HHsearch alignment for GI: 254780191 and conserved domain: cd00496
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=93.63 E-value=0.62 Score=26.13 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCCCCCCCCC-CH---------------HEEECCC-CCCCCCCCC-------CCCCCCC
Q ss_conf 7899999999999789889116675667787-10---------------0230143-475540058-------8799999
Q gi|254780191|r 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TL---------------MFTNSGM-VPFKNIFTG-------QEKPVYQ 59 (898)
Q Consensus 4 ~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~-~l---------------lft~Agm-~~fk~~f~G-------~~~p~~~ 59 (898)
T Consensus 3 l~~~~~~i~~~f~~~GF~~~~gp~ie~~~~NFD~Ln~P~dHPaR~~~DTfy~~~~~~~lLRtHTS~~q~r~l~~~~~p-~ 81 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARALAKLKPP-I 81 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHHHHHHHHCCCC-C
T ss_conf 789999999999877986822895123103045338598875537243278637766021578756679999745898-1
Q ss_pred CCCCCCCCEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHH
Q ss_conf 85111543224898786343464885001788854223147537889998998613341898123799971882899997
Q gi|254780191|r 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKL 139 (898)
Q Consensus 60 r~~~~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~i 139 (898)
T Consensus 82 ~~~~~G~VyR-----~D~----iDatH~~~FhQ~Eg~~v~~~~~~~~Lk~~l~~~~~~lfg~~----------------- 135 (218)
T cd00496 82 RIFSIGRVYR-----NDE----IDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELFGPI----------------- 135 (218)
T ss_pred EEEECCCEEE-----CCC----CCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCC-----------------
T ss_conf 7994250465-----388----98431531257637999565119999999999999973876-----------------
Q ss_pred HHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH-HHHHHHCCCCCCCCC
Q ss_conf 5663499989975357866654579999987704678853855689888777889826896001-123443047887565
Q gi|254780191|r 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL-VFMQFEQQNKQERFI 218 (898)
Q Consensus 140 W~~~~gi~~~~i~~~~~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl-VFmq~~~~~~g~~~~ 218 (898)
T Consensus 136 ----------~~~r-------~rp~yFPFTePS~Evdv~~~------------~~~~WlEv~G~G~v~p-~vL~~~G~d- 184 (218)
T cd00496 136 ----------TKVR-------FRPSYFPFTEPSFEVDVYCP------------GCLGWLEILGCGMVRP-EVLENAGID- 184 (218)
T ss_pred ----------CEEE-------ECCCCCCCCCCCEEEEEEEC------------CCCCCEEEECCCCCCH-HHHHHCCCC-
T ss_conf ----------6453-------67788999998269999965------------8787148850465488-999866979-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 7665310175799999998879853
Q gi|254780191|r 219 LPKMSIDTGMGLERMATVLQEKTNN 243 (898)
Q Consensus 219 Lp~~~IDTGmGLERl~~vlqg~~s~ 243 (898)
T Consensus 185 ~~~~g~AfG~GlERlaMl~~gI~DI 209 (218)
T cd00496 185 EEYSGFAFGIGLERLAMLKYGIPDI 209 (218)
T ss_pred CCCEEEEEEECHHHHHHHHCCCCHH
T ss_conf 9988999852588999998399768