HHsearch results for GI: 254780191 and protein with PDBid: 1v4p_A

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A
Probab=99.96  E-value=2e-28  Score=239.77  Aligned_cols=144  Identities=21%  Similarity=0.233  Sum_probs=126.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             7775201368899999752125444445-530024300000247678999999999999989887304530466123222
Q gi|254780191|r  581 RQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA  659 (898)
Q Consensus       581 ~~~~~~HTatHlL~~alr~vLG~hv~Q~-GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA  659 (898)
                      ...||+|||+|||++|++++||.++.|. |+.+++++.|+||++..++++|+|.+||+.+|++|++|+||++.++++++|
T Consensus         3 ~~~mR~HTa~Hll~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~iE~~~n~~I~~~~~V~~~~~~~eea   82 (157)
T 1v4p_A            3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA   82 (157)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH
T ss_conf             63388899999999999998485760453010347750799866888887799999999999998478743897389999


Q ss_pred             CCCHHHHHH-HHCCCC---CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC-CCCCCCEEEEEEECH
Q ss_conf             100035544-315556---2489984476778553101562225886460110011012-126882899997168
Q gi|254780191|r  660 IASGAAALL-GTKYND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAITGQ  729 (898)
Q Consensus       660 ~~~ga~alf-gekygd---~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~-si~sGvRRIeavtG~  729 (898)
                      .+.....++ ...+++   .||||.|++     |++++||||||.|||+||.|+|++.+ +.++|++||+|-.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~iRiv~i~~-----~d~~~CgGTHV~~T~eIg~ikI~~~~~~~~kg~~Ri~f~l~~  152 (157)
T 1v4p_A           83 EKMFGEDMYDLFPVPEDVRILKVVVIED-----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE  152 (157)
T ss_dssp             HHHHGGGGSCSSCCCTTCCEEEEEEETT-----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred             HHHHCCCCCCCCCCCCCCCCEEEEECCC-----EEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCEEEEEEECC
T ss_conf             9751722221002455566316872388-----479799998759785663199989854321784899999627