>TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm.

Probab=98.13  E-value=7.4e-06  Score=64.68  Aligned_cols=148  Identities=25%  Similarity=0.365  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHCC-------CCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             0136889999975212-------544444553002430000024767899999999999998988730453046612322
Q gi|254780191|r  586 NHSATHLLHHALSTIL-------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED  658 (898)
Q Consensus       586 ~HTatHlL~~alr~vL-------G~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~e  658 (898)
T Consensus         1 rh~~Ah~l~~a~k~~~~~~~~~~gp~~-e~GFyy-------D~~~~~~~~~~dl~~ie~~m~~~~~~~~~~~~~~~s~~~   72 (595)
T TIGR00418         1 RHSIAHLLAEAVKQLYPDVKLAVGPVI-EDGFYY-------DFEVDKSITEEDLEKIEKEMKEIIKKNYPIARLSVSLEE   72 (595)
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEEECCC-CCCCCC-------CCCCCHHCCHHHHHHHHHHHHHHHHHHCCEEEEEECHHH
T ss_conf             950124638999704787189982554-787545-------520000027789999999999998640570257724789


Q ss_pred             CCCCHH-------HHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHH----HHHEECCCC-------CCCCC
Q ss_conf             210003-------554431555624899844767785531015622258864601----100110121-------26882
Q gi|254780191|r  659 AIASGA-------AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM----LLYIVSESS-------IRAGI  720 (898)
Q Consensus       659 A~~~ga-------~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG----~fkIise~s-------i~sGv  720 (898)
T Consensus        73 A~~~f~~~~~~~k~~l~~~~~~~~~~~~~y~---~~~~f~dlC~GpHlp~~~~~~~~~~~fkL~~~~gaYw~Gd~~n~~L  149 (595)
T TIGR00418        73 ALEAFKEVGEPLKLELLDEIIPNGEAVTVYG---QGEAFVDLCRGPHLPNTSRIKPAQKAFKLEKVAGAYWRGDSKNEML  149 (595)
T ss_pred             HHHHHHHHCCHHHHHHHHHCCCCCCCEEEEC---CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             9999986213122677851045666420422---5213456157976832356676403456654323310268898537


Q ss_pred             EEEEE---EECHHHHHHHHHHHHHHHH
Q ss_conf             89999---7168999999999999999
Q gi|254780191|r  721 RRIEA---ITGQRARSHLMGQDEKLKS  744 (898)
Q Consensus       721 RRIea---vtG~~A~~~~~~~~~~l~~  744 (898)
T Consensus       150 qRiyGn~~~~~~~~k~~L~~yl~~~eE  176 (595)
T TIGR00418       150 QRIYGNIDITAFADKKQLAEYLKRLEE  176 (595)
T ss_pred             EEECCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             888572545014587899999999999