Query gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 898 No_of_seqs 260 out of 2790 Neff 6.2 Searched_HMMs 23785 Date Mon May 23 13:34:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780191.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zze_A Alanyl-tRNA synthetase; 100.0 0 0 1699.8 37.6 626 2-729 57-752 (752) 2 2ztg_A Alanyl-tRNA synthetase; 100.0 0 0 1642.4 35.6 615 2-730 60-739 (739) 3 1yfs_A Alanyl-tRNA synthetase; 100.0 0 0 1408.0 20.3 455 1-465 2-460 (465) 4 3hy0_A Alanyl-tRNA synthetase; 100.0 0 0 1369.2 28.9 429 2-434 2-440 (441) 5 3kew_A DHHA1 domain protein; s 100.0 0 0 392.3 17.7 221 487-735 15-235 (241) 6 2e1b_A PH0108, 216AA long hypo 100.0 0 0 379.1 13.2 185 512-726 29-214 (216) 7 1v4p_A Alanyl-tRNA synthetase; 100.0 2E-28 8.4E-33 239.8 12.1 144 581-729 3-152 (157) 8 2zvf_A Alanyl-tRNA synthetase; 99.9 4.6E-22 1.9E-26 189.9 14.9 163 727-898 1-168 (171) 9 3g98_A Alanyl-tRNA synthetase; 99.8 1.3E-18 5.3E-23 163.0 8.4 109 787-897 2-110 (111) 10 1nyr_A Threonyl-tRNA synthetas 99.0 6.5E-10 2.7E-14 94.8 8.2 148 585-739 73-236 (645) 11 1tke_A Threonyl-tRNA synthetas 99.0 2.8E-08 1.2E-12 81.9 13.7 137 583-727 69-222 (224) 12 1qf6_A THRRS, threonyl-tRNA sy 98.9 1.9E-08 8E-13 83.3 12.0 137 585-729 71-224 (642) 13 1j5w_A Glycyl-tRNA synthetase 98.2 3E-05 1.3E-09 58.2 11.9 172 2-246 13-189 (298) 14 2rhq_A Phenylalanyl-tRNA synth 93.8 0.089 3.7E-06 31.0 5.1 210 4-263 55-290 (294) 15 3dsq_A Pyrrolysyl-tRNA synthet 93.2 0.19 7.8E-06 28.5 5.9 101 4-114 73-199 (288) 16 1nnh_A Asparaginyl-tRNA synthe 92.2 0.31 1.3E-05 26.8 6.0 89 5-102 19-127 (294) 17 3a5y_A GENX, putative lysyl-tR 91.7 0.11 4.7E-06 30.2 3.3 95 5-115 40-156 (345) 18 3l4g_A Phenylalanyl-tRNA synth 91.4 0.084 3.5E-06 31.2 2.4 10 582-591 322-331 (508) 19 2zin_A Pyrrolysyl-tRNA synthet 88.0 1.2 4.9E-05 22.3 6.0 26 5-30 81-106 (291) 20 2du3_A O-phosphoseryl-tRNA syn 87.7 0.5 2.1E-05 25.2 4.0 25 669-697 405-429 (534) 21 2odr_B Phosphoseryl-tRNA synth 85.3 1 4.2E-05 22.8 4.5 53 170-243 296-354 (648) 22 2odr_A Phosphoseryl-tRNA synth 85.2 1 4.3E-05 22.7 4.5 53 170-243 296-354 (665) 23 3a74_A Lysyl-tRNA synthetase; 84.0 0.43 1.8E-05 25.6 2.1 17 585-601 172-188 (493) 24 2odr_D Phosphoseryl-tRNA synth 81.5 1.8 7.5E-05 20.9 4.5 28 707-734 471-498 (685) 25 2odr_C Phosphoseryl-tRNA synth 81.5 1.7 7E-05 21.1 4.3 27 708-734 472-498 (701) 26 2wkb_A Macrophage migration in 80.7 1.6 6.6E-05 21.3 4.0 31 102-132 72-102 (125) 27 3fwu_A Macrophage migration in 79.9 1.7 7.3E-05 20.9 4.0 30 102-131 93-122 (133) 28 3fwt_A Macrophage migration in 79.6 1.7 7.2E-05 21.0 3.9 29 102-130 93-121 (133) 29 3b64_A Macrophage migration in 79.2 1.9 7.9E-05 20.7 4.0 28 104-131 74-101 (112) 30 2os5_A Acemif; macrophage migr 78.2 1.8 7.5E-05 20.9 3.6 30 104-133 74-103 (119) 31 2xcz_A Possible ATLS1-like lig 77.7 2.1 8.9E-05 20.3 3.9 29 103-131 73-101 (115) 32 2du7_A O-phosphoseryl-tRNA syn 76.9 0.92 3.9E-05 23.1 1.8 41 196-245 303-349 (549) 33 3dev_A SH1221; alpha-beta prot 76.1 2.3 9.5E-05 20.0 3.7 80 805-898 234-314 (320) 34 2zxr_A Single-stranded DNA spe 75.7 3.3 0.00014 18.8 11.7 30 98-133 78-109 (666) 35 3dma_A Exopolyphosphatase-rela 75.4 2.3 9.8E-05 19.9 3.6 81 809-898 258-343 (343) 36 1dpt_A D-dopachrome tautomeras 75.0 2.8 0.00012 19.3 3.9 36 97-132 63-102 (117) 37 1uiz_A MIF, macrophage migrati 74.2 3 0.00012 19.1 3.9 28 105-132 75-102 (115) 38 1hfo_A Migration inhibitory fa 72.5 3.4 0.00014 18.6 3.9 28 105-132 74-101 (113) 39 3djh_A Macrophage migration in 72.1 3.4 0.00014 18.7 3.7 27 106-132 75-101 (114) 40 1b7y_A Phers, protein (phenyla 71.3 1.3 5.6E-05 21.8 1.5 17 626-642 227-244 (350) 41 2i7u_A Four-alpha-helix bundle 68.2 2.5 0.0001 19.7 2.4 45 854-898 17-61 (62) 42 3i7f_A Aspartyl-tRNA synthetas 68.1 1.4 5.7E-05 21.8 1.0 78 59-154 35-121 (548) 43 1l0w_A Aspartyl-tRNA synthetas 66.8 1.2 4.9E-05 22.3 0.4 15 631-645 250-264 (580) 44 1e1o_A Lysyl-tRNA synthetase; 63.6 1.4 5.8E-05 21.7 0.3 10 592-601 188-197 (504) 45 1c0a_A Aspartyl tRNA synthetas 62.3 1.6 6.7E-05 21.2 0.4 10 634-643 247-256 (585) 46 3m4p_A Ehasnrs, asparaginyl-tR 61.7 1.6 6.9E-05 21.1 0.4 10 37-46 5-14 (456) 47 1mww_A Hypothetical protein HI 57.8 6.9 0.00029 16.3 3.0 28 103-130 75-102 (128) 48 2kw7_A Conserved domain protei 56.6 7.3 0.00031 16.0 10.7 92 793-896 48-146 (157) 49 3ej9_A Alpha-subunit of trans- 48.9 9.4 0.0004 15.2 3.0 29 103-131 17-45 (76) 50 1wjw_A Phosphoacetylglucosamin 48.3 9.6 0.0004 15.1 5.8 67 805-874 39-106 (112) 51 1mji_A 50S ribosomal protein L 47.1 8.2 0.00035 15.7 2.0 33 565-600 82-114 (182) 52 2ebd_A 3-oxoacyl-[acyl-carrier 43.8 11 0.00047 14.6 3.0 13 671-683 286-298 (309) 53 1dny_A Non-ribosomal peptide s 40.9 12 0.00051 14.3 2.3 23 137-164 20-42 (91) 54 2jgp_A Tyrocidine synthetase 3 40.3 12 0.00052 14.2 2.3 24 136-164 15-38 (520) 55 2p1m_A SKP1-like protein 1A; F 40.3 7 0.0003 16.2 0.8 33 612-645 128-160 (160) 56 2arh_A Hypothetical protein AQ 39.3 13 0.00054 14.1 3.1 19 243-261 79-97 (203) 57 2gia_B MRP1, mitochondrial RNA 39.0 13 0.00053 14.2 2.0 49 548-603 101-149 (187) 58 2di4_A Zinc protease, cell div 37.6 4.3 0.00018 17.9 -0.6 51 347-397 155-205 (238) 59 3fia_A Intersectin-1; EH 1 dom 37.4 12 0.00052 14.2 1.7 47 378-424 45-94 (121) 60 1eak_A 72 kDa type IV collagen 36.2 14 0.0006 13.8 3.5 49 587-638 361-413 (421) 61 2prs_A High-affinity zinc upta 35.9 7.4 0.00031 16.0 0.4 82 739-820 130-223 (284) 62 3e1y_E Eukaryotic peptide chai 33.6 16 0.00066 13.5 3.0 32 485-516 41-72 (204) 63 1bxn_I Rubisco, protein (ribul 33.3 16 0.00066 13.4 7.0 92 621-720 8-121 (139) 64 3m21_A Probable tautomerase HP 32.3 16 0.00068 13.3 1.7 28 103-130 19-46 (67) 65 1eaq_A RUNT-related transcript 30.8 7 0.0003 16.2 -0.4 18 72-89 84-101 (140) 66 3cx3_A Lipoprotein; zinc-bindi 30.6 12 0.0005 14.4 0.7 200 588-820 15-226 (284) 67 1ydo_A HMG-COA lyase; TIM-barr 30.1 18 0.00074 13.0 4.2 28 696-725 205-232 (307) 68 2flt_A CIS-3-chloroacrylic aci 29.5 18 0.00076 13.0 4.2 27 103-129 78-104 (149) 69 2roq_A Enterobactin synthetase 29.3 16 0.00067 13.4 1.2 25 135-164 21-45 (343) 70 3gpu_A DNA glycosylase; DNA gl 29.0 7.8 0.00033 15.8 -0.4 24 624-647 191-214 (256) 71 1z7m_A ATP phosphoribosyltrans 28.5 19 0.00079 12.9 2.9 18 874-891 319-336 (344) 72 3f6t_A Aspartate aminotransfer 27.8 19 0.00081 12.8 3.9 34 303-339 100-135 (533) 73 1emz_A Envelope glycoprotein E 27.5 17 0.0007 13.2 1.0 12 87-98 10-21 (26) 74 2yy0_A C-MYC-binding protein; 27.2 20 0.00083 12.7 1.9 22 753-774 28-49 (53) 75 3od1_A ATP phosphoribosyltrans 27.1 20 0.00083 12.7 3.9 24 5-28 28-51 (400) 76 1p9b_A Adenylosuccinate synthe 25.2 4.8 0.0002 17.5 -2.1 66 270-338 117-185 (442) 77 3gi1_A LBP, laminin-binding pr 24.4 10 0.00043 14.9 -0.5 195 588-819 17-227 (286) 78 1ag7_A Conotoxin GS; neurotoxi 24.4 18 0.00075 13.0 0.7 13 62-77 22-34 (34) 79 1zow_A 3-oxoacyl-[acyl-carrier 23.8 22 0.00094 12.2 3.0 13 671-683 288-300 (313) 80 2rh3_A Protein VIRC2; ribbon-h 23.6 23 0.00095 12.2 1.9 35 390-429 71-105 (121) 81 2oa5_A Hypothetical protein BQ 23.2 23 0.00096 12.2 2.7 26 750-775 7-32 (110) 82 1jb0_D Photosystem 1 reaction 23.2 18 0.00076 12.9 0.6 15 542-556 81-95 (138) 83 2dla_A 397AA long hypothetical 23.1 11 0.00046 14.6 -0.6 137 222-373 31-192 (222) 84 1bwv_S Rubisco, protein (ribul 22.8 23 0.00098 12.1 5.0 94 621-720 8-121 (138) 85 2kgr_A Intersectin-1; structur 21.9 24 0.001 12.0 1.0 48 377-424 26-76 (111) 86 2x1d_A Acyl-coenzyme A\:6-amin 21.8 24 0.001 12.0 4.4 44 300-343 20-68 (357) 87 1m1j_C Fibrinogen gamma chain; 21.4 25 0.001 11.9 4.8 20 315-334 15-34 (409) 88 2aal_A Malonate semialdehyde d 20.9 25 0.0011 11.8 3.4 21 625-645 10-30 (131) 89 1svd_M Ribulose bisphosphate c 20.7 25 0.0011 11.8 5.4 59 621-682 16-94 (110) 90 2btv_A T2A, T2B, protein (VP3 20.7 26 0.0011 11.8 1.8 48 219-266 197-252 (901) 91 2vec_A YHAK, pirin-like protei 20.4 16 0.00069 13.3 -0.1 14 512-525 89-102 (256) 92 1baz_A ARC repressor; transcri 20.4 26 0.0011 11.7 3.5 31 398-429 19-49 (53) 93 1nla_A Transcriptional repress 20.3 26 0.0011 11.7 3.5 32 398-430 19-50 (64) 94 3ba0_A Macrophage metalloelast 20.2 22 0.00091 12.3 0.5 19 247-265 106-124 (365) 95 2dhr_A FTSH; AAA+ protein, hex 20.2 22 0.00095 12.2 0.5 13 576-588 202-214 (499) 96 1m1j_B Fibrinogen beta chain; 20.1 26 0.0011 11.7 8.1 15 213-227 30-44 (464) No 1 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Probab=100.00 E-value=0 Score=1699.79 Aligned_cols=626 Identities=27% Similarity=0.464 Sum_probs=571.3 Q ss_pred CCHHHHHHHHHHHHHHC---CCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH Q ss_conf 78789999999999978---9889116675667787100230143475540-0588799999851115432248987863 Q gi|254780191|r 2 SNVSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL 77 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~---~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl 77 (898) +|++|||++||+||++| ||++||||||||+||||||||||||+||||| |+|.++||++|+|+||||||+ ||| T Consensus 57 ~~~~eiR~~fl~fF~~~~~~gH~~i~~~pvvp~~~~~llft~Agm~~Fkp~v~~G~~~pp~~~l~~sQ~CiR~----nDl 132 (752) T 2zze_A 57 YTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDI 132 (752) T ss_dssp CCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----TTG T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC----CCH T ss_conf 8999999999998386888997387147837799998246603664355721578768999972455200003----747 Q ss_pred HHCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEE Q ss_conf 43464885001788854223147-----5378899989986133418981237999718828999975663499989975 Q gi|254780191|r 78 DNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152 (898) Q Consensus 78 d~VG~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~ 152 (898) ||||+|+|||||||||||||||| |||+|||+|||||||++||+||++|+ T Consensus 133 dnVG~t~rH~T~FEMlGn~sFg~~~~~~Y~k~e~i~~~~e~lt~~lgi~~~~i~-------------------------- 186 (752) T 2zze_A 133 DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT-------------------------- 186 (752) T ss_dssp GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE-------------------------- T ss_pred HHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECHHHCC-------------------------- T ss_conf 655788764055760412512899701769999999999975212342576615-------------------------- Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCC------------CCCCC Q ss_conf 357866654579999987704678853855689888777889826896001123443047887------------56576 Q gi|254780191|r 153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------------RFILP 220 (898) Q Consensus 153 ~~~~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~------------~~~Lp 220 (898) .+||||+|| ||||||||||| |+|||||||||||+++.+|. |.||| T Consensus 187 ---~~en~W~~G--G~~GPc~Ei~~------------------~glEi~nlVFmq~~~~~~g~~~~~~~~~~~~~~~~Lp 243 (752) T 2zze_A 187 ---FKENPWAGG--GNAGPAFEVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPME 243 (752) T ss_dssp ---EEECCEEET--TEEECEEEEEE------------------TTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEE T ss_pred ---CCCCCCCCC--CCCCCCEEEEE------------------CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf ---545766589--89988756887------------------1444210001002558888756542334530146688 Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------------------- Q ss_conf 65310175799999998879853005769999999997306785433--------------------------------- Q gi|254780191|r 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--------------------------------- 267 (898) Q Consensus 221 ~~~IDTGmGLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~--------------------------------- 267 (898) +|+||||||||||||++||+||||||| |.++|+.+.+.+|+.+.++ T Consensus 244 ~k~VDTGmGLERl~~vlQg~~t~Ydtd-~~~~i~~l~~~~gi~~~~~~~~~~~~~~~g~~di~~~~~~~~~~~~va~~~~ 322 (752) T 2zze_A 244 TXVVDTGYGLERLVWMSQGTPTAYDAV-LGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVG 322 (752) T ss_dssp EEEEEEEEEHHHHHHHHHCCSSHHHHH-SHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHC T ss_conf 786588878999999982899702213-4123455665315442104677655554276560110017789999988738 Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf -----------502489999989899998740333344464125778899999999984874331045689999986455 Q gi|254780191|r 268 -----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336 (898) Q Consensus 268 -----------~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~ 336 (898) ...++||||||+||++|||+|||+|||+|||||||||||||+||+++||++.| |++||+.+++.|++. T Consensus 323 ~~~~~~~~~~~~~~~~~vIaDH~Ral~f~I~DGv~PSN~grGYvlRrilRRA~r~~~~lg~~~~-l~~lv~~~i~~m~~~ 401 (752) T 2zze_A 323 ITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVP-LSEIVALHIXELHKT 401 (752) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHTTT T ss_pred CCHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHH T ss_conf 8803210112554441374308999999986578534455327899999999999986288676-899999999998545 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC Q ss_conf 555576467889999874898999999899999999861154--642457437998524588889999876650774435 Q gi|254780191|r 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 (898) Q Consensus 337 ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~--~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~~vD 414 (898) ||||.++++.|.++|+.||++|.+||++|+++|++.+++.++ .+.|||++||+||||||||+|||++||+|+|+. || T Consensus 402 ypeL~~~~~~I~~ii~~EEe~F~~TL~~G~~~l~~~i~~~~~~~~~~i~ge~aF~LYDTyGfP~Dlt~eiA~E~g~~-VD 480 (752) T 2zze_A 402 FPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVK-VN 480 (752) T ss_dssp CTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCC-CC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCE-EC T ss_conf 86878648999999999999999999987999999997631001356668899999871599889999999872646-30 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 8-889999999997644433110012013567888730488626434444432111222111344454455565534899 Q gi|254780191|r 415 I-ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 (898) Q Consensus 415 ~-~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~ 493 (898) + ..|++.|++|++++|+.+..... ........++|++++|+.... ...+++|+ T Consensus 481 ~~~~f~~~~~~~~~~~k~~~~~~~~------~~~~~~~l~~t~~l~y~~~~~--------------------~e~~a~V~ 534 (752) T 2zze_A 481 IPDNFYSMVAKEAERTKEEKGEELV------DFELLKDLPDTRRLYYEDPFM--------------------XEFDAXVL 534 (752) T ss_dssp CCTTHHHHHHGGGGCC-------CC------CSSSSSSSCCCEEHHHHCTTC--------------------CEEEEEEE T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHCCCCCEEEECCCEE--------------------EEEEEEEE T ss_conf 1457889999999999863455421------212233146641221011124--------------------56788899 Q ss_pred EEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEE Q ss_conf 99747813200047976999973752000368765665145404248985224565533899851046787556733888 Q gi|254780191|r 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 (898) Q Consensus 494 ~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~ 573 (898) .+..+ +||||+||||||||||++|+|+|..++..+.|.++++. +++++|.+ ...+.+.+|++|.+ T Consensus 535 ~i~~~-------------~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~v~~~~~~-~~~i~h~~-~~~~~l~~G~~V~~ 599 (752) T 2zze_A 535 RVIXD-------------WVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXV-GXVIIHXV-EDPGAFXEGMIVHG 599 (752) T ss_dssp EEETT-------------EEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEE-TTEEEEEE-SCGGGCCTTCEEEE T ss_pred EEECC-------------EEECCCCEECCCCCCCCCCEEEEECCCCEEEEEEEECC-CCCEEECC-CCCCCCCCCCEEEE T ss_conf 86505-------------26436740233358988850368404633653222105-74023112-22686588998999 Q ss_pred EEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 42125567775201368899999752125444445530024300000247678999999999999989887304530466 Q gi|254780191|r 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 (898) Q Consensus 574 ~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~ 653 (898) +|||+||..+|+|||||||||+|||++||+||+|+||+|+++++||||+|++++|+|||.+||++||++|++|+||++.+ T Consensus 600 ~ID~~rR~~~mr~HTAtHLL~~alr~vlG~hv~Q~Gs~v~~d~~R~Df~~~~~lt~eel~~IE~~vN~~I~~~~~V~~~~ 679 (752) T 2zze_A 600 XIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEW 679 (752) T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEE T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 71587899999855799999999999868873014675069827998518999999999999999999998589168997 Q ss_pred ECCCCCCCCHHHHHH--HHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECH Q ss_conf 123222100035544--3155562489984476778553101562225886460110011012126882899997168 Q gi|254780191|r 654 MNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 (898) Q Consensus 654 ~~~~eA~~~ga~alf--gekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~ 729 (898) +++++|++.+++++| |++|+++||||+|+ ++|+|+||||||.||||||.|+|++++++++|+|||+|+||+ T Consensus 680 ~~~~ea~~~~~~~l~~~g~~~~~~vRvV~I~-----~~d~e~CGGTHV~nT~eIg~~kI~~~~~i~~Gv~RI~~v~Ge 752 (752) T 2zze_A 680 LPRTTAEQXYGFRLYQGGVVPGREIRVVXIE-----DWDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752) T ss_dssp EEHHHHHHHHCGGGCSSCCCCSSEEEEEEET-----TTEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC T ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEC-----CEEECCCCCCCCCCHHHCCCEEEEEEEEECCCCEEEEEEECC T ss_conf 5799998669820024888889827999989-----935465787030149768856999887686995899998187 No 2 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Probab=100.00 E-value=0 Score=1642.36 Aligned_cols=615 Identities=28% Similarity=0.464 Sum_probs=559.1 Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHC Q ss_conf 78789999999999978988911667566778710023014347554005-88799999851115432248987863434 Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVRAGGKHNDLDNV 80 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~-G~~~p~~~r~~~~QkCiR~ggkhnDld~V 80 (898) +|++|||++||+||++|||++||||||||+||||||||||||+||||||+ |.++||++|+|+||||||+ |||||| T Consensus 60 ~~~~eiR~~fl~FF~~~gH~~i~s~pvvp~~d~~llft~Agm~~Fkp~~~~G~~~pp~~~l~~sQkCiR~----nDld~V 135 (739) T 2ztg_A 60 FELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDLDSV 135 (739) T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECG----GGGGGT T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCHHCHHHHCCCCCCCCCCCCCCCCCCEEC----CCHHHC T ss_conf 8899999999999987898780785828899998467605741061655198668998871455351213----768762 Q ss_pred CCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECC Q ss_conf 64885001788854223147-----5378899989986133418981237999718828999975663499989975357 Q gi|254780191|r 81 GRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT 155 (898) Q Consensus 81 G~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~ 155 (898) |+|+|||||||||||||||| |||+|||.|||||||+ +|+||++ |++ T Consensus 136 G~t~rH~TfFEMlGn~SFg~~~k~~Yfk~e~i~~~~e~l~~-lGi~~~~--------------------------i~~-- 186 (739) T 2ztg_A 136 GRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNE-LGVKKED--------------------------IVY-- 186 (739) T ss_dssp TTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHH-HTCCGGG--------------------------CEE-- T ss_pred CCCCCCCHHEEECCCEECCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHH--------------------------CCC-- T ss_conf 98887630003566503189757777788999999999998-3998999--------------------------014-- Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCC-------CCCCCCCCCCCC Q ss_conf 8666545799999877046788538556898887778898268960011234430478875-------657665310175 Q gi|254780191|r 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-------FILPKMSIDTGM 228 (898) Q Consensus 156 ~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~-------~~Lp~~~IDTGm 228 (898) +||||+|| ||||||+||||| ++||||||||||+++++|++ .|||+++||||| T Consensus 187 -~e~~W~~g--G~~GPc~E~~~~------------------glEi~nlVFmq~~~~~~G~~e~~~~~~~~lp~~~VDTG~ 245 (739) T 2ztg_A 187 -KEEPWAGG--GNAGPCLEAIVG------------------GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGY 245 (739) T ss_dssp -EEEEEEET--TEEEEEEEEEET------------------TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEE T ss_pred -CCCCCCCC--CCCCCCCCCCCC------------------CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf -56752248--996488421338------------------600021001014548998702365445767886416774 Q ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------- Q ss_conf 79999999887985300576999999999730678543350--------------------------------------- Q gi|254780191|r 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------------------------------------- 269 (898) Q Consensus 229 GLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~~~--------------------------------------- 269 (898) ||||++|++||+|||||| +|.|+++.+.+.+++.|..+++ T Consensus 246 GLER~~~v~qg~pt~Yd~-~f~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (739) T 2ztg_A 246 GLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSV 324 (739) T ss_dssp EHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCH T ss_pred CHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH T ss_conf 156665420798884434-3257899999860887676225566668877765176664330257777543444227776 Q ss_pred ----------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf ----------2489999989899998740333344464125778899999999984874331045689999986455555 Q gi|254780191|r 270 ----------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 (898) Q Consensus 270 ----------~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~ype 339 (898) .++||||||+||++|||+|||+|||+|||||||||||||+||+++||+..+ |++||+.+++.| ||| T Consensus 325 ~~~~~~~~~~~~~rvIADH~Ra~~f~IaDGv~PSN~GrGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~~~~---~~e 400 (739) T 2ztg_A 325 EELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLD-LYDLVEMHKKIL---GFE 400 (739) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSC-HHHHHHHHHHHH---CCC T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHH---CCH T ss_conf 7740123431001214289888898860575567677428999999999987655066522-788999888773---212 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCH-HHH Q ss_conf 5764678899998748989999998999999998611546424574379985245888899998766507744358-889 Q gi|254780191|r 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI-ISF 418 (898) Q Consensus 340 L~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~~vD~-~~f 418 (898) +.++++.|++||..||++|.+||++|+++|++++++ ++.+||++||+||||||||+|||++||+|+|+. ||+ ++| T Consensus 401 ~~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~---~~~l~g~~af~LyDTyGfP~Dlt~eia~e~g~~-vd~~~~f 476 (739) T 2ztg_A 401 FDVPLSTVQEILELEKERYRTTVSKGTRLVERLVER---KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAE-VEMPKDI 476 (739) T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSBCCHHHHHHHHHHHCCCHHHHHHHHHHTTCB-CCCCTTH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHH T ss_conf 566788899999999999999998777788887510---367786777647750698889999998864021-0230799 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC Q ss_conf 99999999764443311001201356788873048862643444443211122211134445445556553489999747 Q gi|254780191|r 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 (898) Q Consensus 419 ~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~i~~~ 498 (898) +..|++|++++++..... .++....+.|++++|+..... .+.++|+.+.. T Consensus 477 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~t~~~~y~~~~~~--------------------~~~a~v~~~~~- 526 (739) T 2ztg_A 477 YAELAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLL--------------------EFEAEVIGVEG- 526 (739) T ss_dssp HHHHHHTTSBCCCCCCCC---------CCCSSCCCCCEECTTTCTTCC--------------------EEEEEEEEEET- T ss_pred HHHHHHHHHHHHHHHCCC---------EEEECCCCCCEEEECCCCCEE--------------------EEEEEEEECCC- T ss_conf 999999887877630354---------475025666311210453023--------------------31114662036- Q ss_pred CCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHH Q ss_conf 81320004797699997375200036876566514540424898522456553389985104678755673388842125 Q gi|254780191|r 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 (898) Q Consensus 499 ~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~ 578 (898) ..||||+||||||||||++|+|+|..++..+.|.+|++. +++++|.. ..+.+.+|++|.+.|||+ T Consensus 527 ------------~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~V~~v~k~-~~~~~h~~--~~~~~~~G~~V~~~ID~~ 591 (739) T 2ztg_A 527 ------------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEA-DGVVLHVV--KGAKPEVGTKVKGVIDSD 591 (739) T ss_dssp ------------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEE-TTEEEEEC--CSSCCCTTCEEEEEECHH T ss_pred ------------CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC-CCEEEEEC--CCCCCCCCCCHHHCCCHH T ss_conf ------------479984454455779977874579726964789877642-87544311--477555575234202288 Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 56777520136889999975212544444553002430000024767899999999999998988730453046612322 Q gi|254780191|r 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 (898) Q Consensus 579 rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~e 658 (898) ||..+|+|||||||||+|||++||.||+|+||+|+++++||||+|++++|+|+|.+||++||++|++|+||++.+|+++| T Consensus 592 rR~~~mr~HTAtHLL~~alr~vlG~hv~Q~Gs~v~~~~~r~Df~~~~~ls~eel~~IE~~vN~~I~~~~~V~~~~~~~~e 671 (739) T 2ztg_A 592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIE 671 (739) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH T ss_conf 99999986089999999999984865200776536883688646888999999999999999999809987999769999 Q ss_pred CCCCHHHHHH--HHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECHH Q ss_conf 2100035544--31555624899844767785531015622258864601100110121268828999971689 Q gi|254780191|r 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 (898) Q Consensus 659 A~~~ga~alf--gekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~~ 730 (898) |++.+++++| |++|+++||||+|| .|+|+||||||.|||+||.|||++++++++|+|||||+||++ T Consensus 672 a~~~~~~~~~~~~~~~~~~vRvV~IG------~d~e~CGGTHV~nT~eIg~~kI~~~~~i~~Gv~RIe~v~G~A 739 (739) T 2ztg_A 672 AERKFGFRLYQGGVPPGRKIRVVQVG------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739 (739) T ss_dssp HHHHHCGGGGTTCCCCSSEEEEEEET------TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESCC T ss_pred HHHCCCHHHCCCCCCCCCCEEEEEEC------CCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCEEEEEEEECC T ss_conf 98667812204899989828999969------850568870201097456979999876748828999983079 No 3 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Probab=100.00 E-value=0 Score=1408.02 Aligned_cols=455 Identities=46% Similarity=0.831 Sum_probs=432.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHC Q ss_conf 97878999999999997898891166756677871002301434755400588799999851115432248987863434 Q gi|254780191|r 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNV 80 (898) Q Consensus 1 m~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~V 80 (898) .||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||++|+|+||||||+|||||||||| T Consensus 2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~V 81 (465) T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (465) T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 98899999999999986899885887867899997300003443150233589899988854666363358876546650 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCC Q ss_conf 64885001788854223147537889998998613341898123799971882899997566349998997535786665 Q gi|254780191|r 81 GRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNF 160 (898) Q Consensus 81 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNf 160 (898) |+|+|||||||||||||||||||+|||.|||||||++|+||++|||||||++|+|++++|.+.+|||++||++++.+||| T Consensus 82 G~t~rH~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~~~i~~~~~~dNf 161 (465) T 1yfs_A 82 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 161 (465) T ss_dssp TTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE T ss_pred CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHCEECCCCCCC T ss_conf 88887512322055411587437889999999876650678665379982760788899998609987882304755672 Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 45799999877046788538556898887778898268960011234430478875657665310175799999998879 Q gi|254780191|r 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 (898) Q Consensus 161 W~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~ 240 (898) |+||++||||||||||||+|+.+ ++++|||||||||||||+|++||+|.|||+||||||||||||+|++||+ T Consensus 162 W~~g~~GpcGPcsEi~yd~~~~~--------~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~ 233 (465) T 1yfs_A 162 WQMGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGK 233 (465) T ss_dssp EESSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTC T ss_pred CCCCCCCCCCCCEEEEECCCCCC--------CCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCC T ss_conf 31799988877525786367766--------8987779860002431125799888567776456584199999998378 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 853005769999999997306785433--502489999989899998740333344464125778899999999984874 Q gi|254780191|r 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 (898) Q Consensus 241 ~s~ydtD~f~pii~~i~~~~g~~y~~~--~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~ 318 (898) +||||||+|.|+|+++++++|++|... .++|+||||||+||++|||+|||+|||+|||||||||||||+||+++||++ T Consensus 234 ~s~ydtd~f~~li~~~~~~~~~~~~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRrllRRA~r~~~~Lg~~ 313 (465) T 1yfs_A 234 NSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIE 313 (465) T ss_dssp SSGGGSTTTHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCC T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 87556387899999999985887544544550145650320210244227705326687448999999999998875156 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCC Q ss_conf 33104568999998645555557646788999987489899999989999999986115--4642457437998524588 Q gi|254780191|r 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396 (898) Q Consensus 319 ~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~--~~~~lsg~~af~LyDTyGf 396 (898) .|||++||+.+++.|++.||||.++++.|.+||+.||++|.+||++|++++++.++++. +++.|||++||+||||||| T Consensus 314 ~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EEerF~~TL~~G~~~l~~~i~~~~~~~~~~lsge~aF~LYDTyGf 393 (465) T 1yfs_A 314 NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGF 393 (465) T ss_dssp SCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC T ss_conf 31799999999999876545555418999999999999999999989999999999987448981787986532425899 Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCC Q ss_conf 889999876650774435888999999999764443311001201356788873048862643444443 Q gi|254780191|r 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 (898) Q Consensus 397 P~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~ 465 (898) |+|||++||+|+|++ ||+++|+++|++||++||++++...... ...+..+.+...+|+|+||+.++. T Consensus 394 P~Dlt~eia~e~gi~-VD~~gF~~~m~eqkerSr~a~k~~~~~~-~~~~~~l~~~~~~TeFvGY~~lE~ 460 (465) T 1yfs_A 394 PVDLIDEIAREKGLG-IDLEGFQCELEEQRERARKHFKVEAKKV-KPVYSHLKELGKTSAFVGAAALEH 460 (465) T ss_dssp CHHHHHHHHHTTTCE-ECHHHHHHHHHHHHHTTTTC----------CCCCCTTCHHHHTTSBCGGGC-- T ss_pred CHHHHHHHHHHCCCE-ECHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHCCCCCEEECCHHHCC T ss_conf 999999999986896-5399999999999999986434575330-568999973489963878154234 No 4 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Probab=100.00 E-value=0 Score=1369.17 Aligned_cols=429 Identities=54% Similarity=0.944 Sum_probs=416.3 Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC Q ss_conf 78789999999999978988911667566778710023014347554005887999998511154322489878634346 Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~VG 81 (898) +|++|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++||++|+|+|||||||||||||||||| T Consensus 2 ~s~~eiR~~Fl~FF~~~gH~~v~s~~vvp~~d~~llft~Agm~~Fkp~f~G~~~p~~~rl~~sQkCiR~ggkhnDld~VG 81 (441) T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG 81 (441) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT T ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC T ss_conf 77899999999999868988848878678999973110045343246654999999997314341623689877787728 Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCC--- Q ss_conf 4885001788854223147537889998998613--34189812379997188289999756634999899753578--- Q gi|254780191|r 82 RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT--- 156 (898) Q Consensus 82 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt--~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~--- 156 (898) +|+|||||||||||||||||||+|||.||||||| ++|+|||+|||||||++|+||+++|.+.+|+|+++|++++. T Consensus 82 ~t~rH~TfFEMlGn~SFgdyfK~eai~~awe~lt~~~~~~l~~~rl~vtv~~~D~ea~~~w~~~~gi~~~~i~~~~~~~~ 161 (441) T 3hy0_A 82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG 161 (441) T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS T ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCHHHHHHHHHCCCCCHHHEEECCCCCC T ss_conf 88862576875412144884678899999998602320020575369996636778899999727987462898676566 Q ss_pred ----CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHH Q ss_conf ----666545799999877046788538556898887-778898268960011234430478875657665310175799 Q gi|254780191|r 157 ----NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 (898) Q Consensus 157 ----~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~-~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 231 (898) +||||+||++||||||||||||+|+++.++.++ .+++|+||+||||+|||||+|+.||+|.|||+|||||||||| T Consensus 162 ~~~~~dNfW~~G~~GPcGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~dG~l~~Lp~k~IDTGmGLE 241 (441) T 3hy0_A 162 APYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241 (441) T ss_dssp BTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCHH T ss_conf 56534463215898688886689994365246899998776676135662265310003589976346765532242599 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999887985300576999999999730678543350248999998989999874033334446412577889999999 Q gi|254780191|r 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311 (898) Q Consensus 232 Rl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~ 311 (898) |++|++||++||||||+|.|||+++++++|..|.. +.|+||||||+||++|||+|||+|||+|||||||||||||+|+ T Consensus 242 Rl~~vlqg~~s~ydtD~f~~ii~~i~~~~g~~~~~--~~a~rvIaDH~Ra~~f~i~DGv~PSN~grGYvlRrliRRa~r~ 319 (441) T 3hy0_A 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS--NKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRH 319 (441) T ss_dssp HHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCTT--CHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999718996410030899999999985998666--6236654310033103453787678668740144999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE Q ss_conf 99848743310456899999864555555764678899998748989999998999999998611546424574379985 Q gi|254780191|r 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391 (898) Q Consensus 312 ~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~Ly 391 (898) +++||++.|||++|++.+++.|++.||||.++++.|.+||+.||++|.+||++|+++|++.+++.+ ++.|||++||+|| T Consensus 320 ~~~Lg~~~~~l~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~-~~~i~g~~~f~Ly 398 (441) T 3hy0_A 320 GNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLY 398 (441) T ss_dssp HHHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCC-SSEECHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHEEEE T ss_conf 998289740666534688887653495045688999999999999999999999999999998637-9947868840030 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2458888999987665077443588899999999976444331 Q gi|254780191|r 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 (898) Q Consensus 392 DTyGfP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~ 434 (898) ||||||+|||++||+|+|++ ||+++|+++|++||++||++++ T Consensus 399 DTyGfP~dlt~~ia~e~g~~-vD~~~F~~~m~~qk~~sr~ask 440 (441) T 3hy0_A 399 DTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREASG 440 (441) T ss_dssp HHHCCCHHHHHHHHHTTTCE-ECHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHCCCE-ECHHHHHHHHHHHHHHHHHHCC T ss_conf 27899999999999987891-6599999999999999897678 No 5 >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens atcc 13124} Probab=100.00 E-value=0 Score=392.33 Aligned_cols=221 Identities=23% Similarity=0.335 Sum_probs=192.8 Q ss_pred CCCEEEEEEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCC Q ss_conf 55348999974781320004797699997375200036876566514540424898522456553389985104678755 Q gi|254780191|r 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 (898) Q Consensus 487 ~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~ 566 (898) .++++|+.+..+ ++.++||||+|||||||||||+|+|+|.+ +.|.+|++. +|.++|.+ ++.+. T Consensus 15 ~~~a~V~~v~~~---------~~~~~vild~TiFyp~gGGQp~D~G~i~~----~~V~~v~~~-~g~i~H~~---~~~~~ 77 (241) T 3kew_A 15 EFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHVL---EKEPK 77 (241) T ss_dssp EEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEETT----EEEEEEEEE-TTEEEEEE---SSCCC T ss_pred EEEEEEEEEEEC---------CCEEEEEEECCCCEECCCCCCCCCEEEEE----EEEEEEEEE-CCEEEEEE---CCCCC T ss_conf 789999999952---------99089999588514188997884214736----899999988-99999986---55778 Q ss_pred CCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 67338884212556777520136889999975212544444553002430000024767899999999999998988730 Q gi|254780191|r 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 (898) Q Consensus 567 ~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n 646 (898) .|++|.++|||+||..+|++|||+|||++|+++++|.++ .|+.+.++++|+||+ ..+++++|.+||+.+|++|++| T Consensus 78 ~g~~v~~~ID~~~R~~~~~~HTA~Hll~~al~~~~g~~~--~g~~~~~~~~~id~~--~~~~~e~l~~ie~~~n~iI~~~ 153 (241) T 3kew_A 78 KLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEISTVDIV--GFLDEKTIREAEKEANRLIFEN 153 (241) T ss_dssp CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHHHHHHT T ss_pred CCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHC T ss_conf 652599999478823366546588998764443058511--145578533454555--6688778888899999999868 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEE Q ss_conf 45304661232221000355443155562489984476778553101562225886460110011012126882899997 Q gi|254780191|r 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 (898) Q Consensus 647 ~~V~~~~~~~~eA~~~ga~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeav 726 (898) +||++.+++.+||++.+....+ .++++.||||+|++ +|.++||||||.||+|||.|+|++.++. +|.+||+|+ T Consensus 154 ~~v~~~~~~~~e~~~~~~~~~~-~~~~~~iRvV~Ig~-----~d~~pCgGTHV~~T~eIg~~~I~~~~~~-~~~~RI~~~ 226 (241) T 3kew_A 154 LEVKSYAPSKKELKKVKTRRAL-PKTDEEIRIVEIVG-----LDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYV 226 (241) T ss_dssp CBEEEECCCTTTTTTCCCSSCC-CCCSSCCCEEEETT-----TEEEECCSCCCSBSGGGCCEEEEEEEEE-TTEEEEEEE T ss_pred CCCCEEEEEHHHHHHHHHHCCC-CCCCCCEEEEEECC-----EEECCCCCCCCCCHHHCCCEEEEEEEEC-CCEEEEEEE T ss_conf 9865898520123334442147-65689658999898-----5851899987787723067899999962-995999999 Q ss_pred ECHHHHHHH Q ss_conf 168999999 Q gi|254780191|r 727 TGQRARSHL 735 (898) Q Consensus 727 tG~~A~~~~ 735 (898) ||++|++.- T Consensus 227 aG~~Ai~~~ 235 (241) T 3kew_A 227 AGNRAVSEG 235 (241) T ss_dssp EGGGGC--- T ss_pred ECHHHHHHC T ss_conf 878998506 No 6 >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Probab=100.00 E-value=0 Score=379.13 Aligned_cols=185 Identities=29% Similarity=0.386 Sum_probs=167.2 Q ss_pred EEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHH Q ss_conf 99973752000368765665145404248985224565533899851046787556733888421255677752013688 Q gi|254780191|r 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 (898) Q Consensus 512 ~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatH 591 (898) .|+||+|||||||||||+|+|+|.+ ..|+++.+..+|.++|.+.. .+.+.+|++|.++|||+||+.+|++|||+| T Consensus 29 ~vvld~TiFypegGGQp~D~G~I~~----~~~~~~~~~~~g~i~H~~~~-~~~~~~G~~V~~~iD~~~R~~~~~~HTa~H 103 (216) T 2e1b_A 29 AILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLH 103 (216) T ss_dssp CCCBSCCCSCCCCTTCCCCCEEETT----EEEEEEECCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEEE----EEEEEEEECCCCEEEEEECC-CCCCCCCCEEEEEECHHHHHHHHHHCHHHH T ss_conf 8999588656886996896478945----69999997489739985424-799898999999999899787987686989 Q ss_pred HHHHHHHHCCCCCCCC-CCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH Q ss_conf 9999975212544444-553002430000024767899999999999998988730453046612322210003554431 Q gi|254780191|r 592 LLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 (898) Q Consensus 592 lL~~alr~vLG~hv~Q-~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~alfge 670 (898) ||++|+++++|.+++| .||.+.++++||||+++..++++ ..+||..+|++|.++.||.+.+ T Consensus 104 ll~~a~~~~~g~~~~~~~g~~~~~~~~~~d~~~~~~l~~~-~~~ie~~~n~~I~~~~~v~~~~----------------- 165 (216) T 2e1b_A 104 LLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNKYVDEGGEVKIWW----------------- 165 (216) T ss_dssp HHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHHHHHHCCBEEEEE----------------- T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHH-HHHHHHHHHHHHCCCCEEEEEE----------------- T ss_conf 8888878644887631146651344442116403368589-9999999987531484688985----------------- Q ss_pred CCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEE Q ss_conf 55562489984476778553101562225886460110011012126882899997 Q gi|254780191|r 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 (898) Q Consensus 671 kygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeav 726 (898) .+.+|+|+|++ ++.++||||||+||+|||.|+|++.+++++|+||||+. T Consensus 166 --~~~~Rvv~I~~-----~~~~~CgGTHV~~T~eIg~i~I~~~~~~~kg~~Rie~~ 214 (216) T 2e1b_A 166 --EGDRRYTQIRD-----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214 (216) T ss_dssp --SSSCEEEEETT-----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE T ss_pred --CCCEEEEEECC-----EEEEECCCCCCCCHHHCCCEEEEEEEEEECCCEEEEEE T ss_conf --49768888898-----89870388056868754388999998693894889999 No 7 >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A Probab=99.96 E-value=2e-28 Score=239.77 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=126.1 Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 7775201368899999752125444445-530024300000247678999999999999989887304530466123222 Q gi|254780191|r 581 RQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 (898) Q Consensus 581 ~~~~~~HTatHlL~~alr~vLG~hv~Q~-GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA 659 (898) ...||+|||+|||++|++++||.++.|. |+.+++++.|+||++..++++|+|.+||+.+|++|++|+||++.++++++| T Consensus 3 ~~~mR~HTa~Hll~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~iE~~~n~~I~~~~~V~~~~~~~eea 82 (157) T 1v4p_A 3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH T ss_conf 63388899999999999998485760453010347750799866888887799999999999998478743897389999 Q ss_pred CCCHHHHHH-HHCCCC---CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC-CCCCCCEEEEEEECH Q ss_conf 100035544-315556---2489984476778553101562225886460110011012-126882899997168 Q gi|254780191|r 660 IASGAAALL-GTKYND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAITGQ 729 (898) Q Consensus 660 ~~~ga~alf-gekygd---~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~-si~sGvRRIeavtG~ 729 (898) .+.....++ ...+++ .||||.|++ |++++||||||.|||+||.|+|++.+ +.++|++||+|-.++ T Consensus 83 ~~~~~~~~~~~~~~~~~~~~iRiv~i~~-----~d~~~CgGTHV~~T~eIg~ikI~~~~~~~~kg~~Ri~f~l~~ 152 (157) T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIED-----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157) T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT-----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC- T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCC-----EEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCEEEEEEECC T ss_conf 9751722221002455566316872388-----479799998759785663199989854321784899999627 No 8 >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Probab=99.89 E-value=4.6e-22 Score=189.94 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=140.3 Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCEEEEEE Q ss_conf 168999999999999999999839998899999999999999999999999999876365-----355536952799995 Q gi|254780191|r 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII 801 (898) Q Consensus 727 tG~~A~~~~~~~~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~-----~~~~i~~~~~i~~~~ 801 (898) .|.+|++|+++.++.++++++.|++++++++++|++|+++++++++++.+++.+...... .+..+++++++... T Consensus 1 ~G~~A~~~~~~~~~~l~~is~~L~~~~~~l~~~i~~l~~e~k~l~k~~~~l~~~~~~~~~~~l~~~~~~i~~~~vv~~~- 79 (171) T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEV- 79 (171) T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEE- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEEE- T ss_conf 9279999999999999999999798989999999999999999999999999999999877776461677899888610- Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC Q ss_conf 79997899999999997549978999995389817999986778972679899999999883499999981011458999 Q gi|254780191|r 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 (898) Q Consensus 802 ~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgGG~~ 881 (898) .+.|+++||.+++.++++ ..+++|++ ..++++.+++.+++ +++|++|++.+++.+ ||+|||||+||||||++ T Consensus 80 ~~~d~~~lr~l~~~l~~~--~~~~vl~~-~~~~k~~v~~~~~~----~i~A~~ivk~~~~~~-~GkGGG~~~~AQggg~~ 151 (171) T 2zvf_A 80 VDADMQALQKLAERLAEK--GAVGCLMA-KGEGKVFVVTFSGQ----KYDARELLREIGRVA-KGSGGGRKDVAQGAVQQ 151 (171) T ss_dssp CSCCHHHHHHHHHHHHHT--TEEEEEEE-ECSSSEEEEEEESS----SSCHHHHHHHHHHHH-TEECCBCSSEEEEEESS T ss_pred CCCCHHHHHHHHHHHHCC--CCEEEEEE-CCCCCEEEEECCCC----CCCHHHHHHHHHHHC-CCCCCCCHHHEEECCCC T ss_conf 589989999999998444--77389774-26885257750667----778999999999873-99878966870347998 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 87889999999998619 Q gi|254780191|r 882 GNKADQAIAGVASFLKK 898 (898) Q Consensus 882 ~~~l~eal~~vk~~Lke 898 (898) +++++++++.++++|++ T Consensus 152 ~~~~~~~l~~~~~~l~~ 168 (171) T 2zvf_A 152 LLDREEMLDVIFRFLSE 168 (171) T ss_dssp CCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 67899999999999987 No 9 >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Probab=99.76 E-value=1.3e-18 Score=163.00 Aligned_cols=109 Identities=28% Similarity=0.520 Sum_probs=101.1 Q ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 35553695279999579997899999999997549978999995389817999986778972679899999999883499 Q gi|254780191|r 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 (898) Q Consensus 787 ~~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GG 866 (898) ..+++++++++...+++.|+++||.+++.++++.++.+++|++. .++|+.+++++++++.++++|++|++++++.+ || T Consensus 2 k~e~ig~~~~i~~~~~~~d~~~Lr~l~d~l~~~~~~~vvil~s~-~~~k~~iv~~vs~~~~~~~~A~~lvk~~~~~i-gG 79 (111) T 3g98_A 2 KEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEISDKVNAKEVIREVGKVL-KG 79 (111) T ss_dssp EEEEETTEEEEEEEEESCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGGTTTSCHHHHHHHHHHHT-TB T ss_pred CEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCEEEEEEECHHHHCCCCHHHHHHHHHHHH-CC T ss_conf 50898899999999769998999999999985349849999994-29947999998557626764999999999982-97 Q ss_pred CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 9999810114589998788999999999861 Q gi|254780191|r 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 (898) Q Consensus 867 gGGGkpd~AQgGG~~~~~l~eal~~vk~~Lk 897 (898) +|||||+||||||++++++++||+.++++|+ T Consensus 80 ~GGGk~~~AQgGG~~~~~l~~al~~~~~~l~ 110 (111) T 3g98_A 80 GGGGRADLAQGGGKAPDKFPEAVKLLKEILS 110 (111) T ss_dssp CCEECSSEEEEEESCGGGHHHHHHHHHHHHH T ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHC T ss_conf 6568960015289987889999999999837 No 10 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Probab=99.04 E-value=6.5e-10 Score=94.79 Aligned_cols=148 Identities=23% Similarity=0.395 Sum_probs=104.4 Q ss_pred HCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH- Q ss_conf 2013688999997521254444455300243000002476789999999999999898873045304661232221000- Q gi|254780191|r 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG- 663 (898) Q Consensus 585 ~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g- 663 (898) -.||+.|||..|++++++..----|. +-.+-+-.||....++|+++|..||+.++++|.+|+|++...++.++|.+.. T Consensus 73 ~~~S~a~ll~~A~~~~~p~~~~~i~~-~~~~Gfy~d~~~~~~~t~~dl~~ie~~m~~ii~~~~~i~~~~~~~~eA~~~F~ 151 (645) T 1nyr_A 73 LRHSTAHLMAHAIKRLYGNVKFGVGP-VIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFS 151 (645) T ss_dssp HHHHHHHHHHHHHHHHSSSCEECCCC-EETTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHC T ss_conf 99999999999999977997799788-65887999983699999999999999999998658972799837999999860 Q ss_pred ----HHHHHHHCC-CCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCC-C------CCCCEEEEEEECH-- Q ss_conf ----355443155-5624899844767785531015622258864601100110121-2------6882899997168-- Q gi|254780191|r 664 ----AAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-I------RAGIRRIEAITGQ-- 729 (898) Q Consensus 664 ----a~alfgeky-gd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~s-i------~sGvRRIeavtG~-- 729 (898) -..+..+.. ++.|-+...++ | +.+|-|.||.|||.|+.||+++.++ . ..-+.||..++=+ T Consensus 152 ~~~~k~e~i~~~~~~~~v~~y~~g~-----f-~dl~~Gp~v~~t~~i~~~kl~~~~~~yw~g~~~~~~l~riyg~a~~~~ 225 (645) T 1nyr_A 152 NDEYKLELIDAIPEDENVTLYSQGD-----F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK 225 (645) T ss_dssp SCHHHHHHHCCCSSSCCCEEEEETT-----E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH T ss_pred CCHHHHHHHHHCCCCCCEEEEEECC-----E-EEECCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCEEEEEEEEECCCH T ss_conf 6715799996377998169999788-----8-885377557875322200355404453158863700378998861899 Q ss_pred -HHHHHHHHHH Q ss_conf -9999999999 Q gi|254780191|r 730 -RARSHLMGQD 739 (898) Q Consensus 730 -~A~~~~~~~~ 739 (898) ...+|+...+ T Consensus 226 ~~l~~~~~~~~ 236 (645) T 1nyr_A 226 KELKAHLQMLE 236 (645) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 11 >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Probab=98.95 E-value=2.8e-08 Score=81.92 Aligned_cols=137 Identities=20% Similarity=0.359 Sum_probs=98.2 Q ss_pred HHHCCCHHHHHHHHHHHCCCCC-CCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC Q ss_conf 7520136889999975212544-444553002430000024767899999999999998988730453046612322210 Q gi|254780191|r 583 LSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 (898) Q Consensus 583 ~~~~HTatHlL~~alr~vLG~h-v~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~ 661 (898) -.-.||+.|||.+|++++++.. +. -| +.-.+-+-.||....+++++++..||+.+.++|.+|+|+....++.++|.+ T Consensus 69 ~iy~rS~a~lL~~Av~~l~p~~~l~-~~-~si~~gfy~d~~~~~~~~~edl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~ 146 (224) T 1tke_A 69 EIIRHSCAHLLGHAIKQLWPHTKMA-IG-PVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARE 146 (224) T ss_dssp HHHHHHHHHHHHHHHHHHSTTCEEC-CC-CEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEE-EC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH T ss_conf 9999999999999999858995663-37-867884489605567889899999999999998728982599972999999 Q ss_pred CHH-------HHHHHHC--CCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCC-C----CCC--CEEEEE Q ss_conf 003-------5544315--55624899844767785531015622258864601100110121-2----688--289999 Q gi|254780191|r 662 SGA-------AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-I----RAG--IRRIEA 725 (898) Q Consensus 662 ~ga-------~alfgek--ygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~s-i----~sG--vRRIea 725 (898) ... ..++.+. ..+.|-+-..|+ =..+|-|.||.|||.|+.|++++.++ . ++. ..||.. T Consensus 147 ~f~~~~~~~K~~ll~~~~~~~~~v~~Y~~g~------~~D~~~Gp~vpsTg~ik~F~L~~~sgayw~gd~~n~~LqRiyG 220 (224) T 1tke_A 147 TFANRGESYKVSILDENIAHDDKPGLYFHEE------YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220 (224) T ss_dssp HHHHTTCHHHHHHHHHHSCTTCCCEEEEETT------EEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEE T ss_pred HHHHCCCHHHHHHHHHHCCCCCCEEEEECCC------EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEE T ss_conf 9987335078899875255677435896798------8997488756877876258973783054679987811078999 Q ss_pred EE Q ss_conf 71 Q gi|254780191|r 726 IT 727 (898) Q Consensus 726 vt 727 (898) +| T Consensus 221 ~a 222 (224) T 1tke_A 221 TA 222 (224) T ss_dssp EE T ss_pred EE T ss_conf 97 No 12 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Probab=98.92 E-value=1.9e-08 Score=83.26 Aligned_cols=137 Identities=20% Similarity=0.368 Sum_probs=94.9 Q ss_pred HCCCHHHHHHHHHHHCCCC-CCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH Q ss_conf 2013688999997521254-444455300243000002476789999999999999898873045304661232221000 Q gi|254780191|r 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 (898) Q Consensus 585 ~~HTatHlL~~alr~vLG~-hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g 663 (898) -.||+.|||.+|+.++++. ++.- |-.++ +-+=.||.-..++|+++|.+||+.++++|.+|+|+....++.++|.+.. T Consensus 71 ~~~S~a~vl~~Av~~l~p~~kl~i-gp~i~-~Gfyyd~~~~~~~t~~dl~~Ie~~M~~ii~~~~~i~r~~~~~~~A~~~f 148 (642) T 1qf6_A 71 IRHSCAHLLGHAIKQLWPHTKMAI-GPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF 148 (642) T ss_dssp HHHHHHHHHHHHHHHHCTTCEECC-CCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE-CCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH T ss_conf 999999999999999769987997-78658-8789997149999999999999999999732586279997578999987 Q ss_pred H-------HHHHHHC--CCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC-------CCCCEEEEEEE Q ss_conf 3-------5544315--556248998447677855310156222588646011001101212-------68828999971 Q gi|254780191|r 664 A-------AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727 (898) Q Consensus 664 a-------~alfgek--ygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si-------~sGvRRIeavt 727 (898) . ..+..+. ..+.|-+-..++ | +.+|-|.||.|||.|+.||+++.++- ..-..||..++ T Consensus 149 ~~~~~~~k~~li~~~~~~~~~i~~y~~g~-----f-~Dlc~Gphvp~T~~ik~fkL~~~~~ayw~gd~~~~~l~Riyg~a 222 (642) T 1qf6_A 149 ANRGESYKVSILDENIAHDDKPGLYFHEE-----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (642) T ss_dssp HHHTCHHHHHHHHHHSCTTCCCEEEEETT-----E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEE T ss_pred HHCCCCHHHHHHHCCCCCCCCEEEEECCC-----E-EEECCCCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHH T ss_conf 63135045666530356676337996287-----7-98448877898766621467531312765887236767677664 Q ss_pred CH Q ss_conf 68 Q gi|254780191|r 728 GQ 729 (898) Q Consensus 728 G~ 729 (898) =. T Consensus 223 f~ 224 (642) T 1qf6_A 223 WA 224 (642) T ss_dssp CS T ss_pred HC T ss_conf 16 No 13 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Probab=98.20 E-value=3e-05 Score=58.25 Aligned_cols=172 Identities=23% Similarity=0.331 Sum_probs=101.4 Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH--- Q ss_conf 787899999999999789889116675667787100230143475540-0588799999851115432248987863--- Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL--- 77 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl--- 77 (898) |+..+|-.+--+|+.++|+.++.++.+= +.|| .|-|. |+..--|.--+++-+|||.|- .|= T Consensus 13 m~fq~~i~~L~~fW~~~GC~i~qpyd~e---------vGAg--T~~P~T~lr~lgp~pw~~aYvqPsrRP----~DgRYG 77 (298) T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGAG--TFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYG 77 (298) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSSG--GGSHHHHTGGGCSSCEEEEEEEEEECC----C----- T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCC----CCCCCC T ss_conf 2299999999999987796887675542---------4646--688899986319876326642467799----988767 Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCC-HHHEEECCC Q ss_conf 4346488500178885422314753788999899861334189812379997188289999756634999-899753578 Q gi|254780191|r 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLS-ADKIIRITT 156 (898) Q Consensus 78 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~-~~~i~~~~~ 156 (898) +|--+ -.||.=|.-+=-=|..+ =+|-|--=++.+||. .+|=++|- T Consensus 78 eNPNR-Lq~y~QfQVilKPsp~n--------------------------------~q~lYL~SL~~igid~~~hDIrFv- 123 (298) T 1j5w_A 78 ENPNR-LQRYFQYQVIIKPSPEN--------------------------------SQELYLESLEYLGINLKEHDIRFV- 123 (298) T ss_dssp CCTTC-CSEEEEEEEEEESCCSS--------------------------------HHHHHHHHHHHTTCCTTTSCEEEE- T ss_pred CCCCH-HCEEEEEEEEECCCCHH--------------------------------HHHHHHHHHHHHCCCCCCCCEEEE- T ss_conf 89323-11003458997789466--------------------------------899999999983999202144786- Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 66654579999987704678853855689888777889826896001123443047887565766531017579999999 Q gi|254780191|r 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 (898) Q Consensus 157 ~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~v 236 (898) +|| |+----|.-|--=||-.| ++||--.-..| +-.| .++.--.+.--|||||||+. T Consensus 124 eDn-WEsPtLGAwGlGWEVwld------------------GMEItQFTYFQ---QvGG--i~c~pv~~EiTYGLERiaMy 179 (298) T 1j5w_A 124 EDN-WESPTLGAWGVGWEVWLD------------------GMEITQFTYFQ---QIGG--ISLKDIPLEITYGLERIAMY 179 (298) T ss_dssp EEC-CEEGGGTEEEEEEEEEET------------------TEEEEEEEEEE---EBTT--BCCSSCCEEEEEEHHHHHHH T ss_pred ECC-CCCCCCCCEEEEEEEEEC------------------CEEEEEEEEEE---EECC--EECCCCCHHHHHHHHHHHHH T ss_conf 227-778761211200599988------------------76875244031---1277--53344220100249999999 Q ss_pred HCCCCCCCHH Q ss_conf 8879853005 Q gi|254780191|r 237 LQEKTNNYDI 246 (898) Q Consensus 237 lqg~~s~ydt 246 (898) +|++.++||+ T Consensus 180 lQ~vdnv~Dl 189 (298) T 1j5w_A 180 LQGVDNVYEV 189 (298) T ss_dssp HHTCSSGGGC T ss_pred HHCCCHHHCC T ss_conf 8487335030 No 14 >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Probab=93.77 E-value=0.089 Score=31.05 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=98.7 Q ss_pred HHHHHHHHHHHHHHCCCEECCCCCC-----------CCCCCC-----CHHEEECCCC------CCCC-CCCCCCCCCCCC Q ss_conf 7899999999999789889116675-----------667787-----1002301434------7554-005887999998 Q gi|254780191|r 4 VSSIRTTFLEFFQKNGHELLPSSSL-----------IPCNDP-----TLMFTNSGMV------PFKN-IFTGQEKPVYQA 60 (898) Q Consensus 4 ~~eiR~~fl~fF~~~~H~~~~s~sl-----------vp~~d~-----~llft~Agm~------~fk~-~f~G~~~p~~~r 60 (898) ++++++...++|.+.|-+++...-+ +|.+.| +.++++..+. +.+. ++.....+|-.| T Consensus 55 l~~~~~~I~~if~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~~~~~~p~~ 134 (294) T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVK 134 (294) T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEE T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEE T ss_conf 99999999999977897164588410430576634889983020404518850352037768077899998515689838 Q ss_pred CCCCCCCEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCC-HHHEEEEECCCHHHHHH Q ss_conf 5111543224898786343464885001788854223147537-889998998613341898-12379997188289999 Q gi|254780191|r 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK-ERAIQLAWDLLTKEFDLD-QRRLYITVYDEDEEAFK 138 (898) Q Consensus 61 ~~~~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK-~eai~~awe~lt~~~~l~-~~~l~vtv~~~D~e~~~ 138 (898) +..+=+|.| +|= .++.|.-.|-++--+-.+.--. .+-....-.|+.+.++=+ .-|+--+|| T Consensus 135 ~~~~G~VyR-----rD~----iDatH~p~FhQ~Eg~~v~~~~~~~~Lk~~l~~f~~~~f~~~~~~r~rpsyF-------- 197 (294) T 2rhq_A 135 IICPGKVYR-----RDS----DDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYF-------- 197 (294) T ss_dssp EEEEEEEEC-----CCC----CBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHCTTCCEEEEECCB-------- T ss_pred EEECCCEEE-----CCC----CCHHHCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC-------- T ss_conf 984684772-----687----873442222230159964787776644378899998706774589744658-------- Q ss_pred HHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CCCCCCEEEEEEHHHHHHHCCCCCCCC Q ss_conf 7566349998997535786665457999998770467885385568988877-788982689600112344304788756 Q gi|254780191|r 139 LWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERF 217 (898) Q Consensus 139 iW~~~~gi~~~~i~~~~~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~-~~~~~r~lEiwNlVFmq~~~~~~g~~~ 217 (898) .--=|..|+.+... .|...+| -+....++||+..=-..=+-.....+- T Consensus 198 ----------------------------PfTePs~Evdv~~~---~~~g~~~~v~~~~~WlEi~G~Gmv~P~VL~~~Gid 246 (294) T 2rhq_A 198 ----------------------------PFTEPSVEVDVSCF---KCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFD 246 (294) T ss_dssp ----------------------------TTEEEEEEEEEECS---SSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCC T ss_pred ----------------------------CCCCCCCEEEEEEE---CCCCCCCEECCCCCCEEEEEECCCCHHHHHHCCCC T ss_conf ----------------------------54588622677762---04898741405887468863034278999972999 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 5766531017579999999887985300576999999999730678 Q gi|254780191|r 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263 (898) Q Consensus 218 ~Lp~~~IDTGmGLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~ 263 (898) |=.....--||||||||+++-|.+..=+ +|..=+..+++.-+++ T Consensus 247 ~~~~~G~AfGlGlERlAMl~~gI~DIR~--f~~~D~rfl~Qf~~~~ 290 (294) T 2rhq_A 247 SNEYSGFAFGMGPDRIAMLKYGIEDIRY--FYTNDVRFLEQFKAVE 290 (294) T ss_dssp TTTCEEEEEEECHHHHHHHHHTCCCTTH--HHHCCHHHHTTCCSCC T ss_pred CCCCEEEEEEECHHHHHHHHCCCCHHHH--HHHCCHHHHHHCCCCC T ss_conf 6778799986338899999839975887--7626888998562532 No 15 >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Probab=93.15 E-value=0.19 Score=28.53 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=54.5 Q ss_pred HHHHHHHHHHHHHHCCCEECCCCCCC----------CCCCCCHH--EEECCCCCCCCCC-----------CCCCCCCCCC Q ss_conf 78999999999997898891166756----------67787100--2301434755400-----------5887999998 Q gi|254780191|r 4 VSSIRTTFLEFFQKNGHELLPSSSLI----------PCNDPTLM--FTNSGMVPFKNIF-----------TGQEKPVYQA 60 (898) Q Consensus 4 ~~eiR~~fl~fF~~~~H~~~~s~slv----------p~~d~~ll--ft~Agm~~fk~~f-----------~G~~~p~~~r 60 (898) .++|.+...+||.++|...|..-.++ |.++|--. |..-+-..++|.. .+..++| .| T Consensus 73 ~~~l~~~ir~~~~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~~~~~~~~p-~r 151 (288) T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKP-IR 151 (288) T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSC-EE T ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHHHHCCCCC-EE T ss_conf 99999999999998879899875265221553457654433022047637420134357717889999863014798-48 Q ss_pred CCCCCCCEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHCC-CC--HHHHHHHHHHHH Q ss_conf 5111543224898786343464885001788854223147-53--788999899861 Q gi|254780191|r 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YF--KERAIQLAWDLL 114 (898) Q Consensus 61 ~~~~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn~Sfgd-Yf--K~eai~~awe~l 114 (898) +..+-+|.|. + ..| .+|.--|-|++=+.+|. .- -.+.+.++-++| T Consensus 152 ~~~ig~vfR~-----E--~~~--~~h~~eFtQ~e~~~~~~~~~~~~~~l~~l~~~~l 199 (288) T 3dsq_A 152 IFEIGTCYRK-----E--SQG--AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVL 199 (288) T ss_dssp EEEEEEEECS-----C--CSS--SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHH T ss_pred EEEECEEECC-----C--CCC--CCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHH T ss_conf 9996625556-----8--688--8867827773158986988999999999999999 No 16 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Probab=92.24 E-value=0.31 Score=26.84 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCC-CC---CCCCHHEEECCCCCCC------CCCCCCCC---------CCCCCCCCCC Q ss_conf 8999999999997898891166756-67---7871002301434755------40058879---------9999851115 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLI-PC---NDPTLMFTNSGMVPFK------NIFTGQEK---------PVYQAVTTVQ 65 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slv-p~---~d~~llft~Agm~~fk------~~f~G~~~---------p~~~r~~~~Q 65 (898) ++|-+.+-+||.++|-.-|. -|++ |. .++. ....|.++|+ +++|-+.+ ....|+=..- T Consensus 19 s~i~~~iR~ff~~~~f~EV~-tPil~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~Spql~~k~~l~~g~~~vf~I~ 95 (294) T 1nnh_A 19 TKILEYMTDFFVKEGFKWLL-PVIISPITDPLWPD--PAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 95 (294) T ss_dssp HHHHHHHHHHHHHTTCEEEC-CCCEESCCCCCCSC--TTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999988999984-87345667776776--5567663563567896675157888889899873025644650 Q ss_pred CCEECCCCCCCHHHCCCCCCCHHHHHHHH-HHHHCCCC Q ss_conf 43224898786343464885001788854-22314753 Q gi|254780191|r 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLG-NFSFGGYF 102 (898) Q Consensus 66 kCiR~ggkhnDld~VG~t~rH~TfFEMlG-n~SfgdYf 102 (898) ||.|+. +.+. .|.||.+=|-||= =.+|.||. T Consensus 96 ~~FR~E----~~~~--~~~rH~~EFtmLE~e~~~~d~~ 127 (294) T 1nnh_A 96 PNIRLE----SRQK--DDGRHAYEFTQLDFEVERAKME 127 (294) T ss_dssp EEECCC----CGGG--CSSSCCSEEEEEEEEEETCCHH T ss_pred CEECCC----CCCC--CCCCCCCCCCCCEEEEECCHHH T ss_conf 456478----7888--8775540014650598400198 No 17 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Probab=91.74 E-value=0.11 Score=30.24 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=51.8 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCC------------CCCCCCCC---------CCCCCCCC Q ss_conf 8999999999997898891166756677871002301434755------------40058879---------99998511 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK------------NIFTGQEK---------PVYQAVTT 63 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk------------~~f~G~~~---------p~~~r~~~ 63 (898) ++|-+..-+||.++|-.-|..--|++...+ .|...+|+ +.+|-+.+ ....|+-. T Consensus 40 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~-----ga~~~pf~~~~~~~~~~~~~~~yL~~SpQl~lq~l~~~g~~rVf~ 114 (345) T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVT-----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ 114 (345) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCC-----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCC-----CCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEE T ss_conf 999999999998889789879864788987-----645661688723666667857775548799999999679987279 Q ss_pred CCCCEECCCCCCCHHHCCCCCCCHHHHHHHHH-HHHCCCCHHHHHHHHHHHHH Q ss_conf 15432248987863434648850017888542-23147537889998998613 Q gi|254780191|r 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN-FSFGGYFKERAIQLAWDLLT 115 (898) Q Consensus 64 ~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt 115 (898) .-||.|+. + .+.||++=|-||== .+|.|| ++.+...=+++. T Consensus 115 I~p~FR~E----~-----~~~~H~~EFtmlE~e~a~~d~--~dlm~~~E~li~ 156 (345) T 3a5y_A 115 LCRSFRNE----E-----MGRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQ 156 (345) T ss_dssp EEEEECCC----C-----CBTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHH T ss_pred EECCCCCC----C-----CCCCCCCCEEEEEEEECCCCH--HHHHHHHHHHHH T ss_conf 83453269----9-----898857634553443247999--999999999999 No 18 >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Probab=91.45 E-value=0.084 Score=31.23 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.2 Q ss_pred HHHHCCCHHH Q ss_conf 7752013688 Q gi|254780191|r 582 QLSINHSATH 591 (898) Q Consensus 582 ~~~~~HTatH 591 (898) .+.+.||..| T Consensus 322 ~vLRtHtt~~ 331 (508) T 3l4g_A 322 NLLRTHTTSA 331 (508) T ss_dssp EEECCCTHHH T ss_pred CCCCCCCCCH T ss_conf 3445788721 No 19 >2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Probab=88.02 E-value=1.2 Score=22.26 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCC Q ss_conf 89999999999978988911667566 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIP 30 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp 30 (898) ++|.+..-+||.++|-..|..-.+.+ T Consensus 81 ~~i~~~ir~~f~~~Gf~EV~TP~l~~ 106 (291) T 2zin_A 81 GKLEREITRFFVDRGFLEIKSPILIP 106 (291) T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEE T ss_pred HHHHHHHHHHHHHCCCEEEECCCEEE T ss_conf 99999999999988799997652233 No 20 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Probab=87.71 E-value=0.5 Score=25.16 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=13.8 Q ss_pred HHCCCCCEEEEEECCCCCCCCCEECCCCC Q ss_conf 31555624899844767785531015622 Q gi|254780191|r 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 (898) Q Consensus 669 gekygd~VRVV~I~~~d~~~~S~ElCGGT 697 (898) |+-+|-.|+|.-++...+ .-|||.. T Consensus 405 g~~~~~~~~v~~~e~ee~----~~l~gpa 429 (534) T 2du3_A 405 GEMMGRNVRVYVVEEEEN----TKLCGPA 429 (534) T ss_dssp EESSSSEEEEEEEECSSS----SBSSCTT T ss_pred EEEECEEEEEEEECCCCC----CCCCCHH T ss_conf 065140689999656678----7665825 No 21 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=85.34 E-value=1 Score=22.81 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=35.3 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 7704678853855689888777889826896001------1234430478875657665310175799999998879853 Q gi|254780191|r 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 (898) Q Consensus 170 GPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~ 243 (898) |.|.+|+.+.. ...+++||... |.-.|. ++.+..=-||||||||++.-|.+.. T Consensus 296 g~ea~V~~~~~------------~~~~WlEIgg~G~vHP~VLk~~G---------Id~~V~AFGLGLERLAMlk~gi~DI 354 (648) T 2odr_B 296 ETQTEVYAYHP------------KLKEWLEVATFGVYSPVALSKYG---------IDVPVMNLGLGVERLAMISGNFADV 354 (648) T ss_dssp TCCEEEEEEET------------TTTEEEEEEEEEEBCHHHHHHTT---------CCSCEEEEEEEHHHHHHHHTTCSCH T ss_pred CEEEEEEEEEC------------CCCEEEEEEECCCCCHHHHHHCC---------CCCCEEEEEECHHHHHHHHCCCCHH T ss_conf 11589999816------------79848999806531799998669---------6985799996389999987399737 No 22 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=85.19 E-value=1 Score=22.72 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=36.4 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 7704678853855689888777889826896001------1234430478875657665310175799999998879853 Q gi|254780191|r 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 (898) Q Consensus 170 GPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~ 243 (898) |.+.+|+.+.. ...+++||... |.-.|. ++.+..=-||||||||++.-|.+.. T Consensus 296 g~eaeV~~~~~------------k~~~WlEIgg~G~vhP~VLk~~G---------Id~~V~AFGLGLERLAMlk~gI~DI 354 (665) T 2odr_A 296 ETQTEVYAYHP------------KLKEWLEVATFGVYSPVALSKYG---------IDVPVMNLGLGVERLAMISGNFADV 354 (665) T ss_dssp TCCEEEEEEET------------TTTEEEEEEEEEEBCHHHHHHTT---------CCSCEEEEEEEHHHHHHHHTTCSCH T ss_pred CEEEEEEEEEC------------CCCEEEEEEECCCCCHHHHHHCC---------CCCCEEEEEECHHHHHHHHCCCCHH T ss_conf 40589999945------------69839999924430799998769---------7985799997589999987399768 No 23 >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Probab=83.95 E-value=0.43 Score=25.64 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=8.3 Q ss_pred HCCCHHHHHHHHHHHCC Q ss_conf 20136889999975212 Q gi|254780191|r 585 INHSATHLLHHALSTIL 601 (898) Q Consensus 585 ~~HTatHlL~~alr~vL 601 (898) .+.-..|.+-.++|+.| T Consensus 172 ~~~~~Rs~i~~~iR~fl 188 (493) T 3a74_A 172 KTFITRSLIIQSMRRYL 188 (493) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 24 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=81.52 E-value=1.8 Score=20.86 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=20.1 Q ss_pred HHHEECCCCCCCCCEEEEEEECHHHHHH Q ss_conf 1001101212688289999716899999 Q gi|254780191|r 707 LLYIVSESSIRAGIRRIEAITGQRARSH 734 (898) Q Consensus 707 ~fkIise~si~sGvRRIeavtG~~A~~~ 734 (898) .++=..++++..|||=|+|++-..|.+- T Consensus 471 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 498 (685) T 2odr_D 471 FLEKGKSEGVATGIRYIDALCFKITSKL 498 (685) T ss_dssp ---------------------------- T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 9998875597658275999999999999 No 25 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=81.50 E-value=1.7 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=17.3 Q ss_pred HHEECCCCCCCCCEEEEEEECHHHHHH Q ss_conf 001101212688289999716899999 Q gi|254780191|r 708 LYIVSESSIRAGIRRIEAITGQRARSH 734 (898) Q Consensus 708 fkIise~si~sGvRRIeavtG~~A~~~ 734 (898) ++=..++++..|||=|+|++-..|.+- T Consensus 472 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 498 (701) T 2odr_C 472 LEKGKSEGVATGIRYIDALCFKITSKL 498 (701) T ss_dssp --------------------------- T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 998875497658275999999999999 No 26 >2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A* Probab=80.75 E-value=1.6 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 3788999899861334189812379997188 Q gi|254780191|r 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 102 fK~eai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) =+++.+.--.++|.+.||+|++|+||+++.- T Consensus 72 ~n~~~s~~i~~~l~~~LgI~~~RiyI~f~~~ 102 (125) T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRDC 102 (125) T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC- T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC T ss_conf 7899999999999997198902289999978 No 27 >3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Probab=79.90 E-value=1.7 Score=20.93 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 378899989986133418981237999718 Q gi|254780191|r 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 102 fK~eai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) =+++-..-..+||.+.||+|++|+||++++ T Consensus 93 ~n~~~s~~i~~~l~~~LgIp~~RiyI~f~d 122 (133) T 3fwu_A 93 EPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133) T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 999999999999999739896739999980 No 28 >3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} Probab=79.62 E-value=1.7 Score=21.00 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHEEEEEC Q ss_conf 37889998998613341898123799971 Q gi|254780191|r 102 FKERAIQLAWDLLTKEFDLDQRRLYITVY 130 (898) Q Consensus 102 fK~eai~~awe~lt~~~~l~~~~l~vtv~ 130 (898) -+++-..--.+||.+.||+|++|+||++. T Consensus 93 ~n~~~s~~i~~~l~~~LgIp~~RiYI~f~ 121 (133) T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYY 121 (133) T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 89999999999999973989684999998 No 29 >3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Probab=79.23 E-value=1.9 Score=20.66 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 8899989986133418981237999718 Q gi|254780191|r 104 ERAIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 104 ~eai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) ++...--.+||.+.||+|++|+|++++. T Consensus 74 ~~~s~~i~~~l~~~LgI~~~RiyI~f~d 101 (112) T 3b64_A 74 EKVTSIVTAAITKECGIVADRIFVLYFS 101 (112) T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEEC T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 9999999999999859796739999982 No 30 >2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode, hookworm; 1.60A {Ancylostoma ceylanicum} Probab=78.22 E-value=1.8 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHEEEEECCCH Q ss_conf 889998998613341898123799971882 Q gi|254780191|r 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDED 133 (898) Q Consensus 104 ~eai~~awe~lt~~~~l~~~~l~vtv~~~D 133 (898) ++-+.-..++|.+.||+|++|.|+++++-+ T Consensus 74 ~~~s~~i~~~l~~~Lgi~~~riyI~f~~~~ 103 (119) T 2os5_A 74 IRHTQKITQFCQDTLKLPKDKVIITYFDLQ 103 (119) T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEEECC T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 999999999999973979575999999789 No 31 >2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Probab=77.68 E-value=2.1 Score=20.26 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 78899989986133418981237999718 Q gi|254780191|r 103 KERAIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 103 K~eai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) +++-+.--.+++.+.||++++|+||++++ T Consensus 73 n~~~~~~i~~~l~~~Lgi~~~riyi~f~~ 101 (115) T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115) T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 89999999999999849595769999998 No 32 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Probab=76.91 E-value=0.92 Score=23.09 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=26.7 Q ss_pred CEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH Q ss_conf 26896001------123443047887565766531017579999999887985300 Q gi|254780191|r 196 RYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 (898) Q Consensus 196 r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~yd 245 (898) .+|||... |+-.+.- +.+..--||||||||+++-|.+..=+ T Consensus 303 ~WlEIlGcGmv~P~VL~~~Gi---------d~~g~AfGlGlERLAMl~ygI~DIR~ 349 (549) T 2du7_A 303 EWIEVATFGVYSPIALAKYNI---------DVPVMNLGLGVERLAMIIYGYEDVRA 349 (549) T ss_dssp CSEEEEEEEEBCHHHHHHTTC---------CSCEEEEEEBHHHHHHHHTTCSCSHH T ss_pred EEEEEECCCCCCHHHHHHCCC---------CCCEEEEEECHHHHHHHHCCCCHHHH T ss_conf 189995784778899985697---------98768987639999999729976776 No 33 >3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.10A {Staphylococcus haemolyticus JCSC1435} Probab=76.14 E-value=2.3 Score=20.02 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=41.3 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCC-CCCHH Q ss_conf 97899999999997549978999995389817999986778972679899999999883499999981011458-99987 Q gi|254780191|r 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG-GPNGN 883 (898) Q Consensus 805 d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgG-G~~~~ 883 (898) .+.+.-.+++.+.+-.+..+.+++. ..++++.+.+. | ++++++++++ .+ | |||-| .|-|. -+..+ T Consensus 234 ~~~~~~~iv~~l~~i~g~~v~~~~~-~~~~~v~~S~R-S----~~~dv~~ia~----~~-g--GGGH~-~AAG~~i~~~~ 299 (320) T 3dev_A 234 QPNEASQFVNTVADISGLKIWMFGV-DEGDQIRCRIR-S----KGITINDVAN----QF-G--GGGHP-NASGVSVYSWD 299 (320) T ss_dssp CHHHHTTCGGGSTTBTTCCEEEEEE-ECSSSEEEEEE-E----SSSCCHHHHH----HT-T--CEEET-TEEEEEESSHH T ss_pred CCHHHHHHHHHHCCCCCEEEEEEEE-EECCEEEEEEE-C----CCCCHHHHHH----HH-C--CCCCH-HHCEEEECCCC T ss_conf 7236789998855847659999999-98999999997-8----9979999998----81-9--96556-62488848843 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 889999999998619 Q gi|254780191|r 884 KADQAIAGVASFLKK 898 (898) Q Consensus 884 ~l~eal~~vk~~Lke 898 (898) .+++.++.+++.|.| T Consensus 300 ~~~~~~~~l~~~l~e 314 (320) T 3dev_A 300 EFEELAQALRQKLLE 314 (320) T ss_dssp HHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHH T ss_conf 399999999999876 No 34 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=75.69 E-value=3.3 Score=18.77 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=13.2 Q ss_pred HCCCCHHHHHH--HHHHHHHHHCCCCHHHEEEEECCCH Q ss_conf 14753788999--8998613341898123799971882 Q gi|254780191|r 98 FGGYFKERAIQ--LAWDLLTKEFDLDQRRLYITVYDED 133 (898) Q Consensus 98 fgdYfK~eai~--~awe~lt~~~~l~~~~l~vtv~~~D 133 (898) ||||==+-... ..+++|.. +|.+ |.||-+| T Consensus 78 ~GDYDvDGiTStaIL~~~L~~-lg~~-----v~~yIP~ 109 (666) T 2zxr_A 78 HGDYDADGLTGTAILVRGLAA-LGAD-----VHPFIPH 109 (666) T ss_dssp ECCSSHHHHHHHHHHHHHHHH-TTCE-----EEECCC- T ss_pred EEECCCCHHHHHHHHHHHHHH-CCCC-----EEEECCC T ss_conf 974684168999999999998-8996-----5998889 No 35 >3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} Probab=75.36 E-value=2.3 Score=19.92 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=34.4 Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC-H----H Q ss_conf 9999999997549978999995389817999986778972679899999999883499999981011458999-8----7 Q gi|254780191|r 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN-G----N 883 (898) Q Consensus 809 Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgGG~~-~----~ 883 (898) +..+++.+..-.+-.+.+++....+++..-+...|. .+++.++++. +.+ | |||-|..|=+--+. . . T Consensus 258 ~~~~v~~l~~i~gv~~a~~~~~~~~~~~~~vS~RS~---~~~dv~~ia~---~~~-g--GGGH~~AAG~~i~~~~~e~~~ 328 (343) T 3dma_A 258 SEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSV---GKFPCNRLAA---EFF-N--GGGHLNASGGEFYGTMEEAVK 328 (343) T ss_dssp TTTGGGGGGGSTTCCEEEEEEECCCC--EEEEEEES---SSCCHHHHHH---HHT-S--CEECSSEEEEEECSCHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEC---CCCCHHHHHH---HHC-C--CCCCHHHCEEEECCCHHHHHH T ss_conf 799999874346837999999984898799998879---9888999999---875-9--956275510564799999999 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 889999999998619 Q gi|254780191|r 884 KADQAIAGVASFLKK 898 (898) Q Consensus 884 ~l~eal~~vk~~Lke 898 (898) .+.++++..++.|+| T Consensus 329 ~~~~~i~~~~~~l~e 343 (343) T 3dma_A 329 VFEQALEKYKPLLKE 343 (343) T ss_dssp HHHHHHHHSHHHHTC T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999998449 No 36 >1dpt_A D-dopachrome tautomerase; cytokine, growth factor; 1.54A {Homo sapiens} SCOP: d.80.1.3 Probab=74.97 E-value=2.8 Score=19.34 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=25.9 Q ss_pred HHCCCC----HHHHHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 314753----788999899861334189812379997188 Q gi|254780191|r 97 SFGGYF----KERAIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 97 SfgdYf----K~eai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) |+|..- .++...--.+||.+.||+|++|+|++++.- T Consensus 63 sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~f~~~ 102 (117) T 1dpt_A 63 SIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPL 102 (117) T ss_dssp EESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 9558686667799999999999987097967599999978 No 37 >1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3 Probab=74.22 E-value=3 Score=19.11 Aligned_cols=28 Identities=36% Similarity=0.631 Sum_probs=21.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 8999899861334189812379997188 Q gi|254780191|r 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 105 eai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) +...--.+||.+.||+|++|+|+++++- T Consensus 75 ~~s~~i~~~l~~~LgI~~~Riyi~f~~~ 102 (115) T 1uiz_A 75 SYTKLLCDILTKQLNIPANRVYINYYDL 102 (115) T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 9999999999997098936499999978 No 38 >1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3 Probab=72.55 E-value=3.4 Score=18.60 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 8999899861334189812379997188 Q gi|254780191|r 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 105 eai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) +...--.+||.+.||+|++|+|+.++.- T Consensus 74 ~~s~~l~~~l~~~LgI~~~RiyI~f~d~ 101 (113) T 1hfo_A 74 DHSAKLFDHLNTKLGIPKNRMYIHFVNL 101 (113) T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEEC T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 9999999999998497916499999978 No 39 >3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* 3l5r_A* 3l5s_A* 3l5t_A* 3l5u_A* ... Probab=72.12 E-value=3.4 Score=18.69 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 999899861334189812379997188 Q gi|254780191|r 106 AIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 106 ai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) ...--.+||.+.||+|++|+|++++.- T Consensus 75 ~s~~i~~~l~~~LgI~~~RiyI~f~~~ 101 (114) T 3djh_A 75 YSKLLCGLLAERLRISPDRVYINYYDM 101 (114) T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 999999999998597957499999978 No 40 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Probab=71.26 E-value=1.3 Score=21.85 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=6.5 Q ss_pred CCCHHHHHH-HHHHHHHH Q ss_conf 899999999-99999898 Q gi|254780191|r 626 PITSAELKS-IEDNVNDI 642 (898) Q Consensus 626 ~lt~eel~~-IE~~vN~~ 642 (898) .+|-..|.. ++..++.+ T Consensus 227 ~it~~~Lk~~l~~~~~~~ 244 (350) T 1b7y_A 227 GIAMAHLKGAIYELAQAL 244 (350) T ss_dssp TCCHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 022798899999999974 No 41 >2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A Probab=68.15 E-value=2.5 Score=19.72 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=18.4 Q ss_pred HHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 999999988349999998101145899987889999999998619 Q gi|254780191|r 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 (898) Q Consensus 854 ~lik~ia~~l~GGgGGGkpd~AQgGG~~~~~l~eal~~vk~~Lke 898 (898) .+..+.++.+.||||||--.+..---....+.++.++.+.+-|++ T Consensus 17 klaeeaaklleggggggggelmklceeaakkaeelfklaeerlkk 61 (62) T 2i7u_A 17 KLAEEAAKLLEGGGGGGGGELMKLCEEAAKKAEELFKLAEERLKK 61 (62) T ss_dssp HHHHHHHHHHHCSSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999987432229999999999998799999989998642 No 42 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Probab=68.12 E-value=1.4 Score=21.75 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=41.9 Q ss_pred CCCCCCCCCEECCCCCCCHHH-----CCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEE Q ss_conf 985111543224898786343-----464----88500178885422314753788999899861334189812379997 Q gi|254780191|r 59 QAVTTVQKCVRAGGKHNDLDN-----VGR----TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 (898) Q Consensus 59 ~r~~~~QkCiR~ggkhnDld~-----VG~----t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv 129 (898) .|+..||+|.++|=|..+|++ +|. .||=|+. =.+|+.+|-+ |-+..+ .+=+.+ T Consensus 35 ~p~~~s~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~-R~~Gk~~Fl~-------------LrD~~g----~iQ~v~ 96 (548) T 3i7f_A 35 MPMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAV-RGKGNMVFLF-------------LRKGIY----TCQALV 96 (548) T ss_dssp CCCCSSCGGGCCCCCBCCGGGCSGGGTTCEEEEEEEEEEE-EECSSEEEEE-------------EEETTE----EEEEEE T ss_pred CCCCCCCCCCCCCCEEEEHHHCCHHHCCCEEEEEEEEEEE-ECCCCEEEEE-------------EEECCC----CEEEEE T ss_conf 7542365554578537684347755499989998998878-7589859999-------------971871----189999 Q ss_pred CCCHHHHHHHHHHHCCCCHHHEEEC Q ss_conf 1882899997566349998997535 Q gi|254780191|r 130 YDEDEEAFKLWKKISGLSADKIIRI 154 (898) Q Consensus 130 ~~~D~e~~~iW~~~~gi~~~~i~~~ 154 (898) ..++....++|+..-.|+.+-++.+ T Consensus 97 ~~~~~~~~~~~~~~~~l~~esvv~V 121 (548) T 3i7f_A 97 MKSETISKEFVQFCQKISAESICDI 121 (548) T ss_dssp ECSSSSCHHHHHHHHTCCTTEEEEE T ss_pred ECCCCCCHHHHHHHHCCCCCCEEEE T ss_conf 7898875999999965998648999 No 43 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Probab=66.79 E-value=1.2 Score=22.31 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999898873 Q gi|254780191|r 631 ELKSIEDNVNDIIAQ 645 (898) Q Consensus 631 el~~IE~~vN~~I~~ 645 (898) .+..+|+++..++.+ T Consensus 250 ~m~~~e~~i~~~~~~ 264 (580) T 1l0w_A 250 VLELNERLMAHVFRE 264 (580) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 887668999999999 No 44 >1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Probab=63.60 E-value=1.4 Score=21.72 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.9 Q ss_pred HHHHHHHHCC Q ss_conf 9999975212 Q gi|254780191|r 592 LLHHALSTIL 601 (898) Q Consensus 592 lL~~alr~vL 601 (898) -+-.++|+.| T Consensus 188 ~i~~~iR~f~ 197 (504) T 1e1o_A 188 KILAAIRQFM 197 (504) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 45 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Probab=62.26 E-value=1.6 Score=21.25 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.8 Q ss_pred HHHHHHHHHH Q ss_conf 9999998988 Q gi|254780191|r 634 SIEDNVNDII 643 (898) Q Consensus 634 ~IE~~vN~~I 643 (898) -+|.++..++ T Consensus 247 ~~E~l~~~i~ 256 (585) T 1c0a_A 247 VMEALVRHLW 256 (585) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9989999999 No 46 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Probab=61.66 E-value=1.6 Score=21.11 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=3.6 Q ss_pred HEEECCCCCC Q ss_conf 0230143475 Q gi|254780191|r 37 MFTNSGMVPF 46 (898) Q Consensus 37 lft~Agm~~f 46 (898) +.|.|++.+. T Consensus 5 ~~~~~~~t~~ 14 (456) T 3m4p_A 5 MMTEATTTPV 14 (456) T ss_dssp ---------- T ss_pred CCCCCCCCCC T ss_conf 3111688875 No 47 >1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4 Probab=57.76 E-value=6.9 Score=16.26 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEEC Q ss_conf 7889998998613341898123799971 Q gi|254780191|r 103 KERAIQLAWDLLTKEFDLDQRRLYITVY 130 (898) Q Consensus 103 K~eai~~awe~lt~~~~l~~~~l~vtv~ 130 (898) |++-++--.+.|.+.+|+||+++||++. T Consensus 75 K~~L~~~it~~l~~~lgi~~~~v~I~i~ 102 (128) T 1mww_A 75 KKRLIKMLFSELEYKLGIRAHDVEITIK 102 (128) T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 9999999999999985949482999999 No 48 >2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis} Probab=56.57 E-value=7.3 Score=16.05 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=50.5 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHC-------CCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 9527999957999789999999999754-------997899999538981799998677897267989999999988349 Q gi|254780191|r 793 DVNFMSHIISEVDSKELKSVMDALQKKI-------QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 (898) Q Consensus 793 ~~~~i~~~~~~~d~~~Lr~l~d~l~~k~-------~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~G 865 (898) +..+.+..++.++....+.++..+.++. .+++++|++ ..+.++.+..+ ..+...+....+-..+...+. T Consensus 48 ~~~i~Vvtv~sl~g~~~~~~A~~l~~~w~iG~~~~~~GvLili~-~~dr~~~I~~g--~g~~~~l~d~~~~~ii~~~~~- 123 (157) T 2kw7_A 48 AVEFAVVTLPSIGDAPLEDFTLKLARQWGVGNEKNNNGLLLVLV-LDQRRVRFETG--YGLEGYLPDGLLSRIIHDRMI- 123 (157) T ss_dssp CCEEEEEEESBCTTCCHHHHHHHHHHHHSTTTTSCTTEEEEEEE-TTTTEEEEEEC--STTTTTCCHHHHHHHHHHTHH- T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCEEEEEEC--CCHHHCCCHHHHHHHHHHHHH- T ss_conf 97799997799999899999999999817876577787799997-47887999978--526631798999999999863- Q ss_pred CCCCCCCHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 9999981011458999878899999999986 Q gi|254780191|r 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 (898) Q Consensus 866 GgGGGkpd~AQgGG~~~~~l~eal~~vk~~L 896 (898) |.|.+| .-...+..++..+...| T Consensus 124 ------p~fk~g--~y~~gi~~~~~~i~~~l 146 (157) T 2kw7_A 124 ------PHFRSG--NYAEGLSEGVLAVQQVL 146 (157) T ss_dssp ------HHHHHT--CHHHHHHHHHHHHHHHH T ss_pred ------HHHHCC--CHHHHHHHHHHHHHHHH T ss_conf ------988769--99999999999999996 No 49 >3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A Probab=48.93 E-value=9.4 Score=15.18 Aligned_cols=29 Identities=3% Similarity=0.117 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 78899989986133418981237999718 Q gi|254780191|r 103 KERAIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 103 K~eai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) |++-+.---+.+.+.+|.|++.+||++.+ T Consensus 17 K~~L~~~lt~~~~~~lg~p~e~v~V~i~E 45 (76) T 3ej9_A 17 KRALSAGLLRVISEATGEPRENIFFVIRE 45 (76) T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 99999999999999839292519999999 No 50 >1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1 Probab=48.32 E-value=9.6 Score=15.11 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=37.0 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 9789999999999754997899999538981799998677897-267989999999988349999998101 Q gi|254780191|r 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874 (898) Q Consensus 805 d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~-~~~~A~~lik~ia~~l~GGgGGGkpd~ 874 (898) .+..++..+|.++...+++-+++-.+..+..+.+.+-..+... ..+ +.++.+.+-+ + .|+.|++|.. T Consensus 39 ~p~~~q~~Idgi~~~~~~gr~lvRpSgTEp~iRi~vE~~~~~~~~~~-~~~i~~~v~~-~-~~~~g~~p~~ 106 (112) T 1wjw_A 39 TPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRL-AYEVSLLVFQ-L-AGGIGERPQP 106 (112) T ss_dssp SSTTHHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHH-HHHHHHHHHH-H-TCCCSSCCCC T ss_pred CCHHHHHHHHHHHEECCCEEEEEEECCCCCEEEEEEEECCHHHHHHH-HHHHHHHHHH-H-HCCCCCCCCC T ss_conf 87989999998762468768999877998579999963999999999-9999999999-9-5787899989 No 51 >1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Probab=47.10 E-value=8.2 Score=15.65 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=12.9 Q ss_pred CCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 556733888421255677752013688999997521 Q gi|254780191|r 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 (898) Q Consensus 565 l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~v 600 (898) ++.|+.+-|+|.- |..-|-+ --.+|++-+|-++ T Consensus 82 lRkg~piG~kvTL--Rg~~my~-FL~kli~i~lpri 114 (182) T 1mji_A 82 LRKGMPIGLRVTL--RRDRMWI-FLEKLLNVALPRI 114 (182) T ss_dssp SSCCSEEEEEEEE--CHHHHHH-HHHHHHHTTTTTC T ss_pred CCCCCCEEEEEEC--CHHHHHH-HHHHHHHHHHHHC T ss_conf 1379820699983--7889999-9999999772020 No 52 >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5} Probab=43.79 E-value=11 Score=14.61 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=9.5 Q ss_pred CCCCCEEEEEECC Q ss_conf 5556248998447 Q gi|254780191|r 671 KYNDRVRVVSVEY 683 (898) Q Consensus 671 kygd~VRVV~I~~ 683 (898) +.||.|=++.+|. T Consensus 286 ~~Gd~vll~~~G~ 298 (309) T 2ebd_A 286 KRGDLILMTAMGG 298 (309) T ss_dssp CTTCEEEEEEEET T ss_pred CCCCEEEEEEECH T ss_conf 9989999999905 No 53 >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A Probab=40.93 E-value=12 Score=14.30 Aligned_cols=23 Identities=30% Similarity=0.754 Sum_probs=11.2 Q ss_pred HHHHHHHCCCCHHHEEECCCCCCCCCCC Q ss_conf 9975663499989975357866654579 Q gi|254780191|r 137 FKLWKKISGLSADKIIRITTNDNFWSMA 164 (898) Q Consensus 137 ~~iW~~~~gi~~~~i~~~~~~dNfW~~g 164 (898) .+||.+..|++ .++..+||.++| T Consensus 20 ~~i~~~vL~~~-----~i~~~~~Ff~lG 42 (91) T 1dny_A 20 AEIWERVLGVS-----GIGILDNFFQIG 42 (91) T ss_dssp HHHHHHHHTCS-----SCCSSCCTTSSC T ss_pred HHHHHHHCCCC-----CCCCCCCHHHCC T ss_conf 99999984999-----889998978828 No 54 >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis} Probab=40.34 E-value=12 Score=14.23 Aligned_cols=24 Identities=13% Similarity=0.602 Sum_probs=18.4 Q ss_pred HHHHHHHHCCCCHHHEEECCCCCCCCCCC Q ss_conf 99975663499989975357866654579 Q gi|254780191|r 136 AFKLWKKISGLSADKIIRITTNDNFWSMA 164 (898) Q Consensus 136 ~~~iW~~~~gi~~~~i~~~~~~dNfW~~g 164 (898) -.+||.++.|+| .++..|||.+.| T Consensus 15 l~~iw~~vL~~~-----~i~~~d~Ff~lG 38 (520) T 2jgp_A 15 LAQVWEQVLNVP-----QVGALDDFFALG 38 (520) T ss_dssp HHHHHHHHHTCS-----CCCTTCBTTTTT T ss_pred HHHHHHHHCCCC-----CCCCCCCHHHHC T ss_conf 999999983999-----979999967741 No 55 >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* Probab=40.31 E-value=7 Score=16.18 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=23.6 Q ss_pred ECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 0243000002476789999999999999898873 Q gi|254780191|r 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 (898) Q Consensus 612 v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~ 645 (898) .+|+.+|-=|.-...+|+||..+|.+. |.|+.+ T Consensus 128 Kt~eeiR~~fgI~~D~T~ee~~~i~~e-~~W~fe 160 (160) T 2p1m_A 128 KTPEEIRTTFNIKNDFTPEEEEEVRRE-NQWAFE 160 (160) T ss_dssp CCHHHHHHHTTCCCCCCHHHHHHHHHH-HHHHHC T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCCC T ss_conf 999999999299988981045789883-175038 No 56 >2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.46A {Aquifex aeolicus} SCOP: d.108.1.9 Probab=39.31 E-value=13 Score=14.12 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=8.8 Q ss_pred CCHHHHHHHHHHHHHHHCC Q ss_conf 3005769999999997306 Q gi|254780191|r 243 NYDIDLFKHLIQASEQVTG 261 (898) Q Consensus 243 ~ydtD~f~pii~~i~~~~g 261 (898) .+++.++..|++.+....| T Consensus 79 ~~~s~~e~~ly~lls~~~g 97 (203) T 2arh_A 79 FFGSEAERKLYEFLSEHFG 97 (203) T ss_dssp HTTSHHHHHHHHHHHTTCS T ss_pred CCCCHHHHHHHHHHHHHCC T ss_conf 2377889999999875268 No 57 >2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei TREU927} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D Probab=38.99 E-value=13 Score=14.17 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=32.3 Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf 65533899851046787556733888421255677752013688999997521254 Q gi|254780191|r 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 (898) Q Consensus 548 k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~ 603 (898) |..+|+++| |.+....-.. .-||..|++..-.-|-.|.|..||-+-+|. T Consensus 101 k~~~gy~l~-gqvhr~~sq~------~e~wsv~f~n~favtlehflesaltesfgf 149 (187) T 2gia_B 101 KSAQGYHLH-GKVHRVASQR------MEDWSVKFDNHFAVTLEHFLESALDESFGF 149 (187) T ss_dssp ECSSEEEEE-EEECBTTCCC------CEEEEEEEETHHHHHHHHHHHHHHHHTTCH T ss_pred ECCCCEEEE-EEEEECHHHH------HHHHHEEECCCCCEEHHHHHHHHHHHHCCH T ss_conf 268722886-3585155554------013403312320001999998776421025 No 58 >2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Probab=37.58 E-value=4.3 Score=17.88 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC Q ss_conf 899998748989999998999999998611546424574379985245888 Q gi|254780191|r 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 (898) Q Consensus 347 I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP 397 (898) |..+|..-+.+=...|..=...|+.+.+.+-.+++|+|++.-.|+..||.| T Consensus 155 v~~lL~~a~~~A~~iL~~n~~~L~~la~~LLeketL~g~ei~~il~~~~~~ 205 (238) T 2di4_A 155 VKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIE 205 (238) T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC T ss_conf 999999999999999999499999999999986737899999999548998 No 59 >3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A Probab=37.43 E-value=12 Score=14.23 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=36.7 Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC---CCCHHHHHHHHHH Q ss_conf 4642457437998524588889999876650774---4358889999999 Q gi|254780191|r 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA---GIDIISFNQALEE 424 (898) Q Consensus 378 ~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~---~vD~~~f~~~m~~ 424 (898) .++.|+++++..++-.-|+|.+..+.|-..-... .+|.++|..+|.- T Consensus 45 ~~G~Is~~el~~~l~ks~L~~~~L~~Iw~laD~d~dG~L~~~EF~~am~L 94 (121) T 3fia_A 45 ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKL 94 (121) T ss_dssp BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH T ss_pred CCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99878099999999992999999999999707899890979999999999 No 60 >1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Probab=36.25 E-value=14 Score=13.77 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.8 Q ss_pred CCHHHHHHHHHHH---CCC-CCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 1368899999752---125-444445530024300000247678999999999999 Q gi|254780191|r 587 HSATHLLHHALST---ILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 (898) Q Consensus 587 HTatHlL~~alr~---vLG-~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~ 638 (898) -++++|+.-|+++ +|| .|..-.+|++.|-+- ++-.-.|+.+++..|+.+ T Consensus 361 ~~g~~L~~Va~HE~GH~LGL~HS~~~~alM~P~Y~---~~~~~~L~~DDi~gIQ~L 413 (421) T 1eak_A 361 DQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYT---YTKNFRLSQDDIKGIQEL 413 (421) T ss_dssp CCCEEHHHHHHHHHHHHTTCCCCSCTTSTTCSBCC---CCSSCCCCHHHHHHHHHH T ss_pred CCCCCEEEEEHHHHCCCCCCCCCCCCCCEECCEEC---CCCCCCCCHHHHHHHHHH T ss_conf 77744131103242220367667999860103131---577788887899999997 No 61 >2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A Probab=35.86 E-value=7.4 Score=15.98 Aligned_cols=82 Identities=9% Similarity=0.088 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCH Q ss_conf 999999999839998899999999999999999999999999876365--------355536952799995--7--9997 Q gi|254780191|r 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDS 806 (898) Q Consensus 739 ~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~ 806 (898) ..+...+++......+...+..+++.+++..+..+..+.........+ ...+--+.+.+.... . ..++ T Consensus 130 ~~Ia~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~~~~~~~i~~H~af~Y~~~~~gl~~~~~~~~~~~~~ps~ 209 (284) T 2prs_A 130 VAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGA 209 (284) T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEECCHHHHHHHHCCCEEEEEECCCCCCCCCH T ss_conf 99999998759486766778999999999998999999834242577310160567689976984754313587667898 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 89999999999754 Q gi|254780191|r 807 KELKSVMDALQKKI 820 (898) Q Consensus 807 ~~Lr~l~d~l~~k~ 820 (898) +.|+.+.+.++++. T Consensus 210 ~~l~~~~~~ik~~~ 223 (284) T 2prs_A 210 QRLHEIRTQLVEQK 223 (284) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999875159 No 62 >3e1y_E Eukaryotic peptide chain release factor GTP- binding subunit ERF3A; translation termination, peptide release, PTC, acetylation, cytoplasm; HET: ATP; 3.80A {Homo sapiens} Probab=33.62 E-value=16 Score=13.47 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=27.6 Q ss_pred CCCCCEEEEEEEECCCEEEECCCCCEEEEEEC Q ss_conf 56553489999747813200047976999973 Q gi|254780191|r 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 (898) Q Consensus 485 ~~~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd 516 (898) .....++|..|...++.++++.+|+.+.+.|. T Consensus 41 Ps~~~~~VksI~~~~~~~~~a~aG~~v~l~L~ 72 (204) T 3e1y_E 41 PNKHNVEVLGILSDDVETDTVAPGENLKIRLK 72 (204) T ss_dssp TTTEEEEEEEECSSSSCBSEECTTSEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEEEEC T ss_conf 89967999999984850020168866778863 No 63 >1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small chain); lyase (carbon-carbon); 2.70A {Cupriavidus necator} SCOP: d.73.1.1 Probab=33.28 E-value=16 Score=13.43 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=58.3 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHH----------------CCCCCEEEEE Q ss_conf 247678999999999999989887304530466123222100----03554431----------------5556248998 Q gi|254780191|r 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGT----------------KYNDRVRVVS 680 (898) Q Consensus 621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~----ga~alfge----------------kygd~VRVV~ 680 (898) ||+--+||++||. +.+..+|.++..+.+++.+....+.. +...+||. -.++-||+|- T Consensus 8 fSyLP~Ltd~qI~---~QI~yll~qGw~i~~E~ad~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~~~~p~~YVRliG 84 (139) T 1bxn_I 8 FSFLPELTDEQIT---KQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTA 84 (139) T ss_dssp TTTSSCCCHHHHH---HHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEEEE T ss_pred ECCCCCCCHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 0458999999999---9999999789973489816887777610053566557999999999999999989987699999 Q ss_pred ECCCCCCCCCEECCC--CCCCCCHHHHHHHHEECCCCCCCCC Q ss_conf 447677855310156--2225886460110011012126882 Q gi|254780191|r 681 VEYEDGGVHSSALCG--GTHVSSTGEIMLLYIVSESSIRAGI 720 (898) Q Consensus 681 I~~~d~~~~S~ElCG--GTHV~nTgeIG~fkIise~si~sGv 720 (898) |+..-. ++ |. ..=|.+-++=..|.+.+.++.+.-+ T Consensus 85 fD~~rq----~Q-~~~~sfIV~RP~~~pgf~l~r~~~~gR~~ 121 (139) T 1bxn_I 85 FDSTHT----VE-SVVMSFIVNRPADEPGFRLVRQEEPGRTL 121 (139) T ss_dssp ECTTTC----CE-EEEEECCCCGGGSCSSCEEEEEECSTTCE T ss_pred EECCCC----EE-EEEEEEEEECCCCCCCCEEEECCCCCCEE T ss_conf 968865----58-72699999889999984555102699504 No 64 >3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A Probab=32.34 E-value=16 Score=13.32 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEEC Q ss_conf 7889998998613341898123799971 Q gi|254780191|r 103 KERAIQLAWDLLTKEFDLDQRRLYITVY 130 (898) Q Consensus 103 K~eai~~awe~lt~~~~l~~~~l~vtv~ 130 (898) |++-+.=--+.+.+.+|.||+..||++. T Consensus 19 K~~l~~~iT~~~~~~lg~~~e~v~V~i~ 46 (67) T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIID 46 (67) T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 9999999999999995959243999999 No 65 >1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A Probab=30.84 E-value=7 Score=16.18 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=12.6 Q ss_pred CCCCCHHHCCCCCCCHHH Q ss_conf 987863434648850017 Q gi|254780191|r 72 GKHNDLDNVGRTNRHHTF 89 (898) Q Consensus 72 gkhnDld~VG~t~rH~Tf 89 (898) +|||||--||+++|--+| T Consensus 84 A~FnDLRFvGRSGRGKsF 101 (140) T 1eaq_A 84 ARFNDLRFVGRSGRGKSF 101 (140) T ss_dssp EECSSCEECSCCCTTCCB T ss_pred CCCCCEEEECCCCCCCEE T ss_conf 321560671467887348 No 66 >3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} Probab=30.58 E-value=12 Score=14.40 Aligned_cols=200 Identities=9% Similarity=0.052 Sum_probs=86.7 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH Q ss_conf 36889999975212544444553002430000024767899999999999998988730453046612322210003554 Q gi|254780191|r 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667 (898) Q Consensus 588 TatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~al 667 (898) |.+..|....+++-|+.+.- +++.+. -| .|.-.+++.+++++.+ ++-+|+.+...+.......++. T Consensus 15 ts~~pl~~lv~~I~gd~v~V--~li~~g---~d-pH~ye~~p~d~~~l~~-ADliv~~G~~lE~~~~~~~~~~------- 80 (284) T 3cx3_A 15 TSFYPIYAMVKEVSGDLNDV--RMIQSS---SG-IHSFEPSANDIAAIYD-ADVFVYHSHTLESWAGSLDPNL------- 80 (284) T ss_dssp ESSHHHHHHHHHHHTTSSEE--EECCCC---SC-TTTCCCCHHHHHHHHH-SSEEEESCTTTSCTTTTCCTTT------- T ss_pred EECHHHHHHHHHHCCCCCEE--EECCCC---CC-CCCCCCCHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHH------- T ss_conf 98789999999974996159--971899---89-8735589999999964-9999991885077899999986------- Q ss_pred HHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH Q ss_conf 43155562489984476778553101562225886460110011012126882899997168999999999999999999 Q gi|254780191|r 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 (898) Q Consensus 668 fgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~~A~~~~~~~~~~l~~la~ 747 (898) -...+.++..... .-..+.....|... ++-. .+ .|-.-=..= ..-.....-...+...+++ T Consensus 81 ----~~~~~~v~~~~~~---~~~~~~~~~~~~~~-~~~~-----~~----~~~~dPH~W--ldp~~~~~~a~~I~~~L~~ 141 (284) T 3cx3_A 81 ----KKSKVKVLEASEG---MTLERVPGLEDVEA-GDGV-----DE----KTLYDPHTW--LDPEKAGEEAQIIADKLSE 141 (284) T ss_dssp ----TTCCCEEEETTTT---CCCCBCCC-----------------------CCBCCCGG--GSHHHHHHHHHHHHHHHHH T ss_pred ----HCCCCEEEECCCC---CCCCCCCCCCCCCC-CCCC-----CC----CCCCCCCCC--CCHHHHHHHHHHHHHHHHH T ss_conf ----4157513211236---54000134211004-5554-----54----568888665--7836789999999999998 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCHHHHHHHHHH Q ss_conf 839998899999999999999999999999999876365--------355536952799995--7--9997899999999 Q gi|254780191|r 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDSKELKSVMDA 815 (898) Q Consensus 748 ~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~~~Lr~l~d~ 815 (898) +.....+...+..+++.+++.++..+............. ...+--+.+.+.... . ..+++.|..+.+. T Consensus 142 ~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~~~~~~~v~~h~a~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ 221 (284) T 3cx3_A 142 VDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEF 221 (284) T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 68310678899999998778998899999875314564588661279999987994444111256554228899999999 Q ss_pred HHHHC Q ss_conf 99754 Q gi|254780191|r 816 LQKKI 820 (898) Q Consensus 816 l~~k~ 820 (898) +++.. T Consensus 222 ik~~~ 226 (284) T 3cx3_A 222 VKTYK 226 (284) T ss_dssp HHHTT T ss_pred HHHCC T ss_conf 98559 No 67 >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} Probab=30.06 E-value=18 Score=13.05 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.9 Q ss_pred CCCCCCHHHHHHHHEECCCCCCCCCEEEEE Q ss_conf 222588646011001101212688289999 Q gi|254780191|r 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 (898) Q Consensus 696 GTHV~nTgeIG~fkIise~si~sGvRRIea 725 (898) |-|..|+--.+. -.+...+.+|++.|.. T Consensus 205 ~~H~Hn~~Gla~--an~laAi~aG~~~id~ 232 (307) T 1ydo_A 205 ALHFHDTRGTAL--ANMVTALQMGITVFDG 232 (307) T ss_dssp EEECBGGGSCHH--HHHHHHHHHTCCEEEE T ss_pred CEEECCCCCHHH--HHHHHHHHHCCCEEEE T ss_conf 055458835699--9999999919999996 No 68 >2flt_A CIS-3-chloroacrylic acid dehalogenase; 4OT family, hydratase, covalent inhibitor, 4-oxalocrotonate tautomerase, hydrolase; 2.10A {Coryneform bacterium} PDB: 2flz_A Probab=29.52 E-value=18 Score=12.98 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEE Q ss_conf 788999899861334189812379997 Q gi|254780191|r 103 KERAIQLAWDLLTKEFDLDQRRLYITV 129 (898) Q Consensus 103 K~eai~~awe~lt~~~~l~~~~l~vtv 129 (898) |+.-+..-.+.|.+.+|++++.+||.+ T Consensus 78 K~~L~~~l~~~L~~~~gi~~~~vwv~~ 104 (149) T 2flt_A 78 KGQLAQRIVDDVSVAAEIDRKHIWVYF 104 (149) T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 999999999999998598945489999 No 69 >2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase, peptidyl carrier protein, thiolation domain, non-ribosomal peptide synthetase; NMR {Escherichia coli} Probab=29.34 E-value=16 Score=13.38 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=14.1 Q ss_pred HHHHHHHHHCCCCHHHEEECCCCCCCCCCC Q ss_conf 999975663499989975357866654579 Q gi|254780191|r 135 EAFKLWKKISGLSADKIIRITTNDNFWSMA 164 (898) Q Consensus 135 e~~~iW~~~~gi~~~~i~~~~~~dNfW~~g 164 (898) .-.+||.++.|++ .+|..|||.+.| T Consensus 21 ~l~~iw~~vLg~~-----~ig~~d~Ff~lG 45 (343) T 2roq_A 21 IIAAAFSSLLGCD-----VQDADADFFALG 45 (343) T ss_dssp HHHHHHHHHTTSS-----CCCSSCCHHHHT T ss_pred HHHHHHHHHHCCC-----CCCCCCCHHHCC T ss_conf 9999999983889-----779999936668 No 70 >3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ... Probab=28.96 E-value=7.8 Score=15.83 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=15.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 678999999999999989887304 Q gi|254780191|r 624 SKPITSAELKSIEDNVNDIIAQNL 647 (898) Q Consensus 624 ~~~lt~eel~~IE~~vN~~I~~n~ 647 (898) -..||++|+..+=+.+-.++.+.+ T Consensus 191 ~~~Ls~~~~~~L~~~~~~vl~~ai 214 (256) T 3gpu_A 191 AASLSSKEIERLHEEMVATIGEAV 214 (256) T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 133899999999999999999999 No 71 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Probab=28.46 E-value=19 Score=12.85 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=9.9 Q ss_pred HCCCCCCCHHHHHHHHHH Q ss_conf 114589998788999999 Q gi|254780191|r 874 MAQSGGPNGNKADQAIAG 891 (898) Q Consensus 874 ~AQgGG~~~~~l~eal~~ 891 (898) -|-|-+-+.+.|-++|+. T Consensus 319 pAvGfai~ld~l~~~l~~ 336 (344) T 1z7m_A 319 FAIGFCCHMDTILKALER 336 (344) T ss_dssp CCEEEEEEHHHHHHHHHH T ss_pred CEEEEEEEHHHHHHHHHH T ss_conf 779999679999999986 No 72 >3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Probab=27.77 E-value=19 Score=12.77 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=23.3 Q ss_pred HHHHHHHHHHH-HHCCCC-CCHHHHHHHHHHHHHHHHHH Q ss_conf 88999999999-848743-31045689999986455555 Q gi|254780191|r 303 RIMRRAMCYAR-LLGYTE-PLMMHLLPALCTEMGSAYPE 339 (898) Q Consensus 303 rilRRa~r~~~-~lg~~~-~fl~~lv~~v~~~m~~~ype 339 (898) ..|++++.|+. .+|++. .|++++++.++ ++.||. T Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~---g~~YP~ 135 (533) T 3f6t_A 100 KFLIDAVNYCHTELGLNRDKVVAEWVNGAV---ANNYPV 135 (533) T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---TCSCCS T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCC T ss_conf 899999999998868997899999987420---688989 No 73 >1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1 Probab=27.47 E-value=17 Score=13.24 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHH Q ss_conf 017888542231 Q gi|254780191|r 87 HTFFEMLGNFSF 98 (898) Q Consensus 87 ~TfFEMlGn~Sf 98 (898) ..+|-|.|||.- T Consensus 10 ~ay~smvgnwak 21 (26) T 1emz_A 10 IAYFSMVGNWAK 21 (26) T ss_dssp HHHHHHHHHHHC T ss_pred HHHHHHHHHHHH T ss_conf 899999603865 No 74 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Probab=27.15 E-value=20 Score=12.69 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999999999999 Q gi|254780191|r 753 QGNVVGRVEEIWEEYRKLQLIH 774 (898) Q Consensus 753 ~~~i~~ki~~L~~e~K~l~k~~ 774 (898) ..++..|++.|.+|+++|+.++ T Consensus 28 ~~eLkqK~e~L~eEN~eLK~kL 49 (53) T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999998 No 75 >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Probab=27.12 E-value=20 Score=12.68 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCC Q ss_conf 899999999999789889116675 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSL 28 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~sl 28 (898) ..|++.+.+.|+++|...|....+ T Consensus 28 ~~i~~~l~~~~~~~Gy~~I~tP~~ 51 (400) T 3od1_A 28 KNICDQMTEEINLWGYDMIETPTL 51 (400) T ss_dssp HHHHHHHHHHHHHTTCEECBCCSE T ss_pred HHHHHHHHHHHHHCCCEEEECCCE T ss_conf 999999999999869957676856 No 76 >1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10 Probab=25.24 E-value=4.8 Score=17.49 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 248999998989999874033334446412---577889999999998487433104568999998645555 Q gi|254780191|r 270 VNHRVIVDHLRSSSFLIADGILPANEGRGY---VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 (898) Q Consensus 270 ~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGY---vlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~yp 338 (898) +.|-+..|-+|-..-.- .+--=+-.|||- ...++.||++|.+.++. ...|.+.+..+.+...+.|+ T Consensus 117 ~P~H~~lD~~~E~~r~~-g~~~iGTTgrGIGPaY~DK~~R~gir~~Dl~d--~~~l~~kl~~l~~~~~~~~~ 185 (442) T 1p9b_A 117 FDIHQIIDSIQETKKLK-EGKQIGTTKRGIGPCYSTKASRIGIRLGTLKN--FENFKNMYSKLIDHLMDLYN 185 (442) T ss_dssp CHHHHHHHHHHHHHHHH-TTCCCCCCSSSHHHHHHHHHTTCCCBGGGGGS--HHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHCC T ss_conf 85788766777654114-77655668887869889765401441221158--67899999999987755312 No 77 >3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A Probab=24.40 E-value=10 Score=14.91 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=83.5 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH Q ss_conf 36889999975212544444553002430000024767899999999999998988730453046612322210003554 Q gi|254780191|r 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667 (898) Q Consensus 588 TatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~al 667 (898) |.+.-|....+++-|+.+.- +++.+. .| .|.-.+++.++.++.+ +.-+|......+. |++. ... T Consensus 17 ~s~~pl~~iv~~I~Gd~~~V--~li~~g---~d-PH~ye~~p~d~~~l~~-Adliv~~G~~lE~-~l~~--~~~------ 80 (286) T 3gi1_A 17 TSFYPMYAMTKEVSGDLNDV--RMIQSG---AG-IHSFEPSVNDVAAIYD-ADLFVYHSHTLEA-WARD--LDP------ 80 (286) T ss_dssp ESSHHHHHHHHHHHTTSSEE--EEC---------CCSCCCCHHHHHHHHT-SSEEEESCTTTSG-GGTT--CCT------ T ss_pred EECHHHHHHHHHHCCCCCEE--EECCCC---CC-CCCCCCCHHHHHHHHC-CCEEEEECCCCHH-HHHH--HHH------ T ss_conf 98789999999983897159--975899---89-7644589999999966-9999992885157-8999--998------ Q ss_pred HHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECH----HHHHHHHHHHHHHH Q ss_conf 43155562489984476778553101562225886460110011012126882899997168----99999999999999 Q gi|254780191|r 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ----RARSHLMGQDEKLK 743 (898) Q Consensus 668 fgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~----~A~~~~~~~~~~l~ 743 (898) .--...+.++...... ...+..+.-|........ . .| .--+ .-.....-...+-+ T Consensus 81 --~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~---------~-~~------~~dPH~Wldp~~~~~~a~~I~~ 139 (286) T 3gi1_A 81 --NLKKSKVDVFEASKPL---TLDRVKGLEDMEVTQGID---------P-AT------LYDPHTWTDPVLAGEEAVNIAK 139 (286) T ss_dssp --TTTTCCCEEEETTTTS---CCCBCC-------------------------------CBCCCGGGSHHHHHHHHHHHHH T ss_pred --HCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCC---------C-CC------CCCCCEECCHHHHHHHHHHHHH T ss_conf --6445676424225651---221026765222346777---------7-78------9998741789999999999999 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCHHHHHH Q ss_conf 9999839998899999999999999999999999999876365--------355536952799995--7--999789999 Q gi|254780191|r 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDSKELKS 811 (898) Q Consensus 744 ~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~~~Lr~ 811 (898) .++++.....+...+..+++.+++..+..+..+.........+ ...+--+++.+...- . ..+++.|.+ T Consensus 140 ~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~H~a~~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~ 219 (286) T 3gi1_A 140 ELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKE 219 (286) T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHH T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH T ss_conf 99876968789999999999999999999999975431335258867646899998398514421246777898778999 Q ss_pred HHHHHHHH Q ss_conf 99999975 Q gi|254780191|r 812 VMDALQKK 819 (898) Q Consensus 812 l~d~l~~k 819 (898) +.+.+++. T Consensus 220 l~~~ik~~ 227 (286) T 3gi1_A 220 IQDFVKEY 227 (286) T ss_dssp HHHHHHHT T ss_pred HHHHHHHC T ss_conf 99999975 No 78 >1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1 Probab=24.37 E-value=18 Score=13.02 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=8.8 Q ss_pred CCCCCCEECCCCCCCH Q ss_conf 1115432248987863 Q gi|254780191|r 62 TTVQKCVRAGGKHNDL 77 (898) Q Consensus 62 ~~~QkCiR~ggkhnDl 77 (898) -+.||||-+ |.|+ T Consensus 22 gnpqkciga---hedv 34 (34) T 1ag7_A 22 GNPQKCIGA---HEDV 34 (34) T ss_dssp SSSCEEEET---TCCC T ss_pred CCCHHCCCC---CCCC T ss_conf 981221354---4669 No 79 >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Probab=23.81 E-value=22 Score=12.24 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=8.9 Q ss_pred CCCCCEEEEEECC Q ss_conf 5556248998447 Q gi|254780191|r 671 KYNDRVRVVSVEY 683 (898) Q Consensus 671 kygd~VRVV~I~~ 683 (898) +.||.|=++.+|. T Consensus 288 ~~Gd~vll~~~G~ 300 (313) T 1zow_A 288 KDDDTIVLVGFGG 300 (313) T ss_dssp CTTCEEEEEEEET T ss_pred CCCCEEEEEEECH T ss_conf 9959999999965 No 80 >2rh3_A Protein VIRC2; ribbon-helix-helix, crown GALL tumor, plasmid, DNA binding protein; 1.70A {Agrobacterium tumefaciens} SCOP: a.43.1.10 Probab=23.56 E-value=23 Score=12.21 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=20.3 Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 8524588889999876650774435888999999999764 Q gi|254780191|r 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429 (898) Q Consensus 390 LyDTyGfP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~s 429 (898) .-.+.=||.++.+ +|+.+ +|.-|++....=-+..+ T Consensus 71 V~TsRmfp~~l~e-~Ar~h----FDplglesarafg~klA 105 (121) T 2rh3_A 71 VQTSRMFPVSLIE-AARNH----FDPLGLETARAFGHKLA 105 (121) T ss_dssp EEEEEECCHHHHH-HHHHH----HSTTSCSCHHHHHHHHH T ss_pred EEECCCCCHHHHH-HHHHH----CCCHHHHHHHHHHHHHH T ss_conf 8752437588999-99983----68143688999999999 No 81 >2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A* Probab=23.23 E-value=23 Score=12.16 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=18.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99988999999999999999999999 Q gi|254780191|r 750 KVSQGNVVGRVEEIWEEYRKLQLIHA 775 (898) Q Consensus 750 ~~~~~~i~~ki~~L~~e~K~l~k~~~ 775 (898) ....+++..++.+|+-|+|.|++++. T Consensus 7 ~~tvEeLaaeL~kL~mENK~LKkkl~ 32 (110) T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVK 32 (110) T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC- T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999987899999986 No 82 >1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 Probab=23.18 E-value=18 Score=12.95 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=5.9 Q ss_pred EEECCCCCCCEEEEE Q ss_conf 852245655338998 Q gi|254780191|r 542 QITDVQKKAEGIFVH 556 (898) Q Consensus 542 ~V~dv~k~~~g~i~H 556 (898) .|..+...++-.++| T Consensus 81 kiYRifp~Ge~~~lh 95 (138) T 1jb0_D 81 KIYRIFPDGETVLIH 95 (138) T ss_dssp EEEEECTTCCEEEEE T ss_pred EEEEECCCCCEEEEC T ss_conf 489963899557863 No 83 >2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii OT3} Probab=23.09 E-value=11 Score=14.64 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=78.9 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHCCC---CCCCC----CCHHHHHHHHHHHHHHH-------- Q ss_conf 53101757999999988798530--057699999999973067---85433----50248999998989999-------- Q gi|254780191|r 222 MSIDTGMGLERMATVLQEKTNNY--DIDLFKHLIQASEQVTGM---KYEGN----NIVNHRVIVDHLRSSSF-------- 284 (898) Q Consensus 222 ~~IDTGmGLERl~~vlqg~~s~y--dtD~f~pii~~i~~~~g~---~y~~~----~~~~~rvIaDH~Ra~~f-------- 284 (898) ..||+-+-|||+.|+-.+.+.-. +.|-++.++..-+-+-.. +|+-+ .+..+++-...+|..-- T Consensus 31 ~~vdve~~leRv~w~k~~~~pe~il~~~d~kDL~~FYALLGALa~SPYGlEmELVk~aNl~iY~eRirr~~~i~~~~i~v 110 (222) T 2dla_A 31 KIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISI 110 (222) T ss_dssp GTCCHHHHHHHHGGGTCGGGSHHHHSCCHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHHHHHTTCSSCCTTTSSS T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 01459999989887642798578747588999999999986461597540034676522699999998743577430123 Q ss_pred -HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHH Q ss_conf -87403333444641257788999999999848-7433104568999-99864555-----5557646788999987489 Q gi|254780191|r 285 -LIADGILPANEGRGYVLRRIMRRAMCYARLLG-YTEPLMMHLLPAL-CTEMGSAY-----PELIQAKLLIEETLRSEDE 356 (898) Q Consensus 285 -~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg-~~~~fl~~lv~~v-~~~m~~~y-----peL~~~~~~I~~ii~~EE~ 356 (898) ..+++-+|-|. |++|-| +|+. |. -+.+ |.+..+.+ -+.++++| -.|.. .+.|+.=++ T Consensus 111 ~~v~~~E~P~~D------~~ilEr--~~~~-lPeYk~~-lkdFL~L~~~~sLk~~YIr~G~~YLr~-----e~liklW~K 175 (222) T 2dla_A 111 DVSTAIEFPTED------VRKIER--VYGK-IPEYTMK-ISDFLDLVPDEKLANYYIYEGRVYLKR-----EDLIRIWSK 175 (222) T ss_dssp SEEECCCCCGGG------HHHHHH--HHSS-CCCEEEE-HHHHHHHCTTSCGGGSEEETTEEEECH-----HHHHHHHHH T ss_pred EECCCCCCCCHH------HHHHHH--HHCC-CCHHHHH-HHHHHHHCCCCCCCEEEEECCEEEECH-----HHHHHHHHH T ss_conf 562556588038------999999--9642-8513632-999985447875022788857467629-----889999999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 89999998999999998 Q gi|254780191|r 357 RFGKTLDRGLVLLDGVL 373 (898) Q Consensus 357 ~F~~TL~~G~~~l~~~i 373 (898) .|.+.++++..++-.+- T Consensus 176 aFEkN~EraVNiLYEiR 192 (222) T 2dla_A 176 AFERNVERGVNMLYEIR 192 (222) T ss_dssp HHHHHHHHHHHHTSSST T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99998999999999999 No 84 >1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco/reaction intermediate); HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B Probab=22.79 E-value=23 Score=12.10 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=56.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CHHHHHHH----------------HCCCCCEEEEE Q ss_conf 24767899999999999998988730453046612322210----00355443----------------15556248998 Q gi|254780191|r 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLG----------------TKYNDRVRVVS 680 (898) Q Consensus 621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~----~ga~alfg----------------ekygd~VRVV~ 680 (898) ||+--+||+++|. +.|..+|.++..+.+++.+....+. .+...+|| +-.++-||+|- T Consensus 8 fSyLP~LtdeqI~---~QV~yll~qGw~i~iE~~d~~~~r~~yW~mw~lPmf~~~d~~~Vl~Ele~C~~~~p~~YVRlig 84 (138) T 1bwv_S 8 FSFLPDLTDEQIK---KQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVG 84 (138) T ss_dssp TTTSCCCCHHHHH---HHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEEE T ss_pred ECCCCCCCHHHHH---HHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 0458999999999---9999997089876467636775566400032576457999999999999999989977499999 Q ss_pred ECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCC Q ss_conf 4476778553101562225886460110011012126882 Q gi|254780191|r 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 (898) Q Consensus 681 I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGv 720 (898) |+..-. . .--|-+.=|.+-+.=-.|.+.+.++-+.-+ T Consensus 85 fD~~rq-~--qs~~~sfIV~RP~~~pgf~l~r~e~~gR~~ 121 (138) T 1bwv_S 85 FSSVRG-I--ESTIISFIVNRPKHEPGFNLMRQEDKSRSI 121 (138) T ss_dssp EECCTT-T--CEEEEEEEEECCSCCCCEEEEEEECSTTCE T ss_pred EECCCC-E--EEEEEEEEECCCCCCCCCEEEEECCCCCCE T ss_conf 978744-5--786899885079999982466423799532 No 85 >2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Probab=21.91 E-value=24 Score=11.98 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=35.7 Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---CCCCHHHHHHHHHH Q ss_conf 5464245743799852458888999987665077---44358889999999 Q gi|254780191|r 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL---AGIDIISFNQALEE 424 (898) Q Consensus 377 ~~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi---~~vD~~~f~~~m~~ 424 (898) .+++.|+++++-.++-..|+|.+..+.|-..-.. ..+|.++|..+|.- T Consensus 26 d~~G~i~~~e~~~~l~~s~L~~~~L~~Iw~l~D~d~dG~L~~~EF~~am~L 76 (111) T 2kgr_A 26 TMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHL 76 (111) T ss_dssp SSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHH T ss_pred CCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHH T ss_conf 999857078898889872889999999999766799980879999999999 No 86 >2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A Probab=21.78 E-value=24 Score=11.96 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHH-H----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5778899999999-9----848743310456899999864555555764 Q gi|254780191|r 300 VLRRIMRRAMCYA-R----LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 (898) Q Consensus 300 vlRrilRRa~r~~-~----~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~ 343 (898) .+|..||+++..- . ..++..+.+.++.......+...||++.+. T Consensus 20 ~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~eE 68 (357) T 2x1d_A 20 AAKAVIARSIDFAVDLIRGKTKKTDEELKQVLSQLGRVIEERWPKYYEE 68 (357) T ss_dssp HTHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 9999999999999999975258987999999999999998879188999 No 87 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=21.37 E-value=25 Score=11.90 Aligned_cols=20 Identities=10% Similarity=-0.076 Sum_probs=9.1 Q ss_pred HCCCCCCHHHHHHHHHHHHH Q ss_conf 48743310456899999864 Q gi|254780191|r 315 LGYTEPLMMHLLPALCTEMG 334 (898) Q Consensus 315 lg~~~~fl~~lv~~v~~~m~ 334 (898) +|.--|....|.+.+..... T Consensus 15 ~g~lCpt~c~l~d~L~kqe~ 34 (409) T 1m1j_C 15 FGSYCPTTCGIADFFNKYRL 34 (409) T ss_dssp GCCEEECTTHHHHHHHHHHH T ss_pred HCCCCCCCCHHHHHHHHHHH T ss_conf 48858884157799999998 No 88 >2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A Probab=20.86 E-value=25 Score=11.82 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=9.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHH Q ss_conf 789999999999999898873 Q gi|254780191|r 625 KPITSAELKSIEDNVNDIIAQ 645 (898) Q Consensus 625 ~~lt~eel~~IE~~vN~~I~~ 645 (898) +..|+|++++|=+.+-+...+ T Consensus 10 ~g~s~e~~~~i~~~vh~alve 30 (131) T 2aal_A 10 YGRTDAQIKSLLDAAHGAMVD 30 (131) T ss_dssp SCCCHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHH T ss_conf 799999999999999999999 No 89 >1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1 Probab=20.74 E-value=25 Score=11.80 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=38.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CHHHHHHHHC----------------CCCCEEEEE Q ss_conf 24767899999999999998988730453046612322210----0035544315----------------556248998 Q gi|254780191|r 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTK----------------YNDRVRVVS 680 (898) Q Consensus 621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~----~ga~alfgek----------------ygd~VRVV~ 680 (898) ||+--+||++||. +.|+.+|..+..+-+++.+....+. .+...+||+. .++-||+|- T Consensus 16 fSylP~lt~~~I~---~QV~yll~qG~~i~iE~ad~~~~~~~yW~mw~lPmf~~~d~~~Vl~ele~c~~~~p~~YVRlig 92 (110) T 1svd_M 16 FSYLPPMNAERIR---AQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVA 92 (110) T ss_dssp TTTSCCCCHHHHH---HHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSEEEEEE T ss_pred CCCCCCCCHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 0258999999999---9999999789985688612677777763114788757889999999999999989987799999 Q ss_pred EC Q ss_conf 44 Q gi|254780191|r 681 VE 682 (898) Q Consensus 681 I~ 682 (898) |+ T Consensus 93 ~D 94 (110) T 1svd_M 93 YD 94 (110) T ss_dssp EE T ss_pred EE T ss_conf 80 No 90 >2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} SCOP: e.28.1.1 Probab=20.66 E-value=26 Score=11.79 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=29.7 Q ss_pred CCCCCCCCCCC-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCCCCC Q ss_conf 76653101757-----9999999887985300576999999999730---678543 Q gi|254780191|r 219 LPKMSIDTGMG-----LERMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEG 266 (898) Q Consensus 219 Lp~~~IDTGmG-----LERl~~vlqg~~s~ydtD~f~pii~~i~~~~---g~~y~~ 266 (898) -....+|+=+| .=|+-..|||---+=..+.|+.-+..++.+. ++.|.. T Consensus 197 ~~~~~vDv~~~A~~D~vYrVH~~L~~yIe~~Q~~~~R~s~~WL~~lg~~Kri~~~~ 252 (901) T 2btv_A 197 VATRDVDVFIGACSEPIYRIYNRLQGYIEAVQLQELRNSIGWLERLGQRKRITYSQ 252 (901) T ss_dssp SSSSCEEEEECCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEECC T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 56661023303577079999999999997513899999999999976522654577 No 91 >2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} Probab=20.40 E-value=16 Score=13.28 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=4.9 Q ss_pred EEEECCCCEEECCC Q ss_conf 99973752000368 Q gi|254780191|r 512 EVVFDQTPFYAEAG 525 (898) Q Consensus 512 ~ivLd~T~FY~E~G 525 (898) -.||+-+.=.-.+. T Consensus 89 Tyvl~G~l~H~DS~ 102 (256) T 2vec_A 89 NVILDGEAEYRDSE 102 (256) T ss_dssp EEEEESEEEEEETT T ss_pred EEEEEEEEEEECCC T ss_conf 99977799981289 No 92 >1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A Probab=20.37 E-value=26 Score=11.75 Aligned_cols=31 Identities=13% Similarity=0.366 Sum_probs=24.5 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 89999876650774435888999999999764 Q gi|254780191|r 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRA 429 (898) Q Consensus 398 ~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~s 429 (898) +||+..+|+|.|-+ ++-+=|...|+.-|... T Consensus 19 ldlvrkvaeengrs-~nseiy~rvmes~kreg 49 (53) T 1baz_A 19 LDLVRKVAEENGRS-VNSEIYQRVMESFKKEG 49 (53) T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCC T ss_conf 99999999981863-03999999999998725 No 93 >1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1 Probab=20.35 E-value=26 Score=11.74 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=25.8 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 899998766507744358889999999997644 Q gi|254780191|r 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430 (898) Q Consensus 398 ~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr 430 (898) +||+..+|+|.|-+ ++-+=|...|+.-|...| T Consensus 19 ldlvrkvaeengrs-~nseiy~rvmes~kregr 50 (64) T 1nla_A 19 LDLVRKVAEENGRS-VNSEIYQRVMESFKKEGR 50 (64) T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCC T ss_conf 99999999981863-039999999999987365 No 94 >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Probab=20.24 E-value=22 Score=12.34 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 7699999999973067854 Q gi|254780191|r 247 DLFKHLIQASEQVTGMKYE 265 (898) Q Consensus 247 D~f~pii~~i~~~~g~~y~ 265 (898) +++.-++.+|-...|+... T Consensus 106 ~~~~v~~HEiGHaLGL~Hs 124 (365) T 3ba0_A 106 NLFLTAVHEIGHSLGLGHS 124 (365) T ss_dssp ESSHHHHHHHHHHHTCCCC T ss_pred EEEEEEEEHHHHHCCCCCC T ss_conf 5787751013222057888 No 95 >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Probab=20.21 E-value=22 Score=12.22 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.9 Q ss_pred HHHHHHHHHHCCC Q ss_conf 1255677752013 Q gi|254780191|r 576 DYQNRRQLSINHS 588 (898) Q Consensus 576 D~~rR~~~~~~HT 588 (898) |.+-|..|.++|. T Consensus 202 ~~~~r~~i~~~~l 214 (499) T 2dhr_A 202 DVKGREQILRIHA 214 (499) T ss_dssp CHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999983 No 96 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=20.15 E-value=26 Score=11.71 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=6.6 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 887565766531017 Q gi|254780191|r 213 KQERFILPKMSIDTG 227 (898) Q Consensus 213 ~g~~~~Lp~~~IDTG 227 (898) -+++.|-|.++.-+| T Consensus 30 ~~~~~~~~~~~~~~~ 44 (464) T 1m1j_B 30 APTLRPVAPPISGTG 44 (464) T ss_dssp --------------- T ss_pred CCCCCCCCCCCCCCC T ss_conf 888898899968888 Done!