BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] (463 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/463 (100%), Positives = 463/463 (100%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI Sbjct: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60 Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG Sbjct: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD Sbjct: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV Sbjct: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS Sbjct: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV Sbjct: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN Sbjct: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH Sbjct: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 >gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 435 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 16/246 (6%) Query: 93 VWQTGSGTQSN----MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAI 148 +W+ G N M ++ +I + I L + P H + +S+D T Sbjct: 48 IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGM--TSSDILDTCF 105 Query: 149 HIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208 I R LL + L +L K+ +++D + IGR+H A P T G + + + Sbjct: 106 SIQLM-RSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEF 164 Query: 209 KNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL 268 S KR+ + + A G+ VGT N V Q++ D GL T P + + Sbjct: 165 SRSRKRLLTAREEIAVCAISGS-VGTFSN----IHPYVEQHVADAMGLK--TDPISSQVI 217 Query: 269 ACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPT 328 A D A + A+++ ++A +IR L + E P + GSS MP K NP Sbjct: 218 A-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPI 275 Query: 329 QCEAIT 334 E +T Sbjct: 276 LTENLT 281 >gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 49/335 (14%) Query: 110 ISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHV 169 I R ++G + G ++ +S ND + + E+ + + L+ L Sbjct: 97 IEARLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLT 146 Query: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229 L K + + I G TH Q A P+T G Y I R +++ L E G Sbjct: 147 ILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA 206 Query: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280 A+ G + P+ GF E +I ++ FI L C A C Sbjct: 207 AALA-GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI--------LECLSHSAIC--- 254 Query: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHI 340 A + ++A +I L S P+ L GSSIMP K NP E + I Sbjct: 255 ----AMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI 308 Query: 341 FGNHAAITFANSQGHFELNVYKPMI-----AYNVLQSIQLLSDSIDSFTINCIEGIQARK 395 N A ++ L K M ++ L+++Q++ +I + IE + K Sbjct: 309 --NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNK 362 Query: 396 ENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHH 430 + +Q + +S T L + +A + ++AH+ Sbjct: 363 DRLQEAATKSHSTATDLADWL-VSHAGLPFREAHY 396 >gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 10/45 (22%) Query: 180 DIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224 DI I +T+TQ + LG+E S ++ + DG+YE Sbjct: 315 DICSIAKTNTQKSVSWALGKESSSFSV----------IHCDGVYE 349 >gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 253 ITGLPF--ITAPNKFEALACHDAIAFCHGAINTSATALFKIANDI-RFLGSGPRSGLGEL 309 I G P + P++++ CH +N S +FK A R +G + L Sbjct: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 Query: 310 MLPENEPGSSIM 321 L PG SI+ Sbjct: 100 WLISTRPGMSII 111 >gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 19 DRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE 78 DRY+ AQ L+ K ++ V+ + +I+Q A + + KL KI + + A E Sbjct: 425 DRYFDAQKPWELK--KTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE 482 Query: 79 EVINGKLD 86 LD Sbjct: 483 NRCFQSLD 490 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 411 ALTSKIGYDNASMIAKKAHHNSTTLKEEAIASG 443 + + I Y +I +K + + TTL+ + I G Sbjct: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG 102 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,095 Number of Sequences: 1233 Number of extensions: 10833 Number of successful extensions: 34 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 11 length of query: 463 length of database: 328,796 effective HSP length: 77 effective length of query: 386 effective length of database: 233,855 effective search space: 90268030 effective search space used: 90268030 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)