 299 ISALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGAD 351 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 65.0 bits (158), Expect = 3e-11 Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 143/335 (42%) Query: 9 DSFGTMKVQEDRYWGAQAQRSLEN-FKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDP 67 +SF + ++++ F IG +A + L P Sbjct: 290 ESF---------F--VSVRKAITVLFFIGVRCY------------EAYPNTS-----LPP 321 Query: 68 KIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM---------NVNEVI-------- 110 +I++ S E N + G S M V + + Sbjct: 322 ----SILEDSLE--NNE--------------GVPSPMLSISNLTQEQVQDYVNKTNSHLP 361 Query: 111 SNRAIEI-L--GG----VMGS-KSPVHPNDHVNLCQSSNDTYPTAIHIACAER---IVHR 159 + + +EI L G V G +S N + L ++ + I +ER +R Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKFSNR 419 Query: 160 LLPTLRNLHVALTKKISD-FQDIIKIGRTHTQ---DATPLTLGQEFSGYATQVKNSIKRI 215 LP ++ F H+ A+ L + + + Sbjct: 420 FLP------------VASPF---------HSHLLVPASDL------------INKDLVKN 446 Query: 216 EMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIA 275 ++ + + PV + ++R ++G + E + D I Sbjct: 447 NVSFNA----KD--------IQIPV-YDTFDGSDLRVLSG-------SISERIV--DCI- 483 Query: 276 FCHGAIN-TSATALFKIANDIRFLGSGPRSGLGEL 309 + + T FK + + F G G SGLG L Sbjct: 484 -IRLPVKWETTTQ-FKATHILDF-GPGGASGLGVL 515 Score = 42.2 bits (99), Expect = 3e-04 Identities = 75/425 (17%), Positives = 115/425 (27%), Gaps = 177/425 (41%) Query: 100 TQSNMNVNEVISNRAIEI----LGGVMGSKSPVHPNDHVNLCQSS-----------NDTY 144 T+ +E + E+ LG V P + ND Sbjct: 45 TEGFAADDEPTTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-- 100 Query: 145 PTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGY 204 IH + +LL L K +++IK Y Sbjct: 101 ---IH-----ALAAKLLQEND---TTLVKT----KELIKN-------------------Y 126 Query: 205 ATQVKNSIKRI-EMTLDGLYELAQGGT----AV--GTGLNTPVGFAEKVAQNIRDI--TG 255 T + + + + L+ G A+ G G NT F E +RD+ T Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEE-----LRDLYQTY 180 Query: 256 LPFITAPNKFEALACHDAIAFCHGAINTSATALFKIAND----IRFLGSGPRSGLGELM- 310 + L I SA L ++ + G L ++ Sbjct: 181 HVLV------GDL------------IKFSAETLSELIRTTLDAEKVFTQG----L-NILE 217 Query: 311 -L--PENEPGS----SIMPGKVNPTQCEAI--TQVC-----AHIFGNH--------AAIT 348 L P N P SI P C I Q+ A + G T Sbjct: 218 WLENPSNTPDKDYLLSI------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271 Query: 349 FANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSF---TINCIE-----GI---QA---- 393 +SQG L V IA +DS +SF I G+ +A Sbjct: 272 -GHSQG---L-VTAVAIA---------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317 Query: 394 --RKENIQLSLNR-----SLML-VTALTSK-----IGYDNASMIAKKAHHNSTTLKEEAI 440 ++ SL S ML ++ LT + + NS + + Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-----------KTNSHLPAGKQV 366 Query: 441 ASGLI 445 L+ Sbjct: 367 EISLV 371 Score = 29.1 bits (65), Expect = 2.3 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 28/98 (28%) Query: 345 AAITFANSQGHFELNVYKPMIAYNVLQSIQLLSD--SIDSFTINCIEGIQARKENIQLSL 402 A TFA GH + Y L S L+D SI+S +E + R +Q+++ Sbjct: 1755 ADATFA---GH-------SLGEYAALAS---LADVMSIESL----VEVVFYRGMTMQVAV 1797 Query: 403 NRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAI 440 R ++G N MIA + + +EA+ Sbjct: 1798 PRD---------ELGRSNYGMIAINPGRVAASFSQEAL 1826 Score = 27.6 bits (61), Expect = 6.9 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 15/94 (15%) Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418 N +K +++L + +++ ++ TI+ G + ++ + N S M+ + G Sbjct: 1651 NHFKDTYGFSILDIV--INNPVN-LTIH-FGGEKGKR----IRENYSAMIFETIVD--GK 1700 Query: 419 DNASMIAKKAHHNST--TLKEEAIASGLISATEY 450 I K+ + +ST T + E GL+SAT++ Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSE---KGLLSATQF 1731 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.0 bits (79), Expect = 0.034 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 21/47 (44%) Query: 392 QARKENIQLSLNRSLMLVTALTSKIGY--DNASMIAKKAHHNSTTLK 436 QA K+ +Q SL K+ Y D+A +A KA T++ Sbjct: 20 QALKK-LQASL------------KL-YADDSAPALAIKA-----TME 47 Score = 32.3 bits (72), Expect = 0.25 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 24/48 (50%) Query: 38 EKQPLVIIRALGIIK-QAAARVNIELGKL--D---PKIGEAIVKASEE 79 EKQ L K QA+ L KL D P + AI KA+ E Sbjct: 18 EKQALK--------KLQAS------L-KLYADDSAPAL--AI-KATME 47 Score = 31.5 bits (70), Expect = 0.43 Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 25 QAQRSLE-NFKI-GEEKQPLVIIRA 47 QA + L+ + K+ ++ P + I+A Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44 Score = 30.0 bits (66), Expect = 1.1 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 38/61 (62%) Query: 209 KNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL 268 K ++K+++ +L LY A+ D +AP AL Sbjct: 19 KQALKKLQASLK-LY-------------------AD-------D-------SAP----AL 40 Query: 269 A 269 A Sbjct: 41 A 41 >3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Length = 330 Score = 31.8 bits (71), Expect = 0.36 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%) Query: 214 RIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF 258 +E+ DG + G +G G T +AQ + GL + Sbjct: 27 FVEIHGDGSANVMFGAADIGQGSGT------AMAQIAAEELGLDY 65 >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 Score = 31.0 bits (70), Expect = 0.59 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416 + + ++ N+ ++Q + ++D+ I + K + QL + V+A + Sbjct: 39 DKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY--KYEHNKAHAQLVREVDVEKVSAFENPY 96 Query: 417 G 417 Sbjct: 97 V 97 >2bcj_Q G alpha I1, guanine nucleotide-binding protein G(Q), alpha subunit, guanine nucleotide-binding protein G(I)/G(S) /G(O) gamma-2 subunit; peripheral membrane complex; HET: GDP; 3.06A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 2rgn_A* Length = 353 Score = 29.6 bits (66), Expect = 1.6 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 347 ITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSL 406 I + + + ++ N+ ++Q + ++D+ I + K + QL + Sbjct: 55 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY--KYEHNKAHAQLVREVDV 112 Query: 407 MLVTALTSKIG 417 V+A + Sbjct: 113 EKVSAFENPYV 123 >1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Score = 27.2 bits (60), Expect = 7.7 Identities = 15/53 (28%), Positives = 20/53 (37%) Query: 207 QVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFI 259 V IK+IE + LA G VGTG + + DI +P Sbjct: 215 GVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNK 267 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.133 0.380 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,765,339 Number of extensions: 172315 Number of successful extensions: 505 Number of sequences better than 10.0: 1 Number of HSP's gapped: 447 Number of HSP's successfully gapped: 43 Length of query: 463 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 367 Effective length of database: 3,365,806 Effective search space: 1235250802 Effective search space used: 1235250802 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.4 bits)