HHsearch alignment for GI: 254780191 and conserved domain: TIGR00644
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.71 E-value=0.83 Score=25.14 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 88999999999999999999999999998763653555369527999957999789999999999754997899999538
Q gi|254780191|r 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 (898)
Q Consensus 753 ~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~~~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~ 832 (898)
T Consensus 428 a~~la~~l~~~N~~Rk~i~~~~~~ea~~~~~~~~~~~~l~~~~~~V~~~~~WH~GV~GIvAsrL~~~~~KP~~v~~-~~- 505 (705)
T TIGR00644 428 ARELAEELDELNEERKKIEQEVLKEAEKIAEAELEKSDLTNDSVIVVAKENWHPGVLGIVASRLAETFNKPVIVLA-ID- 505 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE-CC-
T ss_conf 9999999999889999999999999999998414423445781289961786863187788889886389789998-38-
Q ss_pred CCEEEEEEEECHHHHCCCCHHHHHHHHHH----HHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 98179999867789726798999999998----834999999810114589998788999999999861
Q gi|254780191|r 833 EKKASVLIVVTEDLLDRFNAVDLARLSAK----VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 (898)
Q Consensus 833 ~~k~~ivv~vs~~~~~~~~A~~lik~ia~----~l~GGgGGGkpd~AQgGG~~~~~l~eal~~vk~~Lk 897 (898)
T Consensus 506 ~~~g~~~KGS~RS-i~~~~l~~~l~~~~~~~a~l~~-~-~GG-H~~AAGl~~~~~~l~~f~~~l~~~~~ 570 (705)
T TIGR00644 506 EEKGVIAKGSARS-ISGIDLLDLLSELREKGAGLLL-K-FGG-HAMAAGLTLKRENLEEFREKLEEKFK 570 (705)
T ss_pred CCCCEEEEEEECC-CCCCCHHHHHHHHHHCCCHHHH-C-CCC-CHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9985799877202-1331069899765201301331-2-788-04650555666211899999999998