HHsearch results for GI: 254780191 and protein with PDBid: 1v4p_A
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A
Probab=99.96 E-value=2e-28 Score=239.77 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=126.1
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 7775201368899999752125444445-530024300000247678999999999999989887304530466123222
Q gi|254780191|r 581 RQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 (898)
Q Consensus 581 ~~~~~~HTatHlL~~alr~vLG~hv~Q~-GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA 659 (898)
...||+|||+|||++|++++||.++.|. |+.+++++.|+||++..++++|+|.+||+.+|++|++|+||++.++++++|
T Consensus 3 ~~~mR~HTa~Hll~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~iE~~~n~~I~~~~~V~~~~~~~eea 82 (157)
T 1v4p_A 3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH
T ss_conf 63388899999999999998485760453010347750799866888887799999999999998478743897389999
Q ss_pred CCCHHHHHH-HHCCCC---CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC-CCCCCCEEEEEEECH
Q ss_conf 100035544-315556---2489984476778553101562225886460110011012-126882899997168
Q gi|254780191|r 660 IASGAAALL-GTKYND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAITGQ 729 (898)
Q Consensus 660 ~~~ga~alf-gekygd---~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~-si~sGvRRIeavtG~ 729 (898)
.+.....++ ...+++ .||||.|++ |++++||||||.|||+||.|+|++.+ +.++|++||+|-.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~iRiv~i~~-----~d~~~CgGTHV~~T~eIg~ikI~~~~~~~~kg~~Ri~f~l~~ 152 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIED-----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT-----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCC-----EEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 9751722221002455566316872388-----479799998759785663199989854321784899999627