HHsearch alignment for GI: 254780191 and conserved domain: cd00777
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=92.16 E-value=0.96 Score=24.64 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC---HHEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCEE
Q ss_conf 7878999999999997898891166756677871---00230143475540058879---------99998511154322
Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPT---LMFTNSGMVPFKNIFTGQEK---------PVYQAVTTVQKCVR 69 (898)
Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~---llft~Agm~~fk~~f~G~~~---------p~~~r~~~~QkCiR 69 (898)
T Consensus 2 r~Rs~i~~~iR~ff~~~gflEV~TPiL~-~~~~ega~~f~~~~~~~~~~~~~L~~Spel~~k~l~~~g~~rvf~i~~~FR 80 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILT-KSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFR 80 (280)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECEEC
T ss_conf 6699999999999998898998798106-878776766442441688760368879899999998568777579845174
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHHHH
Q ss_conf 4898786343464885001788854-223147537889998998613
Q gi|254780191|r 70 AGGKHNDLDNVGRTNRHHTFFEMLG-NFSFGGYFKERAIQLAWDLLT 115 (898)
Q Consensus 70 ~ggkhnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt 115 (898)
T Consensus 81 ~E-------~~--~~~h~~EFtmLE~e~~~~~~--~d~m~~~E~li~ 116 (280)
T cd00777 81 DE-------DL--RADRQPEFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred CC-------CC--CCCCCHHHHHHHHHCCCCCH--HHHHHHHHHHHH
T ss_conf 78-------88--87663477623442268889--999999999999