HHsearch alignment for GI: 254780191 and conserved domain: COG0013
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=2376.44 Aligned_cols=860 Identities=50% Similarity=0.838 Sum_probs=820.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHC
Q ss_conf 97878999999999997898891166756677871002301434755400588799999851115432248987863434
Q gi|254780191|r 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNV 80 (898)
Q Consensus 1 m~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~V 80 (898)
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDieNV 80 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNV 80 (879)
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCEECCCCCCCC----CCHHHC
T ss_conf 5779999999999998779734578886789999768960463014113217888999970010212014----766543
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCC
Q ss_conf 64885001788854223147537889998998613341898123799971882899997566349998997535786665
Q gi|254780191|r 81 GRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNF 160 (898)
Q Consensus 81 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNf 160 (898)
T Consensus 81 G~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNf 160 (879)
T COG0013 81 GYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNF 160 (879)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHCCCCHHHEEECCCCCCC
T ss_conf 76654106777650570667788999999999987450898789799994586678888876329988984535767887
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCEEEEEEHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 45799999877046788538556898887-7788982689600112344304-788756576653101757999999988
Q gi|254780191|r 161 WSMAETGPCGPCSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMGLERMATVLQ 238 (898)
Q Consensus 161 W~~g~~GpcGPcsEi~~d~g~~~~~~~~~-~~~~~~r~lEiwNlVFmq~~~~-~~g~~~~Lp~~~IDTGmGLERl~~vlq 238 (898)
T Consensus 161 W~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ 239 (879)
T COG0013 161 WEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQ 239 (879)
T ss_pred CCCCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 77888-68888558997677666888778867778826897564301101379998755188877156866999999984
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 798530057699999999973067854335---02489999989899998740333344464125778899999999984
Q gi|254780191|r 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 (898)
Q Consensus 239 g~~s~ydtD~f~pii~~i~~~~g~~y~~~~---~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~l 315 (898)
T Consensus 240 ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~L 319 (879)
T COG0013 240 GVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLL 319 (879)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99962144406899999999709767766544432589864578889999837776687773099999999999999974
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 87433104568999998645555557646788999987489899999989999999986115464245743799852458
Q gi|254780191|r 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 (898)
Q Consensus 316 g~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyG 395 (898)
T Consensus 320 G~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYDTyG 399 (879)
T COG0013 320 GIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYG 399 (879)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHCCC
T ss_conf 99936899999999999865667777778999999999999999999999999999998621477357677402310579
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 88899998766507744358889999999997644433110012013567888730488626434444432111222111
Q gi|254780191|r 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 (898)
Q Consensus 396 fP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~ 475 (898)
T Consensus 400 fP~eLt~eia~e~g~~-VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~---------- 467 (879)
T COG0013 400 FPVELTEEIAEERGLK-VDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEM---------- 467 (879)
T ss_pred CCHHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHCCCCCCEEEECCCCCC----------
T ss_conf 9989999999984985-354467999999999866300-2354310134456540478843651156641----------
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEEC-CEEEEEECCCCCCCEEE
Q ss_conf 34445445556553489999747813200047976999973752000368765665145404-24898522456553389
Q gi|254780191|r 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIF 554 (898)
Q Consensus 476 ~~~~~~~~~~~~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~-~~~~~V~dv~k~~~g~i 554 (898)
T Consensus 468 -------------~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~ 534 (879)
T COG0013 468 -------------EFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVI 534 (879)
T ss_pred -------------EEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEE
T ss_conf -------------2799999955844022367853799984687557889967765899955882899988787179669
Q ss_pred EEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98510467875567338884212556777520136889999975212544444553002430000024767899999999
Q gi|254780191|r 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 (898)
Q Consensus 555 ~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~ 634 (898)
T Consensus 535 vH~~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~ 614 (879)
T COG0013 535 VHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKE 614 (879)
T ss_pred EEEEEECCCCCCCCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99985046766889889999889999999862769999999999973732120676467770688531788899999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC
Q ss_conf 99999898873045304661232221000355443155562489984476778553101562225886460110011012
Q gi|254780191|r 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 (898)
Q Consensus 635 IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~ 714 (898)
T Consensus 615 IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig-----~~SvElCGGTHv~~Tg~IG~fkI~~e~ 689 (879)
T COG0013 615 IERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIG-----DFSVELCGGTHVSNTGDIGLFKIISEE 689 (879)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHCHHHHCCCCCCCEEEEEEEC-----CCEEECCCCCCCCCCCCEEEEEEEEEC
T ss_conf 999999999828941489736999997192965288679868999989-----915661377456775650117998764
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--
Q ss_conf 126882899997168999999999999999999839998899999999999999999999999999876365-----3--
Q gi|254780191|r 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----S-- 787 (898)
Q Consensus 715 si~sGvRRIeavtG~~A~~~~~~~~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~-----~-- 787 (898)
T Consensus 690 ~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~ 768 (879)
T COG0013 690 GIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAK 768 (879)
T ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1306758999982789999999999999999998689-866788999999999999999999999998888776530110
Q ss_pred HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 55536952799995799978999999999975499789999953898179999867789726798999999998834999
Q gi|254780191|r 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 (898)
Q Consensus 788 ~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGg 867 (898)
T Consensus 769 ~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~vivl~~~~-~~Kv~~~~~v~~~~~~~~~a~~lvk~la~~~-gG~ 846 (879)
T COG0013 769 AEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIVLASVA-DGKVSLVVAVSKDLTDKVKAGELVKELAAIV-GGK 846 (879)
T ss_pred CEEECCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCEEEEEEEECHHHHCCCCHHHHHHHHHHHC-CCC
T ss_conf 03328879999994478989999999999750478379999852-7708999996514413548999999999862-998
Q ss_pred CCCCCHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9998101145899987889999999998619
Q gi|254780191|r 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 (898)
Q Consensus 868 GGGkpd~AQgGG~~~~~l~eal~~vk~~Lke 898 (898)
T Consensus 847 GGGr~d~Aqggg~d~~~~~~al~~~~~~~~~ 877 (879)
T COG0013 847 GGGRPDMAQGGGKDPEKLDEALELVIEWVKE 877 (879)
T ss_pred CCCCHHHHEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 8896255211789833289999999999984