HHsearch alignment for GI: 254780191 and conserved domain: pfam01411
>pfam01411 tRNA-synt_2c tRNA synthetases class II (A). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only alanyl-tRNA synthetases.
Probab=100.00 E-value=0 Score=1548.88 Aligned_cols=542 Identities=51% Similarity=0.877 Sum_probs=519.7
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCHHHCCCCC
Q ss_conf 999999999997898891166756677871002301434755400588-7999998511154322489878634346488
Q gi|254780191|r 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTN 84 (898)
Q Consensus 6 eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~-~~p~~~r~~~~QkCiR~ggkhnDld~VG~t~ 84 (898)
T Consensus 1 eiR~~fl~fF~~~gH~~i~s~~lvp~~d~~llft~Agm~~fkp~~~g~~~~pp~~~l~~~Q~CiR~----~DidnVG~t~ 76 (545)
T pfam01411 1 EIRQTFLDFFEKKGHTRVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEDKPPYNRAVNSQKCIRA----GDLDNVGRTA 76 (545)
T ss_pred CHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHCHHHHCCCCCCCCCCCCCCCCCCEEC----CCHHHCCCCC
T ss_conf 968999999987898880786706799998146404601173765498758998872443332443----7654336777
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCC
Q ss_conf 50017888542231475378899989986133418981237999718828999975663499989975357866654579
Q gi|254780191|r 85 RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164 (898)
Q Consensus 85 rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNfW~~g 164 (898)
T Consensus 77 rH~T~FEMlGn~SFg~YfK~eai~~a~e~lt~~l~i~~~~l~~t~~~~d~ea~~~w~~~~g~~~~~i~~~~~~~nfw~~g 156 (545)
T pfam01411 77 RHHTFFEMLGNFSFGDYFKEEAIEFAWELLTKELGLDPERLYVTVYEWDDEAGPIWEKIVGGPEERILRFGDKDNFWEMG 156 (545)
T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCHHHHHHHHCCCCHHHCEECCCCCCEEECC
T ss_conf 75323220334515624378999999999765617886676999888863366768886299999906267777605778
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 9999877046788538556898887--77889826896001123443047887565766531017579999999887985
Q gi|254780191|r 165 ETGPCGPCSEIFFDQGECIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 (898)
Q Consensus 165 ~~GpcGPcsEi~~d~g~~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s 242 (898)
T Consensus 157 ~~gpcgPcseI~~d~G~e~~~~~~~~~~~~~~~~~~EiwNlVF~q~~~~~~g~~~~Lp~~~iDtGmGlER~~~vlq~~~~ 236 (545)
T pfam01411 157 DTGPCGPCSEIDYDRGEEIGGWPSGGTPTADDDRFLEIWNLVFMQFNRESDGTLKPLPKKSIDTGMGLERLVAVLQNVRS 236 (545)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHCCHH
T ss_conf 98899776899976672026888889988888782889999999958766787440662023306753778999837388
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 30057699999999973067854335024899999898999987403333444641257788999999999848743310
Q gi|254780191|r 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 (898)
Q Consensus 243 ~ydtD~f~pii~~i~~~~g~~y~~~~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl 322 (898)
T Consensus 237 ~y~tdlf~~i~~~~~~~~~~~y~~~~~~a~riIaDH~Ra~~f~I~DGv~PSN~grGYvlRrllRRa~r~~~~lg~~~~~L 316 (545)
T pfam01411 237 NYDTDVFIPLIELIEAISGAKYYDETDEAYRVIADHTRALTFAIADGVVPSNEGRGYVLRRILRRALRHAKKLGLKEPFL 316 (545)
T ss_pred HHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 87777555899999998399866665522665177788899986467546777776147899999999998745764209
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 45689999986455555576467889999874898999999899999999861154642457437998524588889999
Q gi|254780191|r 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 (898)
Q Consensus 323 ~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP~dlt~ 402 (898)
T Consensus 317 ~~Lv~~vi~~m~~~YpEL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~l~g~~af~LYDTyGfP~dlt~ 396 (545)
T pfam01411 317 YDLVPTVIEEMGDAYPELKEKEDTIQEILELEEERFAKTLERGLRLLERLIKSLKKKKTLPGEDAFKLYDTYGFPVDLTK 396 (545)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHH
T ss_conf 99999999987525868898689999999999999999999899999999985426870350210230453698989999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87665077443588899999999976444331100120135678887304886264344444321112221113444544
Q gi|254780191|r 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 (898)
Q Consensus 403 eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~~~~~~~~ 482 (898)
T Consensus 397 eia~e~gi~-vD~~~f~~~m~~qr~~sr~~~~~~~~~---~~~~~~~~~~~~t~f~gYe~~~------------------ 454 (545)
T pfam01411 397 EIAEERGLT-VDMPGFEYAMVEQRERSKQAKKEKGEE---LDNSALKELPATTEFLGYDDLE------------------ 454 (545)
T ss_pred HHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHCCCCCCCCCCCCCCC------------------
T ss_conf 999985992-164037999999999978603135632---0178874468997677767677------------------
Q ss_pred CCCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 55565534899997478132000479769999737520003687656651454042489852245655338998510467
Q gi|254780191|r 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562 (898)
Q Consensus 483 ~~~~~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~ 562 (898)
T Consensus 455 -----~~~~V~~i~~~~~~v~~~~~~~~~~VVLDkTpFYaEsGGQvgD~G~I~~~~~~~~V~DvqK~-gg~ilH~~~~~~ 528 (545)
T pfam01411 455 -----AEAKIIALPDDGEFVAEVLAGQEGGVILDRTPFYAESGGQIGDTGYIIGNGGEFRVTDVQKY-GGVVVHKGKLES 528 (545)
T ss_pred -----CCEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEE-CCEEEEEEEECC
T ss_conf -----42799999869867124337882799970897777568988787999649979999864999-999999999635
Q ss_pred CCCCCCCEEEEEEHHHH
Q ss_conf 87556733888421255
Q gi|254780191|r 563 GILRTEMSLVLTIDYQN 579 (898)
Q Consensus 563 g~l~~g~~V~~~VD~~r 579 (898)
T Consensus 529 G~l~~Gd~V~~~VD~~R 545 (545)
T pfam01411 529 GSLKVGDTVIAVVDEDR 545 (545)
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 85178999999967889