HHsearch alignment for GI: 254780191 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=90.69 E-value=1.3 Score=23.66 Aligned_cols=94 Identities=26% Similarity=0.405 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCC------CCCCCCCC--------CCCCCCCCCCCEEC
Q ss_conf 89999999999978988911667566778710023014347554------00588799--------99985111543224
Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN------IFTGQEKP--------VYQAVTTVQKCVRA 70 (898)
Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~------~f~G~~~p--------~~~r~~~~QkCiR~ 70 (898)
T Consensus 28 s~i~~~iR~fl~~~gF~EVeTP~L~~~-~~-----eg~a~~f~~~~~~~~~yL~~Spel~Kqlli~G~~rVfei~~~FR~ 101 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRA 101 (322)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCC-CC-----CCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCEEEECCEEEC
T ss_conf 999999999999889999979840078-89-----865466762105876001548588999975342443887261407
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHH-HHHHC-CC-----CHHHHHHHHHH
Q ss_conf 898786343464885001788854-22314-75-----37889998998
Q gi|254780191|r 71 GGKHNDLDNVGRTNRHHTFFEMLG-NFSFG-GY-----FKERAIQLAWD 112 (898)
Q Consensus 71 ggkhnDld~VG~t~rH~TfFEMlG-n~Sfg-dY-----fK~eai~~awe 112 (898)
T Consensus 102 E----~----~~t~rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~i~~ 142 (322)
T cd00776 102 E----K----SNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFK 142 (322)
T ss_pred C----C----CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9----9----987534788876525552332899999999999999999