HHsearch results for GI: 254780191 and protein with PDBid: 1yfs_A
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=0 Score=1408.02 Aligned_cols=455 Identities=46% Similarity=0.831 Sum_probs=432.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHC
Q ss_conf 97878999999999997898891166756677871002301434755400588799999851115432248987863434
Q gi|254780191|r 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNV 80 (898)
Q Consensus 1 m~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~V 80 (898)
.||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||++|+|+||||||+||||||||||
T Consensus 2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~V 81 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (465)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98899999999999986899885887867899997300003443150233589899988854666363358876546650
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCC
Q ss_conf 64885001788854223147537889998998613341898123799971882899997566349998997535786665
Q gi|254780191|r 81 GRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNF 160 (898)
Q Consensus 81 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNf 160 (898)
|+|+|||||||||||||||||||+|||.|||||||++|+||++|||||||++|+|++++|.+.+|||++||++++.+|||
T Consensus 82 G~t~rH~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~~~i~~~~~~dNf 161 (465)
T 1yfs_A 82 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 161 (465)
T ss_dssp TTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHCEECCCCCCC
T ss_conf 88887512322055411587437889999999876650678665379982760788899998609987882304755672
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 45799999877046788538556898887778898268960011234430478875657665310175799999998879
Q gi|254780191|r 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 (898)
Q Consensus 161 W~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~ 240 (898)
|+||++||||||||||||+|+.+ ++++|||||||||||||+|++||+|.|||+||||||||||||+|++||+
T Consensus 162 W~~g~~GpcGPcsEi~yd~~~~~--------~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~ 233 (465)
T 1yfs_A 162 WQMGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGK 233 (465)
T ss_dssp EESSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCEEEEECCCCCC--------CCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 31799988877525786367766--------8987779860002431125799888567776456584199999998378
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 853005769999999997306785433--502489999989899998740333344464125778899999999984874
Q gi|254780191|r 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 (898)
Q Consensus 241 ~s~ydtD~f~pii~~i~~~~g~~y~~~--~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~ 318 (898)
+||||||+|.|+|+++++++|++|... .++|+||||||+||++|||+|||+|||+|||||||||||||+||+++||++
T Consensus 234 ~s~ydtd~f~~li~~~~~~~~~~~~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRrllRRA~r~~~~Lg~~ 313 (465)
T 1yfs_A 234 NSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIE 313 (465)
T ss_dssp SSGGGSTTTHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 87556387899999999985887544544550145650320210244227705326687448999999999998875156
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCC
Q ss_conf 33104568999998645555557646788999987489899999989999999986115--4642457437998524588
Q gi|254780191|r 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396 (898)
Q Consensus 319 ~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~--~~~~lsg~~af~LyDTyGf 396 (898)
.|||++||+.+++.|++.||||.++++.|.+||+.||++|.+||++|++++++.++++. +++.|||++||+|||||||
T Consensus 314 ~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EEerF~~TL~~G~~~l~~~i~~~~~~~~~~lsge~aF~LYDTyGf 393 (465)
T 1yfs_A 314 NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGF 393 (465)
T ss_dssp SCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 31799999999999876545555418999999999999999999989999999999987448981787986532425899
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 889999876650774435888999999999764443311001201356788873048862643444443
Q gi|254780191|r 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 (898)
Q Consensus 397 P~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~ 465 (898)
|+|||++||+|+|++ ||+++|+++|++||++||++++...... ...+..+.+...+|+|+||+.++.
T Consensus 394 P~Dlt~eia~e~gi~-VD~~gF~~~m~eqkerSr~a~k~~~~~~-~~~~~~l~~~~~~TeFvGY~~lE~ 460 (465)
T 1yfs_A 394 PVDLIDEIAREKGLG-IDLEGFQCELEEQRERARKHFKVEAKKV-KPVYSHLKELGKTSAFVGAAALEH 460 (465)
T ss_dssp CHHHHHHHHHTTTCE-ECHHHHHHHHHHHHHTTTTC----------CCCCCTTCHHHHTTSBCGGGC--
T ss_pred CHHHHHHHHHHCCCE-ECHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHCCCCCEEECCHHHCC
T ss_conf 999999999986896-5399999999999999986434575330-568999973489963878154234