HHsearch alignment for GI: 254780191 and conserved domain: TIGR00644

>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.71  E-value=0.83  Score=25.14  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             88999999999999999999999999998763653555369527999957999789999999999754997899999538
Q gi|254780191|r  753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK  832 (898)
Q Consensus       753 ~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~~~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~  832 (898)
T Consensus       428 a~~la~~l~~~N~~Rk~i~~~~~~ea~~~~~~~~~~~~l~~~~~~V~~~~~WH~GV~GIvAsrL~~~~~KP~~v~~-~~-  505 (705)
T TIGR00644       428 ARELAEELDELNEERKKIEQEVLKEAEKIAEAELEKSDLTNDSVIVVAKENWHPGVLGIVASRLAETFNKPVIVLA-ID-  505 (705)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE-CC-
T ss_conf             9999999999889999999999999999998414423445781289961786863187788889886389789998-38-


Q ss_pred             CCEEEEEEEECHHHHCCCCHHHHHHHHHH----HHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             98179999867789726798999999998----834999999810114589998788999999999861
Q gi|254780191|r  833 EKKASVLIVVTEDLLDRFNAVDLARLSAK----VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK  897 (898)
Q Consensus       833 ~~k~~ivv~vs~~~~~~~~A~~lik~ia~----~l~GGgGGGkpd~AQgGG~~~~~l~eal~~vk~~Lk  897 (898)
T Consensus       506 ~~~g~~~KGS~RS-i~~~~l~~~l~~~~~~~a~l~~-~-~GG-H~~AAGl~~~~~~l~~f~~~l~~~~~  570 (705)
T TIGR00644       506 EEKGVIAKGSARS-ISGIDLLDLLSELREKGAGLLL-K-FGG-HAMAAGLTLKRENLEEFREKLEEKFK  570 (705)
T ss_pred             CCCCEEEEEEECC-CCCCCHHHHHHHHHHCCCHHHH-C-CCC-CHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9985799877202-1331069899765201301331-2-788-04650555666211899999999998