Query         gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 898
No_of_seqs    260 out of 2790
Neff          6.2 
Searched_HMMs 23785
Date          Mon May 23 13:34:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780191.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zze_A Alanyl-tRNA synthetase; 100.0       0       0 1699.8  37.6  626    2-729    57-752 (752)
  2 2ztg_A Alanyl-tRNA synthetase; 100.0       0       0 1642.4  35.6  615    2-730    60-739 (739)
  3 1yfs_A Alanyl-tRNA synthetase; 100.0       0       0 1408.0  20.3  455    1-465     2-460 (465)
  4 3hy0_A Alanyl-tRNA synthetase; 100.0       0       0 1369.2  28.9  429    2-434     2-440 (441)
  5 3kew_A DHHA1 domain protein; s 100.0       0       0  392.3  17.7  221  487-735    15-235 (241)
  6 2e1b_A PH0108, 216AA long hypo 100.0       0       0  379.1  13.2  185  512-726    29-214 (216)
  7 1v4p_A Alanyl-tRNA synthetase; 100.0   2E-28 8.4E-33  239.8  12.1  144  581-729     3-152 (157)
  8 2zvf_A Alanyl-tRNA synthetase;  99.9 4.6E-22 1.9E-26  189.9  14.9  163  727-898     1-168 (171)
  9 3g98_A Alanyl-tRNA synthetase;  99.8 1.3E-18 5.3E-23  163.0   8.4  109  787-897     2-110 (111)
 10 1nyr_A Threonyl-tRNA synthetas  99.0 6.5E-10 2.7E-14   94.8   8.2  148  585-739    73-236 (645)
 11 1tke_A Threonyl-tRNA synthetas  99.0 2.8E-08 1.2E-12   81.9  13.7  137  583-727    69-222 (224)
 12 1qf6_A THRRS, threonyl-tRNA sy  98.9 1.9E-08   8E-13   83.3  12.0  137  585-729    71-224 (642)
 13 1j5w_A Glycyl-tRNA synthetase   98.2   3E-05 1.3E-09   58.2  11.9  172    2-246    13-189 (298)
 14 2rhq_A Phenylalanyl-tRNA synth  93.8   0.089 3.7E-06   31.0   5.1  210    4-263    55-290 (294)
 15 3dsq_A Pyrrolysyl-tRNA synthet  93.2    0.19 7.8E-06   28.5   5.9  101    4-114    73-199 (288)
 16 1nnh_A Asparaginyl-tRNA synthe  92.2    0.31 1.3E-05   26.8   6.0   89    5-102    19-127 (294)
 17 3a5y_A GENX, putative lysyl-tR  91.7    0.11 4.7E-06   30.2   3.3   95    5-115    40-156 (345)
 18 3l4g_A Phenylalanyl-tRNA synth  91.4   0.084 3.5E-06   31.2   2.4   10  582-591   322-331 (508)
 19 2zin_A Pyrrolysyl-tRNA synthet  88.0     1.2 4.9E-05   22.3   6.0   26    5-30     81-106 (291)
 20 2du3_A O-phosphoseryl-tRNA syn  87.7     0.5 2.1E-05   25.2   4.0   25  669-697   405-429 (534)
 21 2odr_B Phosphoseryl-tRNA synth  85.3       1 4.2E-05   22.8   4.5   53  170-243   296-354 (648)
 22 2odr_A Phosphoseryl-tRNA synth  85.2       1 4.3E-05   22.7   4.5   53  170-243   296-354 (665)
 23 3a74_A Lysyl-tRNA synthetase;   84.0    0.43 1.8E-05   25.6   2.1   17  585-601   172-188 (493)
 24 2odr_D Phosphoseryl-tRNA synth  81.5     1.8 7.5E-05   20.9   4.5   28  707-734   471-498 (685)
 25 2odr_C Phosphoseryl-tRNA synth  81.5     1.7   7E-05   21.1   4.3   27  708-734   472-498 (701)
 26 2wkb_A Macrophage migration in  80.7     1.6 6.6E-05   21.3   4.0   31  102-132    72-102 (125)
 27 3fwu_A Macrophage migration in  79.9     1.7 7.3E-05   20.9   4.0   30  102-131    93-122 (133)
 28 3fwt_A Macrophage migration in  79.6     1.7 7.2E-05   21.0   3.9   29  102-130    93-121 (133)
 29 3b64_A Macrophage migration in  79.2     1.9 7.9E-05   20.7   4.0   28  104-131    74-101 (112)
 30 2os5_A Acemif; macrophage migr  78.2     1.8 7.5E-05   20.9   3.6   30  104-133    74-103 (119)
 31 2xcz_A Possible ATLS1-like lig  77.7     2.1 8.9E-05   20.3   3.9   29  103-131    73-101 (115)
 32 2du7_A O-phosphoseryl-tRNA syn  76.9    0.92 3.9E-05   23.1   1.8   41  196-245   303-349 (549)
 33 3dev_A SH1221; alpha-beta prot  76.1     2.3 9.5E-05   20.0   3.7   80  805-898   234-314 (320)
 34 2zxr_A Single-stranded DNA spe  75.7     3.3 0.00014   18.8  11.7   30   98-133    78-109 (666)
 35 3dma_A Exopolyphosphatase-rela  75.4     2.3 9.8E-05   19.9   3.6   81  809-898   258-343 (343)
 36 1dpt_A D-dopachrome tautomeras  75.0     2.8 0.00012   19.3   3.9   36   97-132    63-102 (117)
 37 1uiz_A MIF, macrophage migrati  74.2       3 0.00012   19.1   3.9   28  105-132    75-102 (115)
 38 1hfo_A Migration inhibitory fa  72.5     3.4 0.00014   18.6   3.9   28  105-132    74-101 (113)
 39 3djh_A Macrophage migration in  72.1     3.4 0.00014   18.7   3.7   27  106-132    75-101 (114)
 40 1b7y_A Phers, protein (phenyla  71.3     1.3 5.6E-05   21.8   1.5   17  626-642   227-244 (350)
 41 2i7u_A Four-alpha-helix bundle  68.2     2.5  0.0001   19.7   2.4   45  854-898    17-61  (62)
 42 3i7f_A Aspartyl-tRNA synthetas  68.1     1.4 5.7E-05   21.8   1.0   78   59-154    35-121 (548)
 43 1l0w_A Aspartyl-tRNA synthetas  66.8     1.2 4.9E-05   22.3   0.4   15  631-645   250-264 (580)
 44 1e1o_A Lysyl-tRNA synthetase;   63.6     1.4 5.8E-05   21.7   0.3   10  592-601   188-197 (504)
 45 1c0a_A Aspartyl tRNA synthetas  62.3     1.6 6.7E-05   21.2   0.4   10  634-643   247-256 (585)
 46 3m4p_A Ehasnrs, asparaginyl-tR  61.7     1.6 6.9E-05   21.1   0.4   10   37-46      5-14  (456)
 47 1mww_A Hypothetical protein HI  57.8     6.9 0.00029   16.3   3.0   28  103-130    75-102 (128)
 48 2kw7_A Conserved domain protei  56.6     7.3 0.00031   16.0  10.7   92  793-896    48-146 (157)
 49 3ej9_A Alpha-subunit of trans-  48.9     9.4  0.0004   15.2   3.0   29  103-131    17-45  (76)
 50 1wjw_A Phosphoacetylglucosamin  48.3     9.6  0.0004   15.1   5.8   67  805-874    39-106 (112)
 51 1mji_A 50S ribosomal protein L  47.1     8.2 0.00035   15.7   2.0   33  565-600    82-114 (182)
 52 2ebd_A 3-oxoacyl-[acyl-carrier  43.8      11 0.00047   14.6   3.0   13  671-683   286-298 (309)
 53 1dny_A Non-ribosomal peptide s  40.9      12 0.00051   14.3   2.3   23  137-164    20-42  (91)
 54 2jgp_A Tyrocidine synthetase 3  40.3      12 0.00052   14.2   2.3   24  136-164    15-38  (520)
 55 2p1m_A SKP1-like protein 1A; F  40.3       7  0.0003   16.2   0.8   33  612-645   128-160 (160)
 56 2arh_A Hypothetical protein AQ  39.3      13 0.00054   14.1   3.1   19  243-261    79-97  (203)
 57 2gia_B MRP1, mitochondrial RNA  39.0      13 0.00053   14.2   2.0   49  548-603   101-149 (187)
 58 2di4_A Zinc protease, cell div  37.6     4.3 0.00018   17.9  -0.6   51  347-397   155-205 (238)
 59 3fia_A Intersectin-1; EH 1 dom  37.4      12 0.00052   14.2   1.7   47  378-424    45-94  (121)
 60 1eak_A 72 kDa type IV collagen  36.2      14  0.0006   13.8   3.5   49  587-638   361-413 (421)
 61 2prs_A High-affinity zinc upta  35.9     7.4 0.00031   16.0   0.4   82  739-820   130-223 (284)
 62 3e1y_E Eukaryotic peptide chai  33.6      16 0.00066   13.5   3.0   32  485-516    41-72  (204)
 63 1bxn_I Rubisco, protein (ribul  33.3      16 0.00066   13.4   7.0   92  621-720     8-121 (139)
 64 3m21_A Probable tautomerase HP  32.3      16 0.00068   13.3   1.7   28  103-130    19-46  (67)
 65 1eaq_A RUNT-related transcript  30.8       7  0.0003   16.2  -0.4   18   72-89     84-101 (140)
 66 3cx3_A Lipoprotein; zinc-bindi  30.6      12  0.0005   14.4   0.7  200  588-820    15-226 (284)
 67 1ydo_A HMG-COA lyase; TIM-barr  30.1      18 0.00074   13.0   4.2   28  696-725   205-232 (307)
 68 2flt_A CIS-3-chloroacrylic aci  29.5      18 0.00076   13.0   4.2   27  103-129    78-104 (149)
 69 2roq_A Enterobactin synthetase  29.3      16 0.00067   13.4   1.2   25  135-164    21-45  (343)
 70 3gpu_A DNA glycosylase; DNA gl  29.0     7.8 0.00033   15.8  -0.4   24  624-647   191-214 (256)
 71 1z7m_A ATP phosphoribosyltrans  28.5      19 0.00079   12.9   2.9   18  874-891   319-336 (344)
 72 3f6t_A Aspartate aminotransfer  27.8      19 0.00081   12.8   3.9   34  303-339   100-135 (533)
 73 1emz_A Envelope glycoprotein E  27.5      17  0.0007   13.2   1.0   12   87-98     10-21  (26)
 74 2yy0_A C-MYC-binding protein;   27.2      20 0.00083   12.7   1.9   22  753-774    28-49  (53)
 75 3od1_A ATP phosphoribosyltrans  27.1      20 0.00083   12.7   3.9   24    5-28     28-51  (400)
 76 1p9b_A Adenylosuccinate synthe  25.2     4.8  0.0002   17.5  -2.1   66  270-338   117-185 (442)
 77 3gi1_A LBP, laminin-binding pr  24.4      10 0.00043   14.9  -0.5  195  588-819    17-227 (286)
 78 1ag7_A Conotoxin GS; neurotoxi  24.4      18 0.00075   13.0   0.7   13   62-77     22-34  (34)
 79 1zow_A 3-oxoacyl-[acyl-carrier  23.8      22 0.00094   12.2   3.0   13  671-683   288-300 (313)
 80 2rh3_A Protein VIRC2; ribbon-h  23.6      23 0.00095   12.2   1.9   35  390-429    71-105 (121)
 81 2oa5_A Hypothetical protein BQ  23.2      23 0.00096   12.2   2.7   26  750-775     7-32  (110)
 82 1jb0_D Photosystem 1 reaction   23.2      18 0.00076   12.9   0.6   15  542-556    81-95  (138)
 83 2dla_A 397AA long hypothetical  23.1      11 0.00046   14.6  -0.6  137  222-373    31-192 (222)
 84 1bwv_S Rubisco, protein (ribul  22.8      23 0.00098   12.1   5.0   94  621-720     8-121 (138)
 85 2kgr_A Intersectin-1; structur  21.9      24   0.001   12.0   1.0   48  377-424    26-76  (111)
 86 2x1d_A Acyl-coenzyme A\:6-amin  21.8      24   0.001   12.0   4.4   44  300-343    20-68  (357)
 87 1m1j_C Fibrinogen gamma chain;  21.4      25   0.001   11.9   4.8   20  315-334    15-34  (409)
 88 2aal_A Malonate semialdehyde d  20.9      25  0.0011   11.8   3.4   21  625-645    10-30  (131)
 89 1svd_M Ribulose bisphosphate c  20.7      25  0.0011   11.8   5.4   59  621-682    16-94  (110)
 90 2btv_A T2A, T2B, protein (VP3   20.7      26  0.0011   11.8   1.8   48  219-266   197-252 (901)
 91 2vec_A YHAK, pirin-like protei  20.4      16 0.00069   13.3  -0.1   14  512-525    89-102 (256)
 92 1baz_A ARC repressor; transcri  20.4      26  0.0011   11.7   3.5   31  398-429    19-49  (53)
 93 1nla_A Transcriptional repress  20.3      26  0.0011   11.7   3.5   32  398-430    19-50  (64)
 94 3ba0_A Macrophage metalloelast  20.2      22 0.00091   12.3   0.5   19  247-265   106-124 (365)
 95 2dhr_A FTSH; AAA+ protein, hex  20.2      22 0.00095   12.2   0.5   13  576-588   202-214 (499)
 96 1m1j_B Fibrinogen beta chain;   20.1      26  0.0011   11.7   8.1   15  213-227    30-44  (464)

No 1  
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00  E-value=0  Score=1699.79  Aligned_cols=626  Identities=27%  Similarity=0.464  Sum_probs=571.3

Q ss_pred             CCHHHHHHHHHHHHHHC---CCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH
Q ss_conf             78789999999999978---9889116675667787100230143475540-0588799999851115432248987863
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL   77 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~---~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl   77 (898)
                      +|++|||++||+||++|   ||++||||||||+||||||||||||+||||| |+|.++||++|+|+||||||+    |||
T Consensus        57 ~~~~eiR~~fl~fF~~~~~~gH~~i~~~pvvp~~~~~llft~Agm~~Fkp~v~~G~~~pp~~~l~~sQ~CiR~----nDl  132 (752)
T 2zze_A           57 YTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDI  132 (752)
T ss_dssp             CCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----TTG
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC----CCH
T ss_conf             8999999999998386888997387147837799998246603664355721578768999972455200003----747


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEE
Q ss_conf             43464885001788854223147-----5378899989986133418981237999718828999975663499989975
Q gi|254780191|r   78 DNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII  152 (898)
Q Consensus        78 d~VG~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~  152 (898)
                      ||||+|+||||||||||||||||     |||+|||+|||||||++||+||++|+                          
T Consensus       133 dnVG~t~rH~T~FEMlGn~sFg~~~~~~Y~k~e~i~~~~e~lt~~lgi~~~~i~--------------------------  186 (752)
T 2zze_A          133 DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--------------------------  186 (752)
T ss_dssp             GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--------------------------
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECHHHCC--------------------------
T ss_conf             655788764055760412512899701769999999999975212342576615--------------------------


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCC------------CCCCC
Q ss_conf             357866654579999987704678853855689888777889826896001123443047887------------56576
Q gi|254780191|r  153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------------RFILP  220 (898)
Q Consensus       153 ~~~~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~------------~~~Lp  220 (898)
                         .+||||+||  |||||||||||                  |+|||||||||||+++.+|.            |.|||
T Consensus       187 ---~~en~W~~G--G~~GPc~Ei~~------------------~glEi~nlVFmq~~~~~~g~~~~~~~~~~~~~~~~Lp  243 (752)
T 2zze_A          187 ---FKENPWAGG--GNAGPAFEVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPME  243 (752)
T ss_dssp             ---EEECCEEET--TEEECEEEEEE------------------TTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEE
T ss_pred             ---CCCCCCCCC--CCCCCCEEEEE------------------CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ---545766589--89988756887------------------1444210001002558888756542334530146688


Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---------------------------------
Q ss_conf             65310175799999998879853005769999999997306785433---------------------------------
Q gi|254780191|r  221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------------------------------  267 (898)
Q Consensus       221 ~~~IDTGmGLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~---------------------------------  267 (898)
                      +|+||||||||||||++||+||||||| |.++|+.+.+.+|+.+.++                                 
T Consensus       244 ~k~VDTGmGLERl~~vlQg~~t~Ydtd-~~~~i~~l~~~~gi~~~~~~~~~~~~~~~g~~di~~~~~~~~~~~~va~~~~  322 (752)
T 2zze_A          244 TXVVDTGYGLERLVWMSQGTPTAYDAV-LGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVG  322 (752)
T ss_dssp             EEEEEEEEEHHHHHHHHHCCSSHHHHH-SHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCHHCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHC
T ss_conf             786588878999999982899702213-4123455665315442104677655554276560110017789999988738


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             -----------502489999989899998740333344464125778899999999984874331045689999986455
Q gi|254780191|r  268 -----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA  336 (898)
Q Consensus       268 -----------~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~  336 (898)
                                 ...++||||||+||++|||+|||+|||+|||||||||||||+||+++||++.| |++||+.+++.|++.
T Consensus       323 ~~~~~~~~~~~~~~~~~vIaDH~Ral~f~I~DGv~PSN~grGYvlRrilRRA~r~~~~lg~~~~-l~~lv~~~i~~m~~~  401 (752)
T 2zze_A          323 ITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVP-LSEIVALHIXELHKT  401 (752)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHTTT
T ss_pred             CCHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHH
T ss_conf             8803210112554441374308999999986578534455327899999999999986288676-899999999998545


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             555576467889999874898999999899999999861154--642457437998524588889999876650774435
Q gi|254780191|r  337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID  414 (898)
Q Consensus       337 ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~--~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~~vD  414 (898)
                      ||||.++++.|.++|+.||++|.+||++|+++|++.+++.++  .+.|||++||+||||||||+|||++||+|+|+. ||
T Consensus       402 ypeL~~~~~~I~~ii~~EEe~F~~TL~~G~~~l~~~i~~~~~~~~~~i~ge~aF~LYDTyGfP~Dlt~eiA~E~g~~-VD  480 (752)
T 2zze_A          402 FPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVK-VN  480 (752)
T ss_dssp             CTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCC-CC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCE-EC
T ss_conf             86878648999999999999999999987999999997631001356668899999871599889999999872646-30


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             8-889999999997644433110012013567888730488626434444432111222111344454455565534899
Q gi|254780191|r  415 I-ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK  493 (898)
Q Consensus       415 ~-~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~  493 (898)
                      + ..|++.|++|++++|+.+.....      ........++|++++|+....                    ...+++|+
T Consensus       481 ~~~~f~~~~~~~~~~~k~~~~~~~~------~~~~~~~l~~t~~l~y~~~~~--------------------~e~~a~V~  534 (752)
T 2zze_A          481 IPDNFYSMVAKEAERTKEEKGEELV------DFELLKDLPDTRRLYYEDPFM--------------------XEFDAXVL  534 (752)
T ss_dssp             CCTTHHHHHHGGGGCC-------CC------CSSSSSSSCCCEEHHHHCTTC--------------------CEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHCCCCCEEEECCCEE--------------------EEEEEEEE
T ss_conf             1457889999999999863455421------212233146641221011124--------------------56788899


Q ss_pred             EEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEE
Q ss_conf             99747813200047976999973752000368765665145404248985224565533899851046787556733888
Q gi|254780191|r  494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL  573 (898)
Q Consensus       494 ~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~  573 (898)
                      .+..+             +||||+||||||||||++|+|+|..++..+.|.++++. +++++|.+ ...+.+.+|++|.+
T Consensus       535 ~i~~~-------------~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~v~~~~~~-~~~i~h~~-~~~~~l~~G~~V~~  599 (752)
T 2zze_A          535 RVIXD-------------WVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXV-GXVIIHXV-EDPGAFXEGMIVHG  599 (752)
T ss_dssp             EEETT-------------EEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEE-TTEEEEEE-SCGGGCCTTCEEEE
T ss_pred             EEECC-------------EEECCCCEECCCCCCCCCCEEEEECCCCEEEEEEEECC-CCCEEECC-CCCCCCCCCCEEEE
T ss_conf             86505-------------26436740233358988850368404633653222105-74023112-22686588998999


Q ss_pred             EEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             42125567775201368899999752125444445530024300000247678999999999999989887304530466
Q gi|254780191|r  574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI  653 (898)
Q Consensus       574 ~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~  653 (898)
                      +|||+||..+|+|||||||||+|||++||+||+|+||+|+++++||||+|++++|+|||.+||++||++|++|+||++.+
T Consensus       600 ~ID~~rR~~~mr~HTAtHLL~~alr~vlG~hv~Q~Gs~v~~d~~R~Df~~~~~lt~eel~~IE~~vN~~I~~~~~V~~~~  679 (752)
T 2zze_A          600 XIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEW  679 (752)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             71587899999855799999999999868873014675069827998518999999999999999999998589168997


Q ss_pred             ECCCCCCCCHHHHHH--HHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECH
Q ss_conf             123222100035544--3155562489984476778553101562225886460110011012126882899997168
Q gi|254780191|r  654 MNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ  729 (898)
Q Consensus       654 ~~~~eA~~~ga~alf--gekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~  729 (898)
                      +++++|++.+++++|  |++|+++||||+|+     ++|+|+||||||.||||||.|+|++++++++|+|||+|+||+
T Consensus       680 ~~~~ea~~~~~~~l~~~g~~~~~~vRvV~I~-----~~d~e~CGGTHV~nT~eIg~~kI~~~~~i~~Gv~RI~~v~Ge  752 (752)
T 2zze_A          680 LPRTTAEQXYGFRLYQGGVVPGREIRVVXIE-----DWDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE  752 (752)
T ss_dssp             EEHHHHHHHHCGGGCSSCCCCSSEEEEEEET-----TTEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEC-----CEEECCCCCCCCCCHHHCCCEEEEEEEEECCCCEEEEEEECC
T ss_conf             5799998669820024888889827999989-----935465787030149768856999887686995899998187


No 2  
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00  E-value=0  Score=1642.36  Aligned_cols=615  Identities=28%  Similarity=0.464  Sum_probs=559.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHC
Q ss_conf             78789999999999978988911667566778710023014347554005-88799999851115432248987863434
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVRAGGKHNDLDNV   80 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~-G~~~p~~~r~~~~QkCiR~ggkhnDld~V   80 (898)
                      +|++|||++||+||++|||++||||||||+||||||||||||+||||||+ |.++||++|+|+||||||+    ||||||
T Consensus        60 ~~~~eiR~~fl~FF~~~gH~~i~s~pvvp~~d~~llft~Agm~~Fkp~~~~G~~~pp~~~l~~sQkCiR~----nDld~V  135 (739)
T 2ztg_A           60 FELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDLDSV  135 (739)
T ss_dssp             CCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECG----GGGGGT
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCHHCHHHHCCCCCCCCCCCCCCCCCCEEC----CCHHHC
T ss_conf             8899999999999987898780785828899998467605741061655198668998871455351213----768762


Q ss_pred             CCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECC
Q ss_conf             64885001788854223147-----5378899989986133418981237999718828999975663499989975357
Q gi|254780191|r   81 GRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT  155 (898)
Q Consensus        81 G~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~  155 (898)
                      |+|+||||||||||||||||     |||+|||.|||||||+ +|+||++                          |++  
T Consensus       136 G~t~rH~TfFEMlGn~SFg~~~k~~Yfk~e~i~~~~e~l~~-lGi~~~~--------------------------i~~--  186 (739)
T 2ztg_A          136 GRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNE-LGVKKED--------------------------IVY--  186 (739)
T ss_dssp             TTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHH-HTCCGGG--------------------------CEE--
T ss_pred             CCCCCCCHHEEECCCEECCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHH--------------------------CCC--
T ss_conf             98887630003566503189757777788999999999998-3998999--------------------------014--


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCC-------CCCCCCCCCCCC
Q ss_conf             8666545799999877046788538556898887778898268960011234430478875-------657665310175
Q gi|254780191|r  156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-------FILPKMSIDTGM  228 (898)
Q Consensus       156 ~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~-------~~Lp~~~IDTGm  228 (898)
                       +||||+||  ||||||+|||||                  ++||||||||||+++++|++       .|||+++|||||
T Consensus       187 -~e~~W~~g--G~~GPc~E~~~~------------------glEi~nlVFmq~~~~~~G~~e~~~~~~~~lp~~~VDTG~  245 (739)
T 2ztg_A          187 -KEEPWAGG--GNAGPCLEAIVG------------------GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGY  245 (739)
T ss_dssp             -EEEEEEET--TEEEEEEEEEET------------------TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEE
T ss_pred             -CCCCCCCC--CCCCCCCCCCCC------------------CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -56752248--996488421338------------------600021001014548998702365445767886416774


Q ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------
Q ss_conf             79999999887985300576999999999730678543350---------------------------------------
Q gi|254780191|r  229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------------------------------------  269 (898)
Q Consensus       229 GLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~~~---------------------------------------  269 (898)
                      ||||++|++||+|||||| +|.|+++.+.+.+++.|..+++                                       
T Consensus       246 GLER~~~v~qg~pt~Yd~-~f~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  324 (739)
T 2ztg_A          246 GLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSV  324 (739)
T ss_dssp             EHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCH
T ss_pred             CHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf             156665420798884434-3257899999860887676225566668877765176664330257777543444227776


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ----------2489999989899998740333344464125778899999999984874331045689999986455555
Q gi|254780191|r  270 ----------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE  339 (898)
Q Consensus       270 ----------~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~ype  339 (898)
                                .++||||||+||++|||+|||+|||+|||||||||||||+||+++||+..+ |++||+.+++.|   |||
T Consensus       325 ~~~~~~~~~~~~~rvIADH~Ra~~f~IaDGv~PSN~GrGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~~~~---~~e  400 (739)
T 2ztg_A          325 EELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLD-LYDLVEMHKKIL---GFE  400 (739)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSC-HHHHHHHHHHHH---CCC
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHH---CCH
T ss_conf             7740123431001214289888898860575567677428999999999987655066522-788999888773---212


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCH-HHH
Q ss_conf             5764678899998748989999998999999998611546424574379985245888899998766507744358-889
Q gi|254780191|r  340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI-ISF  418 (898)
Q Consensus       340 L~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~~vD~-~~f  418 (898)
                      +.++++.|++||..||++|.+||++|+++|++++++   ++.+||++||+||||||||+|||++||+|+|+. ||+ ++|
T Consensus       401 ~~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~---~~~l~g~~af~LyDTyGfP~Dlt~eia~e~g~~-vd~~~~f  476 (739)
T 2ztg_A          401 FDVPLSTVQEILELEKERYRTTVSKGTRLVERLVER---KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAE-VEMPKDI  476 (739)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSBCCHHHHHHHHHHHCCCHHHHHHHHHHTTCB-CCCCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHH
T ss_conf             566788899999999999999998777788887510---367786777647750698889999998864021-0230799


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             99999999764443311001201356788873048862643444443211122211134445445556553489999747
Q gi|254780191|r  419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ  498 (898)
Q Consensus       419 ~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~i~~~  498 (898)
                      +..|++|++++++.....         .++....+.|++++|+.....                    .+.++|+.+.. 
T Consensus       477 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~t~~~~y~~~~~~--------------------~~~a~v~~~~~-  526 (739)
T 2ztg_A          477 YAELAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLL--------------------EFEAEVIGVEG-  526 (739)
T ss_dssp             HHHHHHTTSBCCCCCCCC---------CCCSSCCCCCEECTTTCTTCC--------------------EEEEEEEEEET-
T ss_pred             HHHHHHHHHHHHHHHCCC---------EEEECCCCCCEEEECCCCCEE--------------------EEEEEEEECCC-
T ss_conf             999999887877630354---------475025666311210453023--------------------31114662036-


Q ss_pred             CCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHH
Q ss_conf             81320004797699997375200036876566514540424898522456553389985104678755673388842125
Q gi|254780191|r  499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ  578 (898)
Q Consensus       499 ~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~  578 (898)
                                  ..||||+||||||||||++|+|+|..++..+.|.+|++. +++++|..  ..+.+.+|++|.+.|||+
T Consensus       527 ------------~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~V~~v~k~-~~~~~h~~--~~~~~~~G~~V~~~ID~~  591 (739)
T 2ztg_A          527 ------------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEA-DGVVLHVV--KGAKPEVGTKVKGVIDSD  591 (739)
T ss_dssp             ------------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEE-TTEEEEEC--CSSCCCTTCEEEEEECHH
T ss_pred             ------------CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC-CCEEEEEC--CCCCCCCCCCHHHCCCHH
T ss_conf             ------------479984454455779977874579726964789877642-87544311--477555575234202288


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             56777520136889999975212544444553002430000024767899999999999998988730453046612322
Q gi|254780191|r  579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED  658 (898)
Q Consensus       579 rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~e  658 (898)
                      ||..+|+|||||||||+|||++||.||+|+||+|+++++||||+|++++|+|+|.+||++||++|++|+||++.+|+++|
T Consensus       592 rR~~~mr~HTAtHLL~~alr~vlG~hv~Q~Gs~v~~~~~r~Df~~~~~ls~eel~~IE~~vN~~I~~~~~V~~~~~~~~e  671 (739)
T 2ztg_A          592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIE  671 (739)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf             99999986089999999999984865200776536883688646888999999999999999999809987999769999


Q ss_pred             CCCCHHHHHH--HHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECHH
Q ss_conf             2100035544--31555624899844767785531015622258864601100110121268828999971689
Q gi|254780191|r  659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR  730 (898)
Q Consensus       659 A~~~ga~alf--gekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~~  730 (898)
                      |++.+++++|  |++|+++||||+||      .|+|+||||||.|||+||.|||++++++++|+|||||+||++
T Consensus       672 a~~~~~~~~~~~~~~~~~~vRvV~IG------~d~e~CGGTHV~nT~eIg~~kI~~~~~i~~Gv~RIe~v~G~A  739 (739)
T 2ztg_A          672 AERKFGFRLYQGGVPPGRKIRVVQVG------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA  739 (739)
T ss_dssp             HHHHHCGGGGTTCCCCSSEEEEEEET------TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESCC
T ss_pred             HHHCCCHHHCCCCCCCCCCEEEEEEC------CCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCEEEEEEEECC
T ss_conf             98667812204899989828999969------850568870201097456979999876748828999983079


No 3  
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00  E-value=0  Score=1408.02  Aligned_cols=455  Identities=46%  Similarity=0.831  Sum_probs=432.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHC
Q ss_conf             97878999999999997898891166756677871002301434755400588799999851115432248987863434
Q gi|254780191|r    1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNV   80 (898)
Q Consensus         1 m~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~V   80 (898)
                      .||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||++|+|+||||||+||||||||||
T Consensus         2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~V   81 (465)
T 1yfs_A            2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV   81 (465)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             98899999999999986899885887867899997300003443150233589899988854666363358876546650


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCC
Q ss_conf             64885001788854223147537889998998613341898123799971882899997566349998997535786665
Q gi|254780191|r   81 GRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNF  160 (898)
Q Consensus        81 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNf  160 (898)
                      |+|+|||||||||||||||||||+|||.|||||||++|+||++|||||||++|+|++++|.+.+|||++||++++.+|||
T Consensus        82 G~t~rH~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~~~i~~~~~~dNf  161 (465)
T 1yfs_A           82 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF  161 (465)
T ss_dssp             TTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHCEECCCCCCC
T ss_conf             88887512322055411587437889999999876650678665379982760788899998609987882304755672


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             45799999877046788538556898887778898268960011234430478875657665310175799999998879
Q gi|254780191|r  161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK  240 (898)
Q Consensus       161 W~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~  240 (898)
                      |+||++||||||||||||+|+.+        ++++|||||||||||||+|++||+|.|||+||||||||||||+|++||+
T Consensus       162 W~~g~~GpcGPcsEi~yd~~~~~--------~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~  233 (465)
T 1yfs_A          162 WQMGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGK  233 (465)
T ss_dssp             EESSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCEEEEECCCCCC--------CCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             31799988877525786367766--------8987779860002431125799888567776456584199999998378


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             853005769999999997306785433--502489999989899998740333344464125778899999999984874
Q gi|254780191|r  241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT  318 (898)
Q Consensus       241 ~s~ydtD~f~pii~~i~~~~g~~y~~~--~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~  318 (898)
                      +||||||+|.|+|+++++++|++|...  .++|+||||||+||++|||+|||+|||+|||||||||||||+||+++||++
T Consensus       234 ~s~ydtd~f~~li~~~~~~~~~~~~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRrllRRA~r~~~~Lg~~  313 (465)
T 1yfs_A          234 NSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIE  313 (465)
T ss_dssp             SSGGGSTTTHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             87556387899999999985887544544550145650320210244227705326687448999999999998875156


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCC
Q ss_conf             33104568999998645555557646788999987489899999989999999986115--4642457437998524588
Q gi|254780191|r  319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL  396 (898)
Q Consensus       319 ~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~--~~~~lsg~~af~LyDTyGf  396 (898)
                      .|||++||+.+++.|++.||||.++++.|.+||+.||++|.+||++|++++++.++++.  +++.|||++||+|||||||
T Consensus       314 ~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EEerF~~TL~~G~~~l~~~i~~~~~~~~~~lsge~aF~LYDTyGf  393 (465)
T 1yfs_A          314 NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGF  393 (465)
T ss_dssp             SCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf             31799999999999876545555418999999999999999999989999999999987448981787986532425899


Q ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             889999876650774435888999999999764443311001201356788873048862643444443
Q gi|254780191|r  397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG  465 (898)
Q Consensus       397 P~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~  465 (898)
                      |+|||++||+|+|++ ||+++|+++|++||++||++++...... ...+..+.+...+|+|+||+.++.
T Consensus       394 P~Dlt~eia~e~gi~-VD~~gF~~~m~eqkerSr~a~k~~~~~~-~~~~~~l~~~~~~TeFvGY~~lE~  460 (465)
T 1yfs_A          394 PVDLIDEIAREKGLG-IDLEGFQCELEEQRERARKHFKVEAKKV-KPVYSHLKELGKTSAFVGAAALEH  460 (465)
T ss_dssp             CHHHHHHHHHTTTCE-ECHHHHHHHHHHHHHTTTTC----------CCCCCTTCHHHHTTSBCGGGC--
T ss_pred             CHHHHHHHHHHCCCE-ECHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHCCCCCEEECCHHHCC
T ss_conf             999999999986896-5399999999999999986434575330-568999973489963878154234


No 4  
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00  E-value=0  Score=1369.17  Aligned_cols=429  Identities=54%  Similarity=0.944  Sum_probs=416.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC
Q ss_conf             78789999999999978988911667566778710023014347554005887999998511154322489878634346
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG   81 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~VG   81 (898)
                      +|++|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++||++|+|+||||||||||||||||||
T Consensus         2 ~s~~eiR~~Fl~FF~~~gH~~v~s~~vvp~~d~~llft~Agm~~Fkp~f~G~~~p~~~rl~~sQkCiR~ggkhnDld~VG   81 (441)
T 3hy0_A            2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG   81 (441)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             77899999999999868988848878678999973110045343246654999999997314341623689877787728


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCC---
Q ss_conf             4885001788854223147537889998998613--34189812379997188289999756634999899753578---
Q gi|254780191|r   82 RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT---  156 (898)
Q Consensus        82 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt--~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~---  156 (898)
                      +|+|||||||||||||||||||+|||.|||||||  ++|+|||+|||||||++|+||+++|.+.+|+|+++|++++.   
T Consensus        82 ~t~rH~TfFEMlGn~SFgdyfK~eai~~awe~lt~~~~~~l~~~rl~vtv~~~D~ea~~~w~~~~gi~~~~i~~~~~~~~  161 (441)
T 3hy0_A           82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG  161 (441)
T ss_dssp             TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCHHHHHHHHHCCCCCHHHEEECCCCCC
T ss_conf             88862576875412144884678899999998602320020575369996636778899999727987462898676566


Q ss_pred             ----CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             ----666545799999877046788538556898887-778898268960011234430478875657665310175799
Q gi|254780191|r  157 ----NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE  231 (898)
Q Consensus       157 ----~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~-~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE  231 (898)
                          +||||+||++||||||||||||+|+++.++.++ .+++|+||+||||+|||||+|+.||+|.|||+||||||||||
T Consensus       162 ~~~~~dNfW~~G~~GPcGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~dG~l~~Lp~k~IDTGmGLE  241 (441)
T 3hy0_A          162 APYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE  241 (441)
T ss_dssp             BTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCHH
T ss_conf             56534463215898688886689994365246899998776676135662265310003589976346765532242599


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999887985300576999999999730678543350248999998989999874033334446412577889999999
Q gi|254780191|r  232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY  311 (898)
Q Consensus       232 Rl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~y~~~~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~  311 (898)
                      |++|++||++||||||+|.|||+++++++|..|..  +.|+||||||+||++|||+|||+|||+|||||||||||||+|+
T Consensus       242 Rl~~vlqg~~s~ydtD~f~~ii~~i~~~~g~~~~~--~~a~rvIaDH~Ra~~f~i~DGv~PSN~grGYvlRrliRRa~r~  319 (441)
T 3hy0_A          242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS--NKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRH  319 (441)
T ss_dssp             HHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCTT--CHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999718996410030899999999985998666--6236654310033103453787678668740144999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             99848743310456899999864555555764678899998748989999998999999998611546424574379985
Q gi|254780191|r  312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY  391 (898)
Q Consensus       312 ~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~Ly  391 (898)
                      +++||++.|||++|++.+++.|++.||||.++++.|.+||+.||++|.+||++|+++|++.+++.+ ++.|||++||+||
T Consensus       320 ~~~Lg~~~~~l~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~-~~~i~g~~~f~Ly  398 (441)
T 3hy0_A          320 GNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLY  398 (441)
T ss_dssp             HHHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCC-SSEECHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHEEEE
T ss_conf             998289740666534688887653495045688999999999999999999999999999998637-9947868840030


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2458888999987665077443588899999999976444331
Q gi|254780191|r  392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL  434 (898)
Q Consensus       392 DTyGfP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~  434 (898)
                      ||||||+|||++||+|+|++ ||+++|+++|++||++||++++
T Consensus       399 DTyGfP~dlt~~ia~e~g~~-vD~~~F~~~m~~qk~~sr~ask  440 (441)
T 3hy0_A          399 DTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREASG  440 (441)
T ss_dssp             HHHCCCHHHHHHHHHTTTCE-ECHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHCCCE-ECHHHHHHHHHHHHHHHHHHCC
T ss_conf             27899999999999987891-6599999999999999897678


No 5  
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens atcc 13124}
Probab=100.00  E-value=0  Score=392.33  Aligned_cols=221  Identities=23%  Similarity=0.335  Sum_probs=192.8

Q ss_pred             CCCEEEEEEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCC
Q ss_conf             55348999974781320004797699997375200036876566514540424898522456553389985104678755
Q gi|254780191|r  487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR  566 (898)
Q Consensus       487 ~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~  566 (898)
                      .++++|+.+..+         ++.++||||+|||||||||||+|+|+|.+    +.|.+|++. +|.++|.+   ++.+.
T Consensus        15 ~~~a~V~~v~~~---------~~~~~vild~TiFyp~gGGQp~D~G~i~~----~~V~~v~~~-~g~i~H~~---~~~~~   77 (241)
T 3kew_A           15 EFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHVL---EKEPK   77 (241)
T ss_dssp             EEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEETT----EEEEEEEEE-TTEEEEEE---SSCCC
T ss_pred             EEEEEEEEEEEC---------CCEEEEEEECCCCEECCCCCCCCCEEEEE----EEEEEEEEE-CCEEEEEE---CCCCC
T ss_conf             789999999952---------99089999588514188997884214736----899999988-99999986---55778


Q ss_pred             CCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             67338884212556777520136889999975212544444553002430000024767899999999999998988730
Q gi|254780191|r  567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN  646 (898)
Q Consensus       567 ~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n  646 (898)
                      .|++|.++|||+||..+|++|||+|||++|+++++|.++  .|+.+.++++|+||+  ..+++++|.+||+.+|++|++|
T Consensus        78 ~g~~v~~~ID~~~R~~~~~~HTA~Hll~~al~~~~g~~~--~g~~~~~~~~~id~~--~~~~~e~l~~ie~~~n~iI~~~  153 (241)
T 3kew_A           78 KLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEISTVDIV--GFLDEKTIREAEKEANRLIFEN  153 (241)
T ss_dssp             CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHC
T ss_conf             652599999478823366546588998764443058511--145578533454555--6688778888899999999868


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEE
Q ss_conf             45304661232221000355443155562489984476778553101562225886460110011012126882899997
Q gi|254780191|r  647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI  726 (898)
Q Consensus       647 ~~V~~~~~~~~eA~~~ga~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeav  726 (898)
                      +||++.+++.+||++.+....+ .++++.||||+|++     +|.++||||||.||+|||.|+|++.++. +|.+||+|+
T Consensus       154 ~~v~~~~~~~~e~~~~~~~~~~-~~~~~~iRvV~Ig~-----~d~~pCgGTHV~~T~eIg~~~I~~~~~~-~~~~RI~~~  226 (241)
T 3kew_A          154 LEVKSYAPSKKELKKVKTRRAL-PKTDEEIRIVEIVG-----LDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYV  226 (241)
T ss_dssp             CBEEEECCCTTTTTTCCCSSCC-CCCSSCCCEEEETT-----TEEEECCSCCCSBSGGGCCEEEEEEEEE-TTEEEEEEE
T ss_pred             CCCCEEEEEHHHHHHHHHHCCC-CCCCCCEEEEEECC-----EEECCCCCCCCCCHHHCCCEEEEEEEEC-CCEEEEEEE
T ss_conf             9865898520123334442147-65689658999898-----5851899987787723067899999962-995999999


Q ss_pred             ECHHHHHHH
Q ss_conf             168999999
Q gi|254780191|r  727 TGQRARSHL  735 (898)
Q Consensus       727 tG~~A~~~~  735 (898)
                      ||++|++.-
T Consensus       227 aG~~Ai~~~  235 (241)
T 3kew_A          227 AGNRAVSEG  235 (241)
T ss_dssp             EGGGGC---
T ss_pred             ECHHHHHHC
T ss_conf             878998506


No 6  
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00  E-value=0  Score=379.13  Aligned_cols=185  Identities=29%  Similarity=0.386  Sum_probs=167.2

Q ss_pred             EEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHH
Q ss_conf             99973752000368765665145404248985224565533899851046787556733888421255677752013688
Q gi|254780191|r  512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH  591 (898)
Q Consensus       512 ~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatH  591 (898)
                      .|+||+|||||||||||+|+|+|.+    ..|+++.+..+|.++|.+.. .+.+.+|++|.++|||+||+.+|++|||+|
T Consensus        29 ~vvld~TiFypegGGQp~D~G~I~~----~~~~~~~~~~~g~i~H~~~~-~~~~~~G~~V~~~iD~~~R~~~~~~HTa~H  103 (216)
T 2e1b_A           29 AILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLH  103 (216)
T ss_dssp             CCCBSCCCSCCCCTTCCCCCEEETT----EEEEEEECCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCEEEEEE----EEEEEEEECCCCEEEEEECC-CCCCCCCCEEEEEECHHHHHHHHHHCHHHH
T ss_conf             8999588656886996896478945----69999997489739985424-799898999999999899787987686989


Q ss_pred             HHHHHHHHCCCCCCCC-CCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             9999975212544444-553002430000024767899999999999998988730453046612322210003554431
Q gi|254780191|r  592 LLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT  670 (898)
Q Consensus       592 lL~~alr~vLG~hv~Q-~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~alfge  670 (898)
                      ||++|+++++|.+++| .||.+.++++||||+++..++++ ..+||..+|++|.++.||.+.+                 
T Consensus       104 ll~~a~~~~~g~~~~~~~g~~~~~~~~~~d~~~~~~l~~~-~~~ie~~~n~~I~~~~~v~~~~-----------------  165 (216)
T 2e1b_A          104 LLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNKYVDEGGEVKIWW-----------------  165 (216)
T ss_dssp             HHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHHHHHHCCBEEEEE-----------------
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHH-HHHHHHHHHHHHCCCCEEEEEE-----------------
T ss_conf             8888878644887631146651344442116403368589-9999999987531484688985-----------------


Q ss_pred             CCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEE
Q ss_conf             55562489984476778553101562225886460110011012126882899997
Q gi|254780191|r  671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI  726 (898)
Q Consensus       671 kygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeav  726 (898)
                        .+.+|+|+|++     ++.++||||||+||+|||.|+|++.+++++|+||||+.
T Consensus       166 --~~~~Rvv~I~~-----~~~~~CgGTHV~~T~eIg~i~I~~~~~~~kg~~Rie~~  214 (216)
T 2e1b_A          166 --EGDRRYTQIRD-----FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW  214 (216)
T ss_dssp             --SSSCEEEEETT-----SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred             --CCCEEEEEECC-----EEEEECCCCCCCCHHHCCCEEEEEEEEEECCCEEEEEE
T ss_conf             --49768888898-----89870388056868754388999998693894889999


No 7  
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A
Probab=99.96  E-value=2e-28  Score=239.77  Aligned_cols=144  Identities=21%  Similarity=0.233  Sum_probs=126.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             7775201368899999752125444445-530024300000247678999999999999989887304530466123222
Q gi|254780191|r  581 RQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA  659 (898)
Q Consensus       581 ~~~~~~HTatHlL~~alr~vLG~hv~Q~-GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA  659 (898)
                      ...||+|||+|||++|++++||.++.|. |+.+++++.|+||++..++++|+|.+||+.+|++|++|+||++.++++++|
T Consensus         3 ~~~mR~HTa~Hll~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~iE~~~n~~I~~~~~V~~~~~~~eea   82 (157)
T 1v4p_A            3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA   82 (157)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH
T ss_conf             63388899999999999998485760453010347750799866888887799999999999998478743897389999


Q ss_pred             CCCHHHHHH-HHCCCC---CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC-CCCCCCEEEEEEECH
Q ss_conf             100035544-315556---2489984476778553101562225886460110011012-126882899997168
Q gi|254780191|r  660 IASGAAALL-GTKYND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAITGQ  729 (898)
Q Consensus       660 ~~~ga~alf-gekygd---~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~-si~sGvRRIeavtG~  729 (898)
                      .+.....++ ...+++   .||||.|++     |++++||||||.|||+||.|+|++.+ +.++|++||+|-.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~iRiv~i~~-----~d~~~CgGTHV~~T~eIg~ikI~~~~~~~~kg~~Ri~f~l~~  152 (157)
T 1v4p_A           83 EKMFGEDMYDLFPVPEDVRILKVVVIED-----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE  152 (157)
T ss_dssp             HHHHGGGGSCSSCCCTTCCEEEEEEETT-----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred             HHHHCCCCCCCCCCCCCCCCEEEEECCC-----EEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCEEEEEEECC
T ss_conf             9751722221002455566316872388-----479799998759785663199989854321784899999627


No 8  
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.89  E-value=4.6e-22  Score=189.94  Aligned_cols=163  Identities=20%  Similarity=0.301  Sum_probs=140.3

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCEEEEEE
Q ss_conf             168999999999999999999839998899999999999999999999999999876365-----355536952799995
Q gi|254780191|r  727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII  801 (898)
Q Consensus       727 tG~~A~~~~~~~~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~-----~~~~i~~~~~i~~~~  801 (898)
                      .|.+|++|+++.++.++++++.|++++++++++|++|+++++++++++.+++.+......     .+..+++++++... 
T Consensus         1 ~G~~A~~~~~~~~~~l~~is~~L~~~~~~l~~~i~~l~~e~k~l~k~~~~l~~~~~~~~~~~l~~~~~~i~~~~vv~~~-   79 (171)
T 2zvf_A            1 MGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEV-   79 (171)
T ss_dssp             -CGGGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEEE-
T ss_conf             9279999999999999999999798989999999999999999999999999999999877776461677899888610-


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC
Q ss_conf             79997899999999997549978999995389817999986778972679899999999883499999981011458999
Q gi|254780191|r  802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN  881 (898)
Q Consensus       802 ~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgGG~~  881 (898)
                      .+.|+++||.+++.++++  ..+++|++ ..++++.+++.+++    +++|++|++.+++.+ ||+|||||+||||||++
T Consensus        80 ~~~d~~~lr~l~~~l~~~--~~~~vl~~-~~~~k~~v~~~~~~----~i~A~~ivk~~~~~~-~GkGGG~~~~AQggg~~  151 (171)
T 2zvf_A           80 VDADMQALQKLAERLAEK--GAVGCLMA-KGEGKVFVVTFSGQ----KYDARELLREIGRVA-KGSGGGRKDVAQGAVQQ  151 (171)
T ss_dssp             CSCCHHHHHHHHHHHHHT--TEEEEEEE-ECSSSEEEEEEESS----SSCHHHHHHHHHHHH-TEECCBCSSEEEEEESS
T ss_pred             CCCCHHHHHHHHHHHHCC--CCEEEEEE-CCCCCEEEEECCCC----CCCHHHHHHHHHHHC-CCCCCCCHHHEEECCCC
T ss_conf             589989999999998444--77389774-26885257750667----778999999999873-99878966870347998


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             87889999999998619
Q gi|254780191|r  882 GNKADQAIAGVASFLKK  898 (898)
Q Consensus       882 ~~~l~eal~~vk~~Lke  898 (898)
                      +++++++++.++++|++
T Consensus       152 ~~~~~~~l~~~~~~l~~  168 (171)
T 2zvf_A          152 LLDREEMLDVIFRFLSE  168 (171)
T ss_dssp             CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             67899999999999987


No 9  
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.76  E-value=1.3e-18  Score=163.00  Aligned_cols=109  Identities=28%  Similarity=0.520  Sum_probs=101.1

Q ss_pred             HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             35553695279999579997899999999997549978999995389817999986778972679899999999883499
Q gi|254780191|r  787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG  866 (898)
Q Consensus       787 ~~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GG  866 (898)
                      ..+++++++++...+++.|+++||.+++.++++.++.+++|++. .++|+.+++++++++.++++|++|++++++.+ ||
T Consensus         2 k~e~ig~~~~i~~~~~~~d~~~Lr~l~d~l~~~~~~~vvil~s~-~~~k~~iv~~vs~~~~~~~~A~~lvk~~~~~i-gG   79 (111)
T 3g98_A            2 KEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEISDKVNAKEVIREVGKVL-KG   79 (111)
T ss_dssp             EEEEETTEEEEEEEEESCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGGTTTSCHHHHHHHHHHHT-TB
T ss_pred             CEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCEEEEEEECHHHHCCCCHHHHHHHHHHHH-CC
T ss_conf             50898899999999769998999999999985349849999994-29947999998557626764999999999982-97


Q ss_pred             CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9999810114589998788999999999861
Q gi|254780191|r  867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK  897 (898)
Q Consensus       867 gGGGkpd~AQgGG~~~~~l~eal~~vk~~Lk  897 (898)
                      +|||||+||||||++++++++||+.++++|+
T Consensus        80 ~GGGk~~~AQgGG~~~~~l~~al~~~~~~l~  110 (111)
T 3g98_A           80 GGGGRADLAQGGGKAPDKFPEAVKLLKEILS  110 (111)
T ss_dssp             CCEECSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             6568960015289987889999999999837


No 10 
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.04  E-value=6.5e-10  Score=94.79  Aligned_cols=148  Identities=23%  Similarity=0.395  Sum_probs=104.4

Q ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH-
Q ss_conf             2013688999997521254444455300243000002476789999999999999898873045304661232221000-
Q gi|254780191|r  585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-  663 (898)
Q Consensus       585 ~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g-  663 (898)
                      -.||+.|||..|++++++..----|. +-.+-+-.||....++|+++|..||+.++++|.+|+|++...++.++|.+.. 
T Consensus        73 ~~~S~a~ll~~A~~~~~p~~~~~i~~-~~~~Gfy~d~~~~~~~t~~dl~~ie~~m~~ii~~~~~i~~~~~~~~eA~~~F~  151 (645)
T 1nyr_A           73 LRHSTAHLMAHAIKRLYGNVKFGVGP-VIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFS  151 (645)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEECCCC-EETTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHC
T ss_conf             99999999999999977997799788-65887999983699999999999999999998658972799837999999860


Q ss_pred             ----HHHHHHHCC-CCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCC-C------CCCCEEEEEEECH--
Q ss_conf             ----355443155-5624899844767785531015622258864601100110121-2------6882899997168--
Q gi|254780191|r  664 ----AAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-I------RAGIRRIEAITGQ--  729 (898)
Q Consensus       664 ----a~alfgeky-gd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~s-i------~sGvRRIeavtG~--  729 (898)
                          -..+..+.. ++.|-+...++     | +.+|-|.||.|||.|+.||+++.++ .      ..-+.||..++=+  
T Consensus       152 ~~~~k~e~i~~~~~~~~v~~y~~g~-----f-~dl~~Gp~v~~t~~i~~~kl~~~~~~yw~g~~~~~~l~riyg~a~~~~  225 (645)
T 1nyr_A          152 NDEYKLELIDAIPEDENVTLYSQGD-----F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK  225 (645)
T ss_dssp             SCHHHHHHHCCCSSSCCCEEEEETT-----E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH
T ss_pred             CCHHHHHHHHHCCCCCCEEEEEECC-----E-EEECCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCEEEEEEEEECCCH
T ss_conf             6715799996377998169999788-----8-885377557875322200355404453158863700378998861899


Q ss_pred             -HHHHHHHHHH
Q ss_conf             -9999999999
Q gi|254780191|r  730 -RARSHLMGQD  739 (898)
Q Consensus       730 -~A~~~~~~~~  739 (898)
                       ...+|+...+
T Consensus       226 ~~l~~~~~~~~  236 (645)
T 1nyr_A          226 KELKAHLQMLE  236 (645)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 11 
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.95  E-value=2.8e-08  Score=81.92  Aligned_cols=137  Identities=20%  Similarity=0.359  Sum_probs=98.2

Q ss_pred             HHHCCCHHHHHHHHHHHCCCCC-CCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             7520136889999975212544-444553002430000024767899999999999998988730453046612322210
Q gi|254780191|r  583 LSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA  661 (898)
Q Consensus       583 ~~~~HTatHlL~~alr~vLG~h-v~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~  661 (898)
                      -.-.||+.|||.+|++++++.. +. -| +.-.+-+-.||....+++++++..||+.+.++|.+|+|+....++.++|.+
T Consensus        69 ~iy~rS~a~lL~~Av~~l~p~~~l~-~~-~si~~gfy~d~~~~~~~~~edl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~  146 (224)
T 1tke_A           69 EIIRHSCAHLLGHAIKQLWPHTKMA-IG-PVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARE  146 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEEC-CC-CEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEE-EC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf             9999999999999999858995663-37-867884489605567889899999999999998728982599972999999


Q ss_pred             CHH-------HHHHHHC--CCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCC-C----CCC--CEEEEE
Q ss_conf             003-------5544315--55624899844767785531015622258864601100110121-2----688--289999
Q gi|254780191|r  662 SGA-------AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-I----RAG--IRRIEA  725 (898)
Q Consensus       662 ~ga-------~alfgek--ygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~s-i----~sG--vRRIea  725 (898)
                      ...       ..++.+.  ..+.|-+-..|+      =..+|-|.||.|||.|+.|++++.++ .    ++.  ..||..
T Consensus       147 ~f~~~~~~~K~~ll~~~~~~~~~v~~Y~~g~------~~D~~~Gp~vpsTg~ik~F~L~~~sgayw~gd~~n~~LqRiyG  220 (224)
T 1tke_A          147 TFANRGESYKVSILDENIAHDDKPGLYFHEE------YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG  220 (224)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTCCCEEEEETT------EEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred             HHHHCCCHHHHHHHHHHCCCCCCEEEEECCC------EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf             9987335078899875255677435896798------8997488756877876258973783054679987811078999


Q ss_pred             EE
Q ss_conf             71
Q gi|254780191|r  726 IT  727 (898)
Q Consensus       726 vt  727 (898)
                      +|
T Consensus       221 ~a  222 (224)
T 1tke_A          221 TA  222 (224)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             97


No 12 
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.92  E-value=1.9e-08  Score=83.26  Aligned_cols=137  Identities=20%  Similarity=0.368  Sum_probs=94.9

Q ss_pred             HCCCHHHHHHHHHHHCCCC-CCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf             2013688999997521254-444455300243000002476789999999999999898873045304661232221000
Q gi|254780191|r  585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG  663 (898)
Q Consensus       585 ~~HTatHlL~~alr~vLG~-hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g  663 (898)
                      -.||+.|||.+|+.++++. ++.- |-.++ +-+=.||.-..++|+++|.+||+.++++|.+|+|+....++.++|.+..
T Consensus        71 ~~~S~a~vl~~Av~~l~p~~kl~i-gp~i~-~Gfyyd~~~~~~~t~~dl~~Ie~~M~~ii~~~~~i~r~~~~~~~A~~~f  148 (642)
T 1qf6_A           71 IRHSCAHLLGHAIKQLWPHTKMAI-GPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF  148 (642)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEECC-CCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEE-CCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
T ss_conf             999999999999999769987997-78658-8789997149999999999999999999732586279997578999987


Q ss_pred             H-------HHHHHHC--CCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC-------CCCCEEEEEEE
Q ss_conf             3-------5544315--556248998447677855310156222588646011001101212-------68828999971
Q gi|254780191|r  664 A-------AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT  727 (898)
Q Consensus       664 a-------~alfgek--ygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si-------~sGvRRIeavt  727 (898)
                      .       ..+..+.  ..+.|-+-..++     | +.+|-|.||.|||.|+.||+++.++-       ..-..||..++
T Consensus       149 ~~~~~~~k~~li~~~~~~~~~i~~y~~g~-----f-~Dlc~Gphvp~T~~ik~fkL~~~~~ayw~gd~~~~~l~Riyg~a  222 (642)
T 1qf6_A          149 ANRGESYKVSILDENIAHDDKPGLYFHEE-----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  222 (642)
T ss_dssp             HHHTCHHHHHHHHHHSCTTCCCEEEEETT-----E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             HHCCCCHHHHHHHCCCCCCCCEEEEECCC-----E-EEECCCCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf             63135045666530356676337996287-----7-98448877898766621467531312765887236767677664


Q ss_pred             CH
Q ss_conf             68
Q gi|254780191|r  728 GQ  729 (898)
Q Consensus       728 G~  729 (898)
                      =.
T Consensus       223 f~  224 (642)
T 1qf6_A          223 WA  224 (642)
T ss_dssp             CS
T ss_pred             HC
T ss_conf             16


No 13 
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=98.20  E-value=3e-05  Score=58.25  Aligned_cols=172  Identities=23%  Similarity=0.331  Sum_probs=101.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH---
Q ss_conf             787899999999999789889116675667787100230143475540-0588799999851115432248987863---
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL---   77 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl---   77 (898)
                      |+..+|-.+--+|+.++|+.++.++.+=         +.||  .|-|. |+..--|.--+++-+|||.|-    .|=   
T Consensus        13 m~fq~~i~~L~~fW~~~GC~i~qpyd~e---------vGAg--T~~P~T~lr~lgp~pw~~aYvqPsrRP----~DgRYG   77 (298)
T 1j5w_A           13 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGAG--TFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYG   77 (298)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSSG--GGSHHHHTGGGCSSCEEEEEEEEEECC----C-----
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCC----CCCCCC
T ss_conf             2299999999999987796887675542---------4646--688899986319876326642467799----988767


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCC-HHHEEECCC
Q ss_conf             4346488500178885422314753788999899861334189812379997188289999756634999-899753578
Q gi|254780191|r   78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLS-ADKIIRITT  156 (898)
Q Consensus        78 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~-~~~i~~~~~  156 (898)
                      +|--+ -.||.=|.-+=-=|..+                                =+|-|--=++.+||. .+|=++|- 
T Consensus        78 eNPNR-Lq~y~QfQVilKPsp~n--------------------------------~q~lYL~SL~~igid~~~hDIrFv-  123 (298)
T 1j5w_A           78 ENPNR-LQRYFQYQVIIKPSPEN--------------------------------SQELYLESLEYLGINLKEHDIRFV-  123 (298)
T ss_dssp             CCTTC-CSEEEEEEEEEESCCSS--------------------------------HHHHHHHHHHHTTCCTTTSCEEEE-
T ss_pred             CCCCH-HCEEEEEEEEECCCCHH--------------------------------HHHHHHHHHHHHCCCCCCCCEEEE-
T ss_conf             89323-11003458997789466--------------------------------899999999983999202144786-


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             66654579999987704678853855689888777889826896001123443047887565766531017579999999
Q gi|254780191|r  157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV  236 (898)
Q Consensus       157 ~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~v  236 (898)
                      +|| |+----|.-|--=||-.|                  ++||--.-..|   +-.|  .++.--.+.--|||||||+.
T Consensus       124 eDn-WEsPtLGAwGlGWEVwld------------------GMEItQFTYFQ---QvGG--i~c~pv~~EiTYGLERiaMy  179 (298)
T 1j5w_A          124 EDN-WESPTLGAWGVGWEVWLD------------------GMEITQFTYFQ---QIGG--ISLKDIPLEITYGLERIAMY  179 (298)
T ss_dssp             EEC-CEEGGGTEEEEEEEEEET------------------TEEEEEEEEEE---EBTT--BCCSSCCEEEEEEHHHHHHH
T ss_pred             ECC-CCCCCCCCEEEEEEEEEC------------------CEEEEEEEEEE---EECC--EECCCCCHHHHHHHHHHHHH
T ss_conf             227-778761211200599988------------------76875244031---1277--53344220100249999999


Q ss_pred             HCCCCCCCHH
Q ss_conf             8879853005
Q gi|254780191|r  237 LQEKTNNYDI  246 (898)
Q Consensus       237 lqg~~s~ydt  246 (898)
                      +|++.++||+
T Consensus       180 lQ~vdnv~Dl  189 (298)
T 1j5w_A          180 LQGVDNVYEV  189 (298)
T ss_dssp             HHTCSSGGGC
T ss_pred             HHCCCHHHCC
T ss_conf             8487335030


No 14 
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=93.77  E-value=0.089  Score=31.05  Aligned_cols=210  Identities=14%  Similarity=0.130  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHCCCEECCCCCC-----------CCCCCC-----CHHEEECCCC------CCCC-CCCCCCCCCCCC
Q ss_conf             7899999999999789889116675-----------667787-----1002301434------7554-005887999998
Q gi|254780191|r    4 VSSIRTTFLEFFQKNGHELLPSSSL-----------IPCNDP-----TLMFTNSGMV------PFKN-IFTGQEKPVYQA   60 (898)
Q Consensus         4 ~~eiR~~fl~fF~~~~H~~~~s~sl-----------vp~~d~-----~llft~Agm~------~fk~-~f~G~~~p~~~r   60 (898)
                      ++++++...++|.+.|-+++...-+           +|.+.|     +.++++..+.      +.+. ++.....+|-.|
T Consensus        55 l~~~~~~I~~if~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~~~~~~p~~  134 (294)
T 2rhq_A           55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVK  134 (294)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999977897164588410430576634889983020404518850352037768077899998515689838


Q ss_pred             CCCCCCCEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCC-HHHEEEEECCCHHHHHH
Q ss_conf             5111543224898786343464885001788854223147537-889998998613341898-12379997188289999
Q gi|254780191|r   61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK-ERAIQLAWDLLTKEFDLD-QRRLYITVYDEDEEAFK  138 (898)
Q Consensus        61 ~~~~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn~SfgdYfK-~eai~~awe~lt~~~~l~-~~~l~vtv~~~D~e~~~  138 (898)
                      +..+=+|.|     +|=    .++.|.-.|-++--+-.+.--. .+-....-.|+.+.++=+ .-|+--+||        
T Consensus       135 ~~~~G~VyR-----rD~----iDatH~p~FhQ~Eg~~v~~~~~~~~Lk~~l~~f~~~~f~~~~~~r~rpsyF--------  197 (294)
T 2rhq_A          135 IICPGKVYR-----RDS----DDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYF--------  197 (294)
T ss_dssp             EEEEEEEEC-----CCC----CBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHCTTCCEEEEECCB--------
T ss_pred             EEECCCEEE-----CCC----CCHHHCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC--------
T ss_conf             984684772-----687----873442222230159964787776644378899998706774589744658--------


Q ss_pred             HHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CCCCCCEEEEEEHHHHHHHCCCCCCCC
Q ss_conf             7566349998997535786665457999998770467885385568988877-788982689600112344304788756
Q gi|254780191|r  139 LWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERF  217 (898)
Q Consensus       139 iW~~~~gi~~~~i~~~~~~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~-~~~~~r~lEiwNlVFmq~~~~~~g~~~  217 (898)
                                                  .--=|..|+.+...   .|...+| -+....++||+..=-..=+-.....+-
T Consensus       198 ----------------------------PfTePs~Evdv~~~---~~~g~~~~v~~~~~WlEi~G~Gmv~P~VL~~~Gid  246 (294)
T 2rhq_A          198 ----------------------------PFTEPSVEVDVSCF---KCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFD  246 (294)
T ss_dssp             ----------------------------TTEEEEEEEEEECS---SSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCC
T ss_pred             ----------------------------CCCCCCCEEEEEEE---CCCCCCCEECCCCCCEEEEEECCCCHHHHHHCCCC
T ss_conf             ----------------------------54588622677762---04898741405887468863034278999972999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             5766531017579999999887985300576999999999730678
Q gi|254780191|r  218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK  263 (898)
Q Consensus       218 ~Lp~~~IDTGmGLERl~~vlqg~~s~ydtD~f~pii~~i~~~~g~~  263 (898)
                      |=.....--||||||||+++-|.+..=+  +|..=+..+++.-+++
T Consensus       247 ~~~~~G~AfGlGlERlAMl~~gI~DIR~--f~~~D~rfl~Qf~~~~  290 (294)
T 2rhq_A          247 SNEYSGFAFGMGPDRIAMLKYGIEDIRY--FYTNDVRFLEQFKAVE  290 (294)
T ss_dssp             TTTCEEEEEEECHHHHHHHHHTCCCTTH--HHHCCHHHHTTCCSCC
T ss_pred             CCCCEEEEEEECHHHHHHHHCCCCHHHH--HHHCCHHHHHHCCCCC
T ss_conf             6778799986338899999839975887--7626888998562532


No 15 
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=93.15  E-value=0.19  Score=28.53  Aligned_cols=101  Identities=16%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHCCCEECCCCCCC----------CCCCCCHH--EEECCCCCCCCCC-----------CCCCCCCCCC
Q ss_conf             78999999999997898891166756----------67787100--2301434755400-----------5887999998
Q gi|254780191|r    4 VSSIRTTFLEFFQKNGHELLPSSSLI----------PCNDPTLM--FTNSGMVPFKNIF-----------TGQEKPVYQA   60 (898)
Q Consensus         4 ~~eiR~~fl~fF~~~~H~~~~s~slv----------p~~d~~ll--ft~Agm~~fk~~f-----------~G~~~p~~~r   60 (898)
                      .++|.+...+||.++|...|..-.++          |.++|--.  |..-+-..++|..           .+..++| .|
T Consensus        73 ~~~l~~~ir~~~~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~~~~~~~~p-~r  151 (288)
T 3dsq_A           73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKP-IR  151 (288)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSC-EE
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHHHHCCCCC-EE
T ss_conf             99999999999998879899875265221553457654433022047637420134357717889999863014798-48


Q ss_pred             CCCCCCCEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHCC-CC--HHHHHHHHHHHH
Q ss_conf             5111543224898786343464885001788854223147-53--788999899861
Q gi|254780191|r   61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YF--KERAIQLAWDLL  114 (898)
Q Consensus        61 ~~~~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn~Sfgd-Yf--K~eai~~awe~l  114 (898)
                      +..+-+|.|.     +  ..|  .+|.--|-|++=+.+|. .-  -.+.+.++-++|
T Consensus       152 ~~~ig~vfR~-----E--~~~--~~h~~eFtQ~e~~~~~~~~~~~~~~l~~l~~~~l  199 (288)
T 3dsq_A          152 IFEIGTCYRK-----E--SQG--AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVL  199 (288)
T ss_dssp             EEEEEEEECS-----C--CSS--SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHH
T ss_pred             EEEECEEECC-----C--CCC--CCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             9996625556-----8--688--8867827773158986988999999999999999


No 16 
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=92.24  E-value=0.31  Score=26.84  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCCEECCCCCCC-CC---CCCCHHEEECCCCCCC------CCCCCCCC---------CCCCCCCCCC
Q ss_conf             8999999999997898891166756-67---7871002301434755------40058879---------9999851115
Q gi|254780191|r    5 SSIRTTFLEFFQKNGHELLPSSSLI-PC---NDPTLMFTNSGMVPFK------NIFTGQEK---------PVYQAVTTVQ   65 (898)
Q Consensus         5 ~eiR~~fl~fF~~~~H~~~~s~slv-p~---~d~~llft~Agm~~fk------~~f~G~~~---------p~~~r~~~~Q   65 (898)
                      ++|-+.+-+||.++|-.-|. -|++ |.   .++.  ....|.++|+      +++|-+.+         ....|+=..-
T Consensus        19 s~i~~~iR~ff~~~~f~EV~-tPil~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~Spql~~k~~l~~g~~~vf~I~   95 (294)
T 1nnh_A           19 TKILEYMTDFFVKEGFKWLL-PVIISPITDPLWPD--PAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS   95 (294)
T ss_dssp             HHHHHHHHHHHHHTTCEEEC-CCCEESCCCCCCSC--TTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999988999984-87345667776776--5567663563567896675157888889899873025644650


Q ss_pred             CCEECCCCCCCHHHCCCCCCCHHHHHHHH-HHHHCCCC
Q ss_conf             43224898786343464885001788854-22314753
Q gi|254780191|r   66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLG-NFSFGGYF  102 (898)
Q Consensus        66 kCiR~ggkhnDld~VG~t~rH~TfFEMlG-n~SfgdYf  102 (898)
                      ||.|+.    +.+.  .|.||.+=|-||= =.+|.||.
T Consensus        96 ~~FR~E----~~~~--~~~rH~~EFtmLE~e~~~~d~~  127 (294)
T 1nnh_A           96 PNIRLE----SRQK--DDGRHAYEFTQLDFEVERAKME  127 (294)
T ss_dssp             EEECCC----CGGG--CSSSCCSEEEEEEEEEETCCHH
T ss_pred             CEECCC----CCCC--CCCCCCCCCCCCEEEEECCHHH
T ss_conf             456478----7888--8775540014650598400198


No 17 
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=91.74  E-value=0.11  Score=30.24  Aligned_cols=95  Identities=19%  Similarity=0.224  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCC------------CCCCCCCC---------CCCCCCCC
Q ss_conf             8999999999997898891166756677871002301434755------------40058879---------99998511
Q gi|254780191|r    5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK------------NIFTGQEK---------PVYQAVTT   63 (898)
Q Consensus         5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk------------~~f~G~~~---------p~~~r~~~   63 (898)
                      ++|-+..-+||.++|-.-|..--|++...+     .|...+|+            +.+|-+.+         ....|+-.
T Consensus        40 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~-----ga~~~pf~~~~~~~~~~~~~~~yL~~SpQl~lq~l~~~g~~rVf~  114 (345)
T 3a5y_A           40 AAIMAEIRRFFADRGVLEVETPCMSQATVT-----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ  114 (345)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSEESSCCC-----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCC-----CCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEE
T ss_conf             999999999998889789879864788987-----645661688723666667857775548799999999679987279


Q ss_pred             CCCCEECCCCCCCHHHCCCCCCCHHHHHHHHH-HHHCCCCHHHHHHHHHHHHH
Q ss_conf             15432248987863434648850017888542-23147537889998998613
Q gi|254780191|r   64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN-FSFGGYFKERAIQLAWDLLT  115 (898)
Q Consensus        64 ~QkCiR~ggkhnDld~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt  115 (898)
                      .-||.|+.    +     .+.||++=|-||== .+|.||  ++.+...=+++.
T Consensus       115 I~p~FR~E----~-----~~~~H~~EFtmlE~e~a~~d~--~dlm~~~E~li~  156 (345)
T 3a5y_A          115 LCRSFRNE----E-----MGRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQ  156 (345)
T ss_dssp             EEEEECCC----C-----CBTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred             EECCCCCC----C-----CCCCCCCCEEEEEEEECCCCH--HHHHHHHHHHHH
T ss_conf             83453269----9-----898857634553443247999--999999999999


No 18 
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=91.45  E-value=0.084  Score=31.23  Aligned_cols=10  Identities=20%  Similarity=0.318  Sum_probs=4.2

Q ss_pred             HHHHCCCHHH
Q ss_conf             7752013688
Q gi|254780191|r  582 QLSINHSATH  591 (898)
Q Consensus       582 ~~~~~HTatH  591 (898)
                      .+.+.||..|
T Consensus       322 ~vLRtHtt~~  331 (508)
T 3l4g_A          322 NLLRTHTTSA  331 (508)
T ss_dssp             EEECCCTHHH
T ss_pred             CCCCCCCCCH
T ss_conf             3445788721


No 19 
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A*
Probab=88.02  E-value=1.2  Score=22.26  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHCCCEECCCCCCCC
Q ss_conf             89999999999978988911667566
Q gi|254780191|r    5 SSIRTTFLEFFQKNGHELLPSSSLIP   30 (898)
Q Consensus         5 ~eiR~~fl~fF~~~~H~~~~s~slvp   30 (898)
                      ++|.+..-+||.++|-..|..-.+.+
T Consensus        81 ~~i~~~ir~~f~~~Gf~EV~TP~l~~  106 (291)
T 2zin_A           81 GKLEREITRFFVDRGFLEIKSPILIP  106 (291)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCCSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf             99999999999988799997652233


No 20 
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=87.71  E-value=0.5  Score=25.16  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=13.8

Q ss_pred             HHCCCCCEEEEEECCCCCCCCCEECCCCC
Q ss_conf             31555624899844767785531015622
Q gi|254780191|r  669 GTKYNDRVRVVSVEYEDGGVHSSALCGGT  697 (898)
Q Consensus       669 gekygd~VRVV~I~~~d~~~~S~ElCGGT  697 (898)
                      |+-+|-.|+|.-++...+    .-|||..
T Consensus       405 g~~~~~~~~v~~~e~ee~----~~l~gpa  429 (534)
T 2du3_A          405 GEMMGRNVRVYVVEEEEN----TKLCGPA  429 (534)
T ss_dssp             EESSSSEEEEEEEECSSS----SBSSCTT
T ss_pred             EEEECEEEEEEEECCCCC----CCCCCHH
T ss_conf             065140689999656678----7665825


No 21 
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=85.34  E-value=1  Score=22.81  Aligned_cols=53  Identities=13%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             7704678853855689888777889826896001------1234430478875657665310175799999998879853
Q gi|254780191|r  170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN  243 (898)
Q Consensus       170 GPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~  243 (898)
                      |.|.+|+.+..            ...+++||...      |.-.|.         ++.+..=-||||||||++.-|.+..
T Consensus       296 g~ea~V~~~~~------------~~~~WlEIgg~G~vHP~VLk~~G---------Id~~V~AFGLGLERLAMlk~gi~DI  354 (648)
T 2odr_B          296 ETQTEVYAYHP------------KLKEWLEVATFGVYSPVALSKYG---------IDVPVMNLGLGVERLAMISGNFADV  354 (648)
T ss_dssp             TCCEEEEEEET------------TTTEEEEEEEEEEBCHHHHHHTT---------CCSCEEEEEEEHHHHHHHHTTCSCH
T ss_pred             CEEEEEEEEEC------------CCCEEEEEEECCCCCHHHHHHCC---------CCCCEEEEEECHHHHHHHHCCCCHH
T ss_conf             11589999816------------79848999806531799998669---------6985799996389999987399737


No 22 
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=85.19  E-value=1  Score=22.72  Aligned_cols=53  Identities=13%  Similarity=0.325  Sum_probs=36.4

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             7704678853855689888777889826896001------1234430478875657665310175799999998879853
Q gi|254780191|r  170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN  243 (898)
Q Consensus       170 GPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~  243 (898)
                      |.+.+|+.+..            ...+++||...      |.-.|.         ++.+..=-||||||||++.-|.+..
T Consensus       296 g~eaeV~~~~~------------k~~~WlEIgg~G~vhP~VLk~~G---------Id~~V~AFGLGLERLAMlk~gI~DI  354 (665)
T 2odr_A          296 ETQTEVYAYHP------------KLKEWLEVATFGVYSPVALSKYG---------IDVPVMNLGLGVERLAMISGNFADV  354 (665)
T ss_dssp             TCCEEEEEEET------------TTTEEEEEEEEEEBCHHHHHHTT---------CCSCEEEEEEEHHHHHHHHTTCSCH
T ss_pred             CEEEEEEEEEC------------CCCEEEEEEECCCCCHHHHHHCC---------CCCCEEEEEECHHHHHHHHCCCCHH
T ss_conf             40589999945------------69839999924430799998769---------7985799997589999987399768


No 23 
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=83.95  E-value=0.43  Score=25.64  Aligned_cols=17  Identities=12%  Similarity=0.184  Sum_probs=8.3

Q ss_pred             HCCCHHHHHHHHHHHCC
Q ss_conf             20136889999975212
Q gi|254780191|r  585 INHSATHLLHHALSTIL  601 (898)
Q Consensus       585 ~~HTatHlL~~alr~vL  601 (898)
                      .+.-..|.+-.++|+.|
T Consensus       172 ~~~~~Rs~i~~~iR~fl  188 (493)
T 3a74_A          172 KTFITRSLIIQSMRRYL  188 (493)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999


No 24 
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=81.52  E-value=1.8  Score=20.86  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             HHHEECCCCCCCCCEEEEEEECHHHHHH
Q ss_conf             1001101212688289999716899999
Q gi|254780191|r  707 LLYIVSESSIRAGIRRIEAITGQRARSH  734 (898)
Q Consensus       707 ~fkIise~si~sGvRRIeavtG~~A~~~  734 (898)
                      .++=..++++..|||=|+|++-..|.+-
T Consensus       471 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~  498 (685)
T 2odr_D          471 FLEKGKSEGVATGIRYIDALCFKITSKL  498 (685)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9998875597658275999999999999


No 25 
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=81.50  E-value=1.7  Score=21.07  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=17.3

Q ss_pred             HHEECCCCCCCCCEEEEEEECHHHHHH
Q ss_conf             001101212688289999716899999
Q gi|254780191|r  708 LYIVSESSIRAGIRRIEAITGQRARSH  734 (898)
Q Consensus       708 fkIise~si~sGvRRIeavtG~~A~~~  734 (898)
                      ++=..++++..|||=|+|++-..|.+-
T Consensus       472 ~~~~~~~~~~~~i~~~~~~~~~~~~~~  498 (701)
T 2odr_C          472 LEKGKSEGVATGIRYIDALCFKITSKL  498 (701)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             998875497658275999999999999


No 26 
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=80.75  E-value=1.6  Score=21.28  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCHHHEEEEECCC
Q ss_conf             3788999899861334189812379997188
Q gi|254780191|r  102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDE  132 (898)
Q Consensus       102 fK~eai~~awe~lt~~~~l~~~~l~vtv~~~  132 (898)
                      =+++.+.--.++|.+.||+|++|+||+++.-
T Consensus        72 ~n~~~s~~i~~~l~~~LgI~~~RiyI~f~~~  102 (125)
T 2wkb_A           72 NNSLLADKITKILSNHLSVKPRRVYIEFRDC  102 (125)
T ss_dssp             THHHHHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf             7899999999999997198902289999978


No 27 
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=79.90  E-value=1.7  Score=20.93  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCHHHEEEEECC
Q ss_conf             378899989986133418981237999718
Q gi|254780191|r  102 FKERAIQLAWDLLTKEFDLDQRRLYITVYD  131 (898)
Q Consensus       102 fK~eai~~awe~lt~~~~l~~~~l~vtv~~  131 (898)
                      =+++-..-..+||.+.||+|++|+||++++
T Consensus        93 ~n~~~s~~i~~~l~~~LgIp~~RiyI~f~d  122 (133)
T 3fwu_A           93 EPEKVTSIVTAAITKECGIVADRIFVLYFS  122 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             999999999999999739896739999980


No 28 
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=79.62  E-value=1.7  Score=21.00  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCHHHEEEEEC
Q ss_conf             37889998998613341898123799971
Q gi|254780191|r  102 FKERAIQLAWDLLTKEFDLDQRRLYITVY  130 (898)
Q Consensus       102 fK~eai~~awe~lt~~~~l~~~~l~vtv~  130 (898)
                      -+++-..--.+||.+.||+|++|+||++.
T Consensus        93 ~n~~~s~~i~~~l~~~LgIp~~RiYI~f~  121 (133)
T 3fwt_A           93 KPKMMTPRIAAAITKECGIPAERIYVFYY  121 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             89999999999999973989684999998


No 29 
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=79.23  E-value=1.9  Score=20.66  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHEEEEECC
Q ss_conf             8899989986133418981237999718
Q gi|254780191|r  104 ERAIQLAWDLLTKEFDLDQRRLYITVYD  131 (898)
Q Consensus       104 ~eai~~awe~lt~~~~l~~~~l~vtv~~  131 (898)
                      ++...--.+||.+.||+|++|+|++++.
T Consensus        74 ~~~s~~i~~~l~~~LgI~~~RiyI~f~d  101 (112)
T 3b64_A           74 EKVTSIVTAAITKECGIVADRIFVLYFS  101 (112)
T ss_dssp             HHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             9999999999999859796739999982


No 30 
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode, hookworm; 1.60A {Ancylostoma ceylanicum}
Probab=78.22  E-value=1.8  Score=20.85  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHEEEEECCCH
Q ss_conf             889998998613341898123799971882
Q gi|254780191|r  104 ERAIQLAWDLLTKEFDLDQRRLYITVYDED  133 (898)
Q Consensus       104 ~eai~~awe~lt~~~~l~~~~l~vtv~~~D  133 (898)
                      ++-+.-..++|.+.||+|++|.|+++++-+
T Consensus        74 ~~~s~~i~~~l~~~Lgi~~~riyI~f~~~~  103 (119)
T 2os5_A           74 IRHTQKITQFCQDTLKLPKDKVIITYFDLQ  103 (119)
T ss_dssp             HHHHHHHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             999999999999973979575999999789


No 31 
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=77.68  E-value=2.1  Score=20.26  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEEEECC
Q ss_conf             78899989986133418981237999718
Q gi|254780191|r  103 KERAIQLAWDLLTKEFDLDQRRLYITVYD  131 (898)
Q Consensus       103 K~eai~~awe~lt~~~~l~~~~l~vtv~~  131 (898)
                      +++-+.--.+++.+.||++++|+||++++
T Consensus        73 n~~~~~~i~~~l~~~Lgi~~~riyi~f~~  101 (115)
T 2xcz_A           73 TQEVSELVCGHIEQNLGIPADRIYIGFED  101 (115)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             89999999999999849595769999998


No 32 
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=76.91  E-value=0.92  Score=23.09  Aligned_cols=41  Identities=17%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             CEEEEEEH------HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH
Q ss_conf             26896001------123443047887565766531017579999999887985300
Q gi|254780191|r  196 RYIEIWNL------VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD  245 (898)
Q Consensus       196 r~lEiwNl------VFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~yd  245 (898)
                      .+|||...      |+-.+.-         +.+..--||||||||+++-|.+..=+
T Consensus       303 ~WlEIlGcGmv~P~VL~~~Gi---------d~~g~AfGlGlERLAMl~ygI~DIR~  349 (549)
T 2du7_A          303 EWIEVATFGVYSPIALAKYNI---------DVPVMNLGLGVERLAMIIYGYEDVRA  349 (549)
T ss_dssp             CSEEEEEEEEBCHHHHHHTTC---------CSCEEEEEEBHHHHHHHHTTCSCSHH
T ss_pred             EEEEEECCCCCCHHHHHHCCC---------CCCEEEEEECHHHHHHHHCCCCHHHH
T ss_conf             189995784778899985697---------98768987639999999729976776


No 33 
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.10A {Staphylococcus haemolyticus JCSC1435}
Probab=76.14  E-value=2.3  Score=20.02  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCC-CCCHH
Q ss_conf             97899999999997549978999995389817999986778972679899999999883499999981011458-99987
Q gi|254780191|r  805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG-GPNGN  883 (898)
Q Consensus       805 d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgG-G~~~~  883 (898)
                      .+.+.-.+++.+.+-.+..+.+++. ..++++.+.+. |    ++++++++++    .+ |  |||-| .|-|. -+..+
T Consensus       234 ~~~~~~~iv~~l~~i~g~~v~~~~~-~~~~~v~~S~R-S----~~~dv~~ia~----~~-g--GGGH~-~AAG~~i~~~~  299 (320)
T 3dev_A          234 QPNEASQFVNTVADISGLKIWMFGV-DEGDQIRCRIR-S----KGITINDVAN----QF-G--GGGHP-NASGVSVYSWD  299 (320)
T ss_dssp             CHHHHTTCGGGSTTBTTCCEEEEEE-ECSSSEEEEEE-E----SSSCCHHHHH----HT-T--CEEET-TEEEEEESSHH
T ss_pred             CCHHHHHHHHHHCCCCCEEEEEEEE-EECCEEEEEEE-C----CCCCHHHHHH----HH-C--CCCCH-HHCEEEECCCC
T ss_conf             7236789998855847659999999-98999999997-8----9979999998----81-9--96556-62488848843


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             889999999998619
Q gi|254780191|r  884 KADQAIAGVASFLKK  898 (898)
Q Consensus       884 ~l~eal~~vk~~Lke  898 (898)
                      .+++.++.+++.|.|
T Consensus       300 ~~~~~~~~l~~~l~e  314 (320)
T 3dev_A          300 EFEELAQALRQKLLE  314 (320)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             399999999999876


No 34 
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=75.69  E-value=3.3  Score=18.77  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=13.2

Q ss_pred             HCCCCHHHHHH--HHHHHHHHHCCCCHHHEEEEECCCH
Q ss_conf             14753788999--8998613341898123799971882
Q gi|254780191|r   98 FGGYFKERAIQ--LAWDLLTKEFDLDQRRLYITVYDED  133 (898)
Q Consensus        98 fgdYfK~eai~--~awe~lt~~~~l~~~~l~vtv~~~D  133 (898)
                      ||||==+-...  ..+++|.. +|.+     |.||-+|
T Consensus        78 ~GDYDvDGiTStaIL~~~L~~-lg~~-----v~~yIP~  109 (666)
T 2zxr_A           78 HGDYDADGLTGTAILVRGLAA-LGAD-----VHPFIPH  109 (666)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHH-TTCE-----EEECCC-
T ss_pred             EEECCCCHHHHHHHHHHHHHH-CCCC-----EEEECCC
T ss_conf             974684168999999999998-8996-----5998889


No 35 
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=75.36  E-value=2.3  Score=19.92  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC-H----H
Q ss_conf             9999999997549978999995389817999986778972679899999999883499999981011458999-8----7
Q gi|254780191|r  809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN-G----N  883 (898)
Q Consensus       809 Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~AQgGG~~-~----~  883 (898)
                      +..+++.+..-.+-.+.+++....+++..-+...|.   .+++.++++.   +.+ |  |||-|..|=+--+. .    .
T Consensus       258 ~~~~v~~l~~i~gv~~a~~~~~~~~~~~~~vS~RS~---~~~dv~~ia~---~~~-g--GGGH~~AAG~~i~~~~~e~~~  328 (343)
T 3dma_A          258 SEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSV---GKFPCNRLAA---EFF-N--GGGHLNASGGEFYGTMEEAVK  328 (343)
T ss_dssp             TTTGGGGGGGSTTCCEEEEEEECCCC--EEEEEEES---SSCCHHHHHH---HHT-S--CEECSSEEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEC---CCCCHHHHHH---HHC-C--CCCCHHHCEEEECCCHHHHHH
T ss_conf             799999874346837999999984898799998879---9888999999---875-9--956275510564799999999


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             889999999998619
Q gi|254780191|r  884 KADQAIAGVASFLKK  898 (898)
Q Consensus       884 ~l~eal~~vk~~Lke  898 (898)
                      .+.++++..++.|+|
T Consensus       329 ~~~~~i~~~~~~l~e  343 (343)
T 3dma_A          329 VFEQALEKYKPLLKE  343 (343)
T ss_dssp             HHHHHHHHSHHHHTC
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998449


No 36 
>1dpt_A D-dopachrome tautomerase; cytokine, growth factor; 1.54A {Homo sapiens} SCOP: d.80.1.3
Probab=74.97  E-value=2.8  Score=19.34  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             HHCCCC----HHHHHHHHHHHHHHHCCCCHHHEEEEECCC
Q ss_conf             314753----788999899861334189812379997188
Q gi|254780191|r   97 SFGGYF----KERAIQLAWDLLTKEFDLDQRRLYITVYDE  132 (898)
Q Consensus        97 SfgdYf----K~eai~~awe~lt~~~~l~~~~l~vtv~~~  132 (898)
                      |+|..-    .++...--.+||.+.||+|++|+|++++.-
T Consensus        63 sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~f~~~  102 (117)
T 1dpt_A           63 SIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPL  102 (117)
T ss_dssp             EESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf             9558686667799999999999987097967599999978


No 37 
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=74.22  E-value=3  Score=19.11  Aligned_cols=28  Identities=36%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHEEEEECCC
Q ss_conf             8999899861334189812379997188
Q gi|254780191|r  105 RAIQLAWDLLTKEFDLDQRRLYITVYDE  132 (898)
Q Consensus       105 eai~~awe~lt~~~~l~~~~l~vtv~~~  132 (898)
                      +...--.+||.+.||+|++|+|+++++-
T Consensus        75 ~~s~~i~~~l~~~LgI~~~Riyi~f~~~  102 (115)
T 1uiz_A           75 SYTKLLCDILTKQLNIPANRVYINYYDL  102 (115)
T ss_dssp             HHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf             9999999999997098936499999978


No 38 
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=72.55  E-value=3.4  Score=18.60  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHEEEEECCC
Q ss_conf             8999899861334189812379997188
Q gi|254780191|r  105 RAIQLAWDLLTKEFDLDQRRLYITVYDE  132 (898)
Q Consensus       105 eai~~awe~lt~~~~l~~~~l~vtv~~~  132 (898)
                      +...--.+||.+.||+|++|+|+.++.-
T Consensus        74 ~~s~~l~~~l~~~LgI~~~RiyI~f~d~  101 (113)
T 1hfo_A           74 DHSAKLFDHLNTKLGIPKNRMYIHFVNL  101 (113)
T ss_dssp             HHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             9999999999998497916499999978


No 39 
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* 3l5r_A* 3l5s_A* 3l5t_A* 3l5u_A* ...
Probab=72.12  E-value=3.4  Score=18.69  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHCCCCHHHEEEEECCC
Q ss_conf             999899861334189812379997188
Q gi|254780191|r  106 AIQLAWDLLTKEFDLDQRRLYITVYDE  132 (898)
Q Consensus       106 ai~~awe~lt~~~~l~~~~l~vtv~~~  132 (898)
                      ...--.+||.+.||+|++|+|++++.-
T Consensus        75 ~s~~i~~~l~~~LgI~~~RiyI~f~~~  101 (114)
T 3djh_A           75 YSKLLCGLLAERLRISPDRVYINYYDM  101 (114)
T ss_dssp             HHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             999999999998597957499999978


No 40 
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Probab=71.26  E-value=1.3  Score=21.85  Aligned_cols=17  Identities=29%  Similarity=0.321  Sum_probs=6.5

Q ss_pred             CCCHHHHHH-HHHHHHHH
Q ss_conf             899999999-99999898
Q gi|254780191|r  626 PITSAELKS-IEDNVNDI  642 (898)
Q Consensus       626 ~lt~eel~~-IE~~vN~~  642 (898)
                      .+|-..|.. ++..++.+
T Consensus       227 ~it~~~Lk~~l~~~~~~~  244 (350)
T 1b7y_A          227 GIAMAHLKGAIYELAQAL  244 (350)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             022798899999999974


No 41 
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=68.15  E-value=2.5  Score=19.72  Aligned_cols=45  Identities=36%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999988349999998101145899987889999999998619
Q gi|254780191|r  854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK  898 (898)
Q Consensus       854 ~lik~ia~~l~GGgGGGkpd~AQgGG~~~~~l~eal~~vk~~Lke  898 (898)
                      .+..+.++.+.||||||--.+..---....+.++.++.+.+-|++
T Consensus        17 klaeeaaklleggggggggelmklceeaakkaeelfklaeerlkk   61 (62)
T 2i7u_A           17 KLAEEAAKLLEGGGGGGGGELMKLCEEAAKKAEELFKLAEERLKK   61 (62)
T ss_dssp             HHHHHHHHHHHCSSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999987432229999999999998799999989998642


No 42 
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=68.12  E-value=1.4  Score=21.75  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             CCCCCCCCCEECCCCCCCHHH-----CCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEE
Q ss_conf             985111543224898786343-----464----88500178885422314753788999899861334189812379997
Q gi|254780191|r   59 QAVTTVQKCVRAGGKHNDLDN-----VGR----TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV  129 (898)
Q Consensus        59 ~r~~~~QkCiR~ggkhnDld~-----VG~----t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv  129 (898)
                      .|+..||+|.++|=|..+|++     +|.    .||=|+. =.+|+.+|-+             |-+..+    .+=+.+
T Consensus        35 ~p~~~s~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~-R~~Gk~~Fl~-------------LrD~~g----~iQ~v~   96 (548)
T 3i7f_A           35 MPMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAV-RGKGNMVFLF-------------LRKGIY----TCQALV   96 (548)
T ss_dssp             CCCCSSCGGGCCCCCBCCGGGCSGGGTTCEEEEEEEEEEE-EECSSEEEEE-------------EEETTE----EEEEEE
T ss_pred             CCCCCCCCCCCCCCEEEEHHHCCHHHCCCEEEEEEEEEEE-ECCCCEEEEE-------------EEECCC----CEEEEE
T ss_conf             7542365554578537684347755499989998998878-7589859999-------------971871----189999


Q ss_pred             CCCHHHHHHHHHHHCCCCHHHEEEC
Q ss_conf             1882899997566349998997535
Q gi|254780191|r  130 YDEDEEAFKLWKKISGLSADKIIRI  154 (898)
Q Consensus       130 ~~~D~e~~~iW~~~~gi~~~~i~~~  154 (898)
                      ..++....++|+..-.|+.+-++.+
T Consensus        97 ~~~~~~~~~~~~~~~~l~~esvv~V  121 (548)
T 3i7f_A           97 MKSETISKEFVQFCQKISAESICDI  121 (548)
T ss_dssp             ECSSSSCHHHHHHHHTCCTTEEEEE
T ss_pred             ECCCCCCHHHHHHHHCCCCCCEEEE
T ss_conf             7898875999999965998648999


No 43 
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=66.79  E-value=1.2  Score=22.31  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999898873
Q gi|254780191|r  631 ELKSIEDNVNDIIAQ  645 (898)
Q Consensus       631 el~~IE~~vN~~I~~  645 (898)
                      .+..+|+++..++.+
T Consensus       250 ~m~~~e~~i~~~~~~  264 (580)
T 1l0w_A          250 VLELNERLMAHVFRE  264 (580)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             887668999999999


No 44 
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=63.60  E-value=1.4  Score=21.72  Aligned_cols=10  Identities=10%  Similarity=0.228  Sum_probs=4.9

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999975212
Q gi|254780191|r  592 LLHHALSTIL  601 (898)
Q Consensus       592 lL~~alr~vL  601 (898)
                      -+-.++|+.|
T Consensus       188 ~i~~~iR~f~  197 (504)
T 1e1o_A          188 KILAAIRQFM  197 (504)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 45 
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.26  E-value=1.6  Score=21.25  Aligned_cols=10  Identities=20%  Similarity=0.232  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998988
Q gi|254780191|r  634 SIEDNVNDII  643 (898)
Q Consensus       634 ~IE~~vN~~I  643 (898)
                      -+|.++..++
T Consensus       247 ~~E~l~~~i~  256 (585)
T 1c0a_A          247 VMEALVRHLW  256 (585)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9989999999


No 46 
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=61.66  E-value=1.6  Score=21.11  Aligned_cols=10  Identities=30%  Similarity=0.547  Sum_probs=3.6

Q ss_pred             HEEECCCCCC
Q ss_conf             0230143475
Q gi|254780191|r   37 MFTNSGMVPF   46 (898)
Q Consensus        37 lft~Agm~~f   46 (898)
                      +.|.|++.+.
T Consensus         5 ~~~~~~~t~~   14 (456)
T 3m4p_A            5 MMTEATTTPV   14 (456)
T ss_dssp             ----------
T ss_pred             CCCCCCCCCC
T ss_conf             3111688875


No 47 
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=57.76  E-value=6.9  Score=16.26  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEEEEC
Q ss_conf             7889998998613341898123799971
Q gi|254780191|r  103 KERAIQLAWDLLTKEFDLDQRRLYITVY  130 (898)
Q Consensus       103 K~eai~~awe~lt~~~~l~~~~l~vtv~  130 (898)
                      |++-++--.+.|.+.+|+||+++||++.
T Consensus        75 K~~L~~~it~~l~~~lgi~~~~v~I~i~  102 (128)
T 1mww_A           75 KKRLIKMLFSELEYKLGIRAHDVEITIK  102 (128)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             9999999999999985949482999999


No 48 
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=56.57  E-value=7.3  Score=16.05  Aligned_cols=92  Identities=13%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHC-------CCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             9527999957999789999999999754-------997899999538981799998677897267989999999988349
Q gi|254780191|r  793 DVNFMSHIISEVDSKELKSVMDALQKKI-------QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG  865 (898)
Q Consensus       793 ~~~~i~~~~~~~d~~~Lr~l~d~l~~k~-------~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~G  865 (898)
                      +..+.+..++.++....+.++..+.++.       .+++++|++ ..+.++.+..+  ..+...+....+-..+...+. 
T Consensus        48 ~~~i~Vvtv~sl~g~~~~~~A~~l~~~w~iG~~~~~~GvLili~-~~dr~~~I~~g--~g~~~~l~d~~~~~ii~~~~~-  123 (157)
T 2kw7_A           48 AVEFAVVTLPSIGDAPLEDFTLKLARQWGVGNEKNNNGLLLVLV-LDQRRVRFETG--YGLEGYLPDGLLSRIIHDRMI-  123 (157)
T ss_dssp             CCEEEEEEESBCTTCCHHHHHHHHHHHHSTTTTSCTTEEEEEEE-TTTTEEEEEEC--STTTTTCCHHHHHHHHHHTHH-
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCEEEEEEC--CCHHHCCCHHHHHHHHHHHHH-
T ss_conf             97799997799999899999999999817876577787799997-47887999978--526631798999999999863-


Q ss_pred             CCCCCCCHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999981011458999878899999999986
Q gi|254780191|r  866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL  896 (898)
Q Consensus       866 GgGGGkpd~AQgGG~~~~~l~eal~~vk~~L  896 (898)
                            |.|.+|  .-...+..++..+...|
T Consensus       124 ------p~fk~g--~y~~gi~~~~~~i~~~l  146 (157)
T 2kw7_A          124 ------PHFRSG--NYAEGLSEGVLAVQQVL  146 (157)
T ss_dssp             ------HHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHCC--CHHHHHHHHHHHHHHHH
T ss_conf             ------988769--99999999999999996


No 49 
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=48.93  E-value=9.4  Score=15.18  Aligned_cols=29  Identities=3%  Similarity=0.117  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEEEECC
Q ss_conf             78899989986133418981237999718
Q gi|254780191|r  103 KERAIQLAWDLLTKEFDLDQRRLYITVYD  131 (898)
Q Consensus       103 K~eai~~awe~lt~~~~l~~~~l~vtv~~  131 (898)
                      |++-+.---+.+.+.+|.|++.+||++.+
T Consensus        17 K~~L~~~lt~~~~~~lg~p~e~v~V~i~E   45 (76)
T 3ej9_A           17 KRALSAGLLRVISEATGEPRENIFFVIRE   45 (76)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             99999999999999839292519999999


No 50 
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=48.32  E-value=9.6  Score=15.11  Aligned_cols=67  Identities=24%  Similarity=0.295  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             9789999999999754997899999538981799998677897-267989999999988349999998101
Q gi|254780191|r  805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM  874 (898)
Q Consensus       805 d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~-~~~~A~~lik~ia~~l~GGgGGGkpd~  874 (898)
                      .+..++..+|.++...+++-+++-.+..+..+.+.+-..+... ..+ +.++.+.+-+ + .|+.|++|..
T Consensus        39 ~p~~~q~~Idgi~~~~~~gr~lvRpSgTEp~iRi~vE~~~~~~~~~~-~~~i~~~v~~-~-~~~~g~~p~~  106 (112)
T 1wjw_A           39 TPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRL-AYEVSLLVFQ-L-AGGIGERPQP  106 (112)
T ss_dssp             SSTTHHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHH-HHHHHHHHHH-H-TCCCSSCCCC
T ss_pred             CCHHHHHHHHHHHEECCCEEEEEEECCCCCEEEEEEEECCHHHHHHH-HHHHHHHHHH-H-HCCCCCCCCC
T ss_conf             87989999998762468768999877998579999963999999999-9999999999-9-5787899989


No 51 
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=47.10  E-value=8.2  Score=15.65  Aligned_cols=33  Identities=33%  Similarity=0.360  Sum_probs=12.9

Q ss_pred             CCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             556733888421255677752013688999997521
Q gi|254780191|r  565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI  600 (898)
Q Consensus       565 l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~v  600 (898)
                      ++.|+.+-|+|.-  |..-|-+ --.+|++-+|-++
T Consensus        82 lRkg~piG~kvTL--Rg~~my~-FL~kli~i~lpri  114 (182)
T 1mji_A           82 LRKGMPIGLRVTL--RRDRMWI-FLEKLLNVALPRI  114 (182)
T ss_dssp             SSCCSEEEEEEEE--CHHHHHH-HHHHHHHTTTTTC
T ss_pred             CCCCCCEEEEEEC--CHHHHHH-HHHHHHHHHHHHC
T ss_conf             1379820699983--7889999-9999999772020


No 52 
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5}
Probab=43.79  E-value=11  Score=14.61  Aligned_cols=13  Identities=15%  Similarity=0.123  Sum_probs=9.5

Q ss_pred             CCCCCEEEEEECC
Q ss_conf             5556248998447
Q gi|254780191|r  671 KYNDRVRVVSVEY  683 (898)
Q Consensus       671 kygd~VRVV~I~~  683 (898)
                      +.||.|=++.+|.
T Consensus       286 ~~Gd~vll~~~G~  298 (309)
T 2ebd_A          286 KRGDLILMTAMGG  298 (309)
T ss_dssp             CTTCEEEEEEEET
T ss_pred             CCCCEEEEEEECH
T ss_conf             9989999999905


No 53 
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=40.93  E-value=12  Score=14.30  Aligned_cols=23  Identities=30%  Similarity=0.754  Sum_probs=11.2

Q ss_pred             HHHHHHHCCCCHHHEEECCCCCCCCCCC
Q ss_conf             9975663499989975357866654579
Q gi|254780191|r  137 FKLWKKISGLSADKIIRITTNDNFWSMA  164 (898)
Q Consensus       137 ~~iW~~~~gi~~~~i~~~~~~dNfW~~g  164 (898)
                      .+||.+..|++     .++..+||.++|
T Consensus        20 ~~i~~~vL~~~-----~i~~~~~Ff~lG   42 (91)
T 1dny_A           20 AEIWERVLGVS-----GIGILDNFFQIG   42 (91)
T ss_dssp             HHHHHHHHTCS-----SCCSSCCTTSSC
T ss_pred             HHHHHHHCCCC-----CCCCCCCHHHCC
T ss_conf             99999984999-----889998978828


No 54 
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis}
Probab=40.34  E-value=12  Score=14.23  Aligned_cols=24  Identities=13%  Similarity=0.602  Sum_probs=18.4

Q ss_pred             HHHHHHHHCCCCHHHEEECCCCCCCCCCC
Q ss_conf             99975663499989975357866654579
Q gi|254780191|r  136 AFKLWKKISGLSADKIIRITTNDNFWSMA  164 (898)
Q Consensus       136 ~~~iW~~~~gi~~~~i~~~~~~dNfW~~g  164 (898)
                      -.+||.++.|+|     .++..|||.+.|
T Consensus        15 l~~iw~~vL~~~-----~i~~~d~Ff~lG   38 (520)
T 2jgp_A           15 LAQVWEQVLNVP-----QVGALDDFFALG   38 (520)
T ss_dssp             HHHHHHHHHTCS-----CCCTTCBTTTTT
T ss_pred             HHHHHHHHCCCC-----CCCCCCCHHHHC
T ss_conf             999999983999-----979999967741


No 55 
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A*
Probab=40.31  E-value=7  Score=16.18  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             ECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0243000002476789999999999999898873
Q gi|254780191|r  612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ  645 (898)
Q Consensus       612 v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~  645 (898)
                      .+|+.+|-=|.-...+|+||..+|.+. |.|+.+
T Consensus       128 Kt~eeiR~~fgI~~D~T~ee~~~i~~e-~~W~fe  160 (160)
T 2p1m_A          128 KTPEEIRTTFNIKNDFTPEEEEEVRRE-NQWAFE  160 (160)
T ss_dssp             CCHHHHHHHTTCCCCCCHHHHHHHHHH-HHHHHC
T ss_pred             CCHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCCC
T ss_conf             999999999299988981045789883-175038


No 56 
>2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.46A {Aquifex aeolicus} SCOP: d.108.1.9
Probab=39.31  E-value=13  Score=14.12  Aligned_cols=19  Identities=11%  Similarity=0.109  Sum_probs=8.8

Q ss_pred             CCHHHHHHHHHHHHHHHCC
Q ss_conf             3005769999999997306
Q gi|254780191|r  243 NYDIDLFKHLIQASEQVTG  261 (898)
Q Consensus       243 ~ydtD~f~pii~~i~~~~g  261 (898)
                      .+++.++..|++.+....|
T Consensus        79 ~~~s~~e~~ly~lls~~~g   97 (203)
T 2arh_A           79 FFGSEAERKLYEFLSEHFG   97 (203)
T ss_dssp             HTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCHHHHHHHHHHHHHCC
T ss_conf             2377889999999875268


No 57 
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei TREU927} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=38.99  E-value=13  Score=14.17  Aligned_cols=49  Identities=24%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             CCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             65533899851046787556733888421255677752013688999997521254
Q gi|254780191|r  548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS  603 (898)
Q Consensus       548 k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~  603 (898)
                      |..+|+++| |.+....-..      .-||..|++..-.-|-.|.|..||-+-+|.
T Consensus       101 k~~~gy~l~-gqvhr~~sq~------~e~wsv~f~n~favtlehflesaltesfgf  149 (187)
T 2gia_B          101 KSAQGYHLH-GKVHRVASQR------MEDWSVKFDNHFAVTLEHFLESALDESFGF  149 (187)
T ss_dssp             ECSSEEEEE-EEECBTTCCC------CEEEEEEEETHHHHHHHHHHHHHHHHTTCH
T ss_pred             ECCCCEEEE-EEEEECHHHH------HHHHHEEECCCCCEEHHHHHHHHHHHHCCH
T ss_conf             268722886-3585155554------013403312320001999998776421025


No 58 
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=37.58  E-value=4.3  Score=17.88  Aligned_cols=51  Identities=12%  Similarity=0.207  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             899998748989999998999999998611546424574379985245888
Q gi|254780191|r  347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP  397 (898)
Q Consensus       347 I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP  397 (898)
                      |..+|..-+.+=...|..=...|+.+.+.+-.+++|+|++.-.|+..||.|
T Consensus       155 v~~lL~~a~~~A~~iL~~n~~~L~~la~~LLeketL~g~ei~~il~~~~~~  205 (238)
T 2di4_A          155 VKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIE  205 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             999999999999999999499999999999986737899999999548998


No 59 
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=37.43  E-value=12  Score=14.23  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=36.7

Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC---CCCHHHHHHHHHH
Q ss_conf             4642457437998524588889999876650774---4358889999999
Q gi|254780191|r  378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA---GIDIISFNQALEE  424 (898)
Q Consensus       378 ~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~---~vD~~~f~~~m~~  424 (898)
                      .++.|+++++..++-.-|+|.+..+.|-..-...   .+|.++|..+|.-
T Consensus        45 ~~G~Is~~el~~~l~ks~L~~~~L~~Iw~laD~d~dG~L~~~EF~~am~L   94 (121)
T 3fia_A           45 ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKL   94 (121)
T ss_dssp             BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             CCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             99878099999999992999999999999707899890979999999999


No 60 
>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=36.25  E-value=14  Score=13.77  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHH---CCC-CCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             1368899999752---125-444445530024300000247678999999999999
Q gi|254780191|r  587 HSATHLLHHALST---ILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN  638 (898)
Q Consensus       587 HTatHlL~~alr~---vLG-~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~  638 (898)
                      -++++|+.-|+++   +|| .|..-.+|++.|-+-   ++-.-.|+.+++..|+.+
T Consensus       361 ~~g~~L~~Va~HE~GH~LGL~HS~~~~alM~P~Y~---~~~~~~L~~DDi~gIQ~L  413 (421)
T 1eak_A          361 DQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYT---YTKNFRLSQDDIKGIQEL  413 (421)
T ss_dssp             CCCEEHHHHHHHHHHHHTTCCCCSCTTSTTCSBCC---CCSSCCCCHHHHHHHHHH
T ss_pred             CCCCCEEEEEHHHHCCCCCCCCCCCCCCEECCEEC---CCCCCCCCHHHHHHHHHH
T ss_conf             77744131103242220367667999860103131---577788887899999997


No 61 
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A
Probab=35.86  E-value=7.4  Score=15.98  Aligned_cols=82  Identities=9%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCH
Q ss_conf             999999999839998899999999999999999999999999876365--------355536952799995--7--9997
Q gi|254780191|r  739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDS  806 (898)
Q Consensus       739 ~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~  806 (898)
                      ..+...+++......+...+..+++.+++..+..+..+.........+        ...+--+.+.+....  .  ..++
T Consensus       130 ~~Ia~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~~~~~~~i~~H~af~Y~~~~~gl~~~~~~~~~~~~~ps~  209 (284)
T 2prs_A          130 VAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGA  209 (284)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEECCHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf             99999998759486766778999999999998999999834242577310160567689976984754313587667898


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             89999999999754
Q gi|254780191|r  807 KELKSVMDALQKKI  820 (898)
Q Consensus       807 ~~Lr~l~d~l~~k~  820 (898)
                      +.|+.+.+.++++.
T Consensus       210 ~~l~~~~~~ik~~~  223 (284)
T 2prs_A          210 QRLHEIRTQLVEQK  223 (284)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999875159


No 62 
>3e1y_E Eukaryotic peptide chain release factor GTP- binding subunit ERF3A; translation termination, peptide release, PTC, acetylation, cytoplasm; HET: ATP; 3.80A {Homo sapiens}
Probab=33.62  E-value=16  Score=13.47  Aligned_cols=32  Identities=13%  Similarity=0.222  Sum_probs=27.6

Q ss_pred             CCCCCEEEEEEEECCCEEEECCCCCEEEEEEC
Q ss_conf             56553489999747813200047976999973
Q gi|254780191|r  485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD  516 (898)
Q Consensus       485 ~~~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd  516 (898)
                      .....++|..|...++.++++.+|+.+.+.|.
T Consensus        41 Ps~~~~~VksI~~~~~~~~~a~aG~~v~l~L~   72 (204)
T 3e1y_E           41 PNKHNVEVLGILSDDVETDTVAPGENLKIRLK   72 (204)
T ss_dssp             TTTEEEEEEEECSSSSCBSEECTTSEEEEEEE
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             89967999999984850020168866778863


No 63 
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small chain); lyase (carbon-carbon); 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=33.28  E-value=16  Score=13.43  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHH----------------CCCCCEEEEE
Q ss_conf             247678999999999999989887304530466123222100----03554431----------------5556248998
Q gi|254780191|r  621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGT----------------KYNDRVRVVS  680 (898)
Q Consensus       621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~----ga~alfge----------------kygd~VRVV~  680 (898)
                      ||+--+||++||.   +.+..+|.++..+.+++.+....+..    +...+||.                -.++-||+|-
T Consensus         8 fSyLP~Ltd~qI~---~QI~yll~qGw~i~~E~ad~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~~~~p~~YVRliG   84 (139)
T 1bxn_I            8 FSFLPELTDEQIT---KQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTA   84 (139)
T ss_dssp             TTTSSCCCHHHHH---HHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             ECCCCCCCHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             0458999999999---9999999789973489816887777610053566557999999999999999989987699999


Q ss_pred             ECCCCCCCCCEECCC--CCCCCCHHHHHHHHEECCCCCCCCC
Q ss_conf             447677855310156--2225886460110011012126882
Q gi|254780191|r  681 VEYEDGGVHSSALCG--GTHVSSTGEIMLLYIVSESSIRAGI  720 (898)
Q Consensus       681 I~~~d~~~~S~ElCG--GTHV~nTgeIG~fkIise~si~sGv  720 (898)
                      |+..-.    ++ |.  ..=|.+-++=..|.+.+.++.+.-+
T Consensus        85 fD~~rq----~Q-~~~~sfIV~RP~~~pgf~l~r~~~~gR~~  121 (139)
T 1bxn_I           85 FDSTHT----VE-SVVMSFIVNRPADEPGFRLVRQEEPGRTL  121 (139)
T ss_dssp             ECTTTC----CE-EEEEECCCCGGGSCSSCEEEEEECSTTCE
T ss_pred             EECCCC----EE-EEEEEEEEECCCCCCCCEEEECCCCCCEE
T ss_conf             968865----58-72699999889999984555102699504


No 64 
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=32.34  E-value=16  Score=13.32  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEEEEC
Q ss_conf             7889998998613341898123799971
Q gi|254780191|r  103 KERAIQLAWDLLTKEFDLDQRRLYITVY  130 (898)
Q Consensus       103 K~eai~~awe~lt~~~~l~~~~l~vtv~  130 (898)
                      |++-+.=--+.+.+.+|.||+..||++.
T Consensus        19 K~~l~~~iT~~~~~~lg~~~e~v~V~i~   46 (67)
T 3m21_A           19 KQQLIEGVSDLMVKVLNKNKASIVVIID   46 (67)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             9999999999999995959243999999


No 65 
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=30.84  E-value=7  Score=16.18  Aligned_cols=18  Identities=44%  Similarity=0.763  Sum_probs=12.6

Q ss_pred             CCCCCHHHCCCCCCCHHH
Q ss_conf             987863434648850017
Q gi|254780191|r   72 GKHNDLDNVGRTNRHHTF   89 (898)
Q Consensus        72 gkhnDld~VG~t~rH~Tf   89 (898)
                      +|||||--||+++|--+|
T Consensus        84 A~FnDLRFvGRSGRGKsF  101 (140)
T 1eaq_A           84 ARFNDLRFVGRSGRGKSF  101 (140)
T ss_dssp             EECSSCEECSCCCTTCCB
T ss_pred             CCCCCEEEECCCCCCCEE
T ss_conf             321560671467887348


No 66 
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=30.58  E-value=12  Score=14.40  Aligned_cols=200  Identities=9%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             36889999975212544444553002430000024767899999999999998988730453046612322210003554
Q gi|254780191|r  588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL  667 (898)
Q Consensus       588 TatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~al  667 (898)
                      |.+..|....+++-|+.+.-  +++.+.   -| .|.-.+++.+++++.+ ++-+|+.+...+.......++.       
T Consensus        15 ts~~pl~~lv~~I~gd~v~V--~li~~g---~d-pH~ye~~p~d~~~l~~-ADliv~~G~~lE~~~~~~~~~~-------   80 (284)
T 3cx3_A           15 TSFYPIYAMVKEVSGDLNDV--RMIQSS---SG-IHSFEPSANDIAAIYD-ADVFVYHSHTLESWAGSLDPNL-------   80 (284)
T ss_dssp             ESSHHHHHHHHHHHTTSSEE--EECCCC---SC-TTTCCCCHHHHHHHHH-SSEEEESCTTTSCTTTTCCTTT-------
T ss_pred             EECHHHHHHHHHHCCCCCEE--EECCCC---CC-CCCCCCCHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHH-------
T ss_conf             98789999999974996159--971899---89-8735589999999964-9999991885077899999986-------


Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf             43155562489984476778553101562225886460110011012126882899997168999999999999999999
Q gi|254780191|r  668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS  747 (898)
Q Consensus       668 fgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~~A~~~~~~~~~~l~~la~  747 (898)
                          -...+.++.....   .-..+.....|... ++-.     .+    .|-.-=..=  ..-.....-...+...+++
T Consensus        81 ----~~~~~~v~~~~~~---~~~~~~~~~~~~~~-~~~~-----~~----~~~~dPH~W--ldp~~~~~~a~~I~~~L~~  141 (284)
T 3cx3_A           81 ----KKSKVKVLEASEG---MTLERVPGLEDVEA-GDGV-----DE----KTLYDPHTW--LDPEKAGEEAQIIADKLSE  141 (284)
T ss_dssp             ----TTCCCEEEETTTT---CCCCBCCC-----------------------CCBCCCGG--GSHHHHHHHHHHHHHHHHH
T ss_pred             ----HCCCCEEEECCCC---CCCCCCCCCCCCCC-CCCC-----CC----CCCCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_conf             ----4157513211236---54000134211004-5554-----54----568888665--7836789999999999998


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCHHHHHHHHHH
Q ss_conf             839998899999999999999999999999999876365--------355536952799995--7--9997899999999
Q gi|254780191|r  748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDSKELKSVMDA  815 (898)
Q Consensus       748 ~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~~~Lr~l~d~  815 (898)
                      +.....+...+..+++.+++.++..+.............        ...+--+.+.+....  .  ..+++.|..+.+.
T Consensus       142 ~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~~~~~~~v~~h~a~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~  221 (284)
T 3cx3_A          142 VDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEF  221 (284)
T ss_dssp             HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             68310678899999998778998899999875314564588661279999987994444111256554228899999999


Q ss_pred             HHHHC
Q ss_conf             99754
Q gi|254780191|r  816 LQKKI  820 (898)
Q Consensus       816 l~~k~  820 (898)
                      +++..
T Consensus       222 ik~~~  226 (284)
T 3cx3_A          222 VKTYK  226 (284)
T ss_dssp             HHHTT
T ss_pred             HHHCC
T ss_conf             98559


No 67 
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp}
Probab=30.06  E-value=18  Score=13.05  Aligned_cols=28  Identities=18%  Similarity=0.258  Sum_probs=13.9

Q ss_pred             CCCCCCHHHHHHHHEECCCCCCCCCEEEEE
Q ss_conf             222588646011001101212688289999
Q gi|254780191|r  696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEA  725 (898)
Q Consensus       696 GTHV~nTgeIG~fkIise~si~sGvRRIea  725 (898)
                      |-|..|+--.+.  -.+...+.+|++.|..
T Consensus       205 ~~H~Hn~~Gla~--an~laAi~aG~~~id~  232 (307)
T 1ydo_A          205 ALHFHDTRGTAL--ANMVTALQMGITVFDG  232 (307)
T ss_dssp             EEECBGGGSCHH--HHHHHHHHHTCCEEEE
T ss_pred             CEEECCCCCHHH--HHHHHHHHHCCCEEEE
T ss_conf             055458835699--9999999919999996


No 68 
>2flt_A CIS-3-chloroacrylic acid dehalogenase; 4OT family, hydratase, covalent inhibitor, 4-oxalocrotonate tautomerase, hydrolase; 2.10A {Coryneform bacterium} PDB: 2flz_A
Probab=29.52  E-value=18  Score=12.98  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEEEE
Q ss_conf             788999899861334189812379997
Q gi|254780191|r  103 KERAIQLAWDLLTKEFDLDQRRLYITV  129 (898)
Q Consensus       103 K~eai~~awe~lt~~~~l~~~~l~vtv  129 (898)
                      |+.-+..-.+.|.+.+|++++.+||.+
T Consensus        78 K~~L~~~l~~~L~~~~gi~~~~vwv~~  104 (149)
T 2flt_A           78 KGQLAQRIVDDVSVAAEIDRKHIWVYF  104 (149)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             999999999999998598945489999


No 69 
>2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase, peptidyl carrier protein, thiolation domain, non-ribosomal peptide synthetase; NMR {Escherichia coli}
Probab=29.34  E-value=16  Score=13.38  Aligned_cols=25  Identities=8%  Similarity=0.248  Sum_probs=14.1

Q ss_pred             HHHHHHHHHCCCCHHHEEECCCCCCCCCCC
Q ss_conf             999975663499989975357866654579
Q gi|254780191|r  135 EAFKLWKKISGLSADKIIRITTNDNFWSMA  164 (898)
Q Consensus       135 e~~~iW~~~~gi~~~~i~~~~~~dNfW~~g  164 (898)
                      .-.+||.++.|++     .+|..|||.+.|
T Consensus        21 ~l~~iw~~vLg~~-----~ig~~d~Ff~lG   45 (343)
T 2roq_A           21 IIAAAFSSLLGCD-----VQDADADFFALG   45 (343)
T ss_dssp             HHHHHHHHHTTSS-----CCCSSCCHHHHT
T ss_pred             HHHHHHHHHHCCC-----CCCCCCCHHHCC
T ss_conf             9999999983889-----779999936668


No 70 
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ...
Probab=28.96  E-value=7.8  Score=15.83  Aligned_cols=24  Identities=13%  Similarity=0.385  Sum_probs=15.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             678999999999999989887304
Q gi|254780191|r  624 SKPITSAELKSIEDNVNDIIAQNL  647 (898)
Q Consensus       624 ~~~lt~eel~~IE~~vN~~I~~n~  647 (898)
                      -..||++|+..+=+.+-.++.+.+
T Consensus       191 ~~~Ls~~~~~~L~~~~~~vl~~ai  214 (256)
T 3gpu_A          191 AASLSSKEIERLHEEMVATIGEAV  214 (256)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             133899999999999999999999


No 71 
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=28.46  E-value=19  Score=12.85  Aligned_cols=18  Identities=11%  Similarity=-0.125  Sum_probs=9.9

Q ss_pred             HCCCCCCCHHHHHHHHHH
Q ss_conf             114589998788999999
Q gi|254780191|r  874 MAQSGGPNGNKADQAIAG  891 (898)
Q Consensus       874 ~AQgGG~~~~~l~eal~~  891 (898)
                      -|-|-+-+.+.|-++|+.
T Consensus       319 pAvGfai~ld~l~~~l~~  336 (344)
T 1z7m_A          319 FAIGFCCHMDTILKALER  336 (344)
T ss_dssp             CCEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHH
T ss_conf             779999679999999986


No 72 
>3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=27.77  E-value=19  Score=12.77  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHH-HHCCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             88999999999-848743-31045689999986455555
Q gi|254780191|r  303 RIMRRAMCYAR-LLGYTE-PLMMHLLPALCTEMGSAYPE  339 (898)
Q Consensus       303 rilRRa~r~~~-~lg~~~-~fl~~lv~~v~~~m~~~ype  339 (898)
                      ..|++++.|+. .+|++. .|++++++.++   ++.||.
T Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~---g~~YP~  135 (533)
T 3f6t_A          100 KFLIDAVNYCHTELGLNRDKVVAEWVNGAV---ANNYPV  135 (533)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---TCSCCS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCC
T ss_conf             899999999998868997899999987420---688989


No 73 
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.47  E-value=17  Score=13.24  Aligned_cols=12  Identities=33%  Similarity=0.794  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             017888542231
Q gi|254780191|r   87 HTFFEMLGNFSF   98 (898)
Q Consensus        87 ~TfFEMlGn~Sf   98 (898)
                      ..+|-|.|||.-
T Consensus        10 ~ay~smvgnwak   21 (26)
T 1emz_A           10 IAYFSMVGNWAK   21 (26)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999603865


No 74 
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.15  E-value=20  Score=12.69  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8899999999999999999999
Q gi|254780191|r  753 QGNVVGRVEEIWEEYRKLQLIH  774 (898)
Q Consensus       753 ~~~i~~ki~~L~~e~K~l~k~~  774 (898)
                      ..++..|++.|.+|+++|+.++
T Consensus        28 ~~eLkqK~e~L~eEN~eLK~kL   49 (53)
T 2yy0_A           28 LAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999998


No 75 
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=27.12  E-value=20  Score=12.68  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf             899999999999789889116675
Q gi|254780191|r    5 SSIRTTFLEFFQKNGHELLPSSSL   28 (898)
Q Consensus         5 ~eiR~~fl~fF~~~~H~~~~s~sl   28 (898)
                      ..|++.+.+.|+++|...|....+
T Consensus        28 ~~i~~~l~~~~~~~Gy~~I~tP~~   51 (400)
T 3od1_A           28 KNICDQMTEEINLWGYDMIETPTL   51 (400)
T ss_dssp             HHHHHHHHHHHHHTTCEECBCCSE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCE
T ss_conf             999999999999869957676856


No 76 
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10
Probab=25.24  E-value=4.8  Score=17.49  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             248999998989999874033334446412---577889999999998487433104568999998645555
Q gi|254780191|r  270 VNHRVIVDHLRSSSFLIADGILPANEGRGY---VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP  338 (898)
Q Consensus       270 ~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGY---vlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~yp  338 (898)
                      +.|-+..|-+|-..-.- .+--=+-.|||-   ...++.||++|.+.++.  ...|.+.+..+.+...+.|+
T Consensus       117 ~P~H~~lD~~~E~~r~~-g~~~iGTTgrGIGPaY~DK~~R~gir~~Dl~d--~~~l~~kl~~l~~~~~~~~~  185 (442)
T 1p9b_A          117 FDIHQIIDSIQETKKLK-EGKQIGTTKRGIGPCYSTKASRIGIRLGTLKN--FENFKNMYSKLIDHLMDLYN  185 (442)
T ss_dssp             CHHHHHHHHHHHHHHHH-TTCCCCCCSSSHHHHHHHHHTTCCCBGGGGGS--HHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHCC
T ss_conf             85788766777654114-77655668887869889765401441221158--67899999999987755312


No 77 
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.40  E-value=10  Score=14.91  Aligned_cols=195  Identities=11%  Similarity=0.016  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             36889999975212544444553002430000024767899999999999998988730453046612322210003554
Q gi|254780191|r  588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL  667 (898)
Q Consensus       588 TatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~al  667 (898)
                      |.+.-|....+++-|+.+.-  +++.+.   .| .|.-.+++.++.++.+ +.-+|......+. |++.  ...      
T Consensus        17 ~s~~pl~~iv~~I~Gd~~~V--~li~~g---~d-PH~ye~~p~d~~~l~~-Adliv~~G~~lE~-~l~~--~~~------   80 (286)
T 3gi1_A           17 TSFYPMYAMTKEVSGDLNDV--RMIQSG---AG-IHSFEPSVNDVAAIYD-ADLFVYHSHTLEA-WARD--LDP------   80 (286)
T ss_dssp             ESSHHHHHHHHHHHTTSSEE--EEC---------CCSCCCCHHHHHHHHT-SSEEEESCTTTSG-GGTT--CCT------
T ss_pred             EECHHHHHHHHHHCCCCCEE--EECCCC---CC-CCCCCCCHHHHHHHHC-CCEEEEECCCCHH-HHHH--HHH------
T ss_conf             98789999999983897159--975899---89-7644589999999966-9999992885157-8999--998------


Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEECH----HHHHHHHHHHHHHH
Q ss_conf             43155562489984476778553101562225886460110011012126882899997168----99999999999999
Q gi|254780191|r  668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ----RARSHLMGQDEKLK  743 (898)
Q Consensus       668 fgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeavtG~----~A~~~~~~~~~~l~  743 (898)
                        .--...+.++......   ...+..+.-|........         . .|      .--+    .-.....-...+-+
T Consensus        81 --~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~---------~-~~------~~dPH~Wldp~~~~~~a~~I~~  139 (286)
T 3gi1_A           81 --NLKKSKVDVFEASKPL---TLDRVKGLEDMEVTQGID---------P-AT------LYDPHTWTDPVLAGEEAVNIAK  139 (286)
T ss_dssp             --TTTTCCCEEEETTTTS---CCCBCC-------------------------------CBCCCGGGSHHHHHHHHHHHHH
T ss_pred             --HCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCC---------C-CC------CCCCCEECCHHHHHHHHHHHHH
T ss_conf             --6445676424225651---221026765222346777---------7-78------9998741789999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCEEEEEE--C--CCCHHHHHH
Q ss_conf             9999839998899999999999999999999999999876365--------355536952799995--7--999789999
Q gi|254780191|r  744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--------SCHKIADVNFMSHII--S--EVDSKELKS  811 (898)
Q Consensus       744 ~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~--------~~~~i~~~~~i~~~~--~--~~d~~~Lr~  811 (898)
                      .++++.....+...+..+++.+++..+..+..+.........+        ...+--+++.+...-  .  ..+++.|.+
T Consensus       140 ~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~H~a~~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~  219 (286)
T 3gi1_A          140 ELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKE  219 (286)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             99876968789999999999999999999999975431335258867646899998398514421246777898778999


Q ss_pred             HHHHHHHH
Q ss_conf             99999975
Q gi|254780191|r  812 VMDALQKK  819 (898)
Q Consensus       812 l~d~l~~k  819 (898)
                      +.+.+++.
T Consensus       220 l~~~ik~~  227 (286)
T 3gi1_A          220 IQDFVKEY  227 (286)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
T ss_conf             99999975


No 78 
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=24.37  E-value=18  Score=13.02  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=8.8

Q ss_pred             CCCCCCEECCCCCCCH
Q ss_conf             1115432248987863
Q gi|254780191|r   62 TTVQKCVRAGGKHNDL   77 (898)
Q Consensus        62 ~~~QkCiR~ggkhnDl   77 (898)
                      -+.||||-+   |.|+
T Consensus        22 gnpqkciga---hedv   34 (34)
T 1ag7_A           22 GNPQKCIGA---HEDV   34 (34)
T ss_dssp             SSSCEEEET---TCCC
T ss_pred             CCCHHCCCC---CCCC
T ss_conf             981221354---4669


No 79 
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=23.81  E-value=22  Score=12.24  Aligned_cols=13  Identities=23%  Similarity=0.235  Sum_probs=8.9

Q ss_pred             CCCCCEEEEEECC
Q ss_conf             5556248998447
Q gi|254780191|r  671 KYNDRVRVVSVEY  683 (898)
Q Consensus       671 kygd~VRVV~I~~  683 (898)
                      +.||.|=++.+|.
T Consensus       288 ~~Gd~vll~~~G~  300 (313)
T 1zow_A          288 KDDDTIVLVGFGG  300 (313)
T ss_dssp             CTTCEEEEEEEET
T ss_pred             CCCCEEEEEEECH
T ss_conf             9959999999965


No 80 
>2rh3_A Protein VIRC2; ribbon-helix-helix, crown GALL tumor, plasmid, DNA binding protein; 1.70A {Agrobacterium tumefaciens} SCOP: a.43.1.10
Probab=23.56  E-value=23  Score=12.21  Aligned_cols=35  Identities=11%  Similarity=0.184  Sum_probs=20.3

Q ss_pred             EECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             8524588889999876650774435888999999999764
Q gi|254780191|r  390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA  429 (898)
Q Consensus       390 LyDTyGfP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~s  429 (898)
                      .-.+.=||.++.+ +|+.+    +|.-|++....=-+..+
T Consensus        71 V~TsRmfp~~l~e-~Ar~h----FDplglesarafg~klA  105 (121)
T 2rh3_A           71 VQTSRMFPVSLIE-AARNH----FDPLGLETARAFGHKLA  105 (121)
T ss_dssp             EEEEEECCHHHHH-HHHHH----HSTTSCSCHHHHHHHHH
T ss_pred             EEECCCCCHHHHH-HHHHH----CCCHHHHHHHHHHHHHH
T ss_conf             8752437588999-99983----68143688999999999


No 81 
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=23.23  E-value=23  Score=12.16  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=18.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99988999999999999999999999
Q gi|254780191|r  750 KVSQGNVVGRVEEIWEEYRKLQLIHA  775 (898)
Q Consensus       750 ~~~~~~i~~ki~~L~~e~K~l~k~~~  775 (898)
                      ....+++..++.+|+-|+|.|++++.
T Consensus         7 ~~tvEeLaaeL~kL~mENK~LKkkl~   32 (110)
T 2oa5_A            7 DKTYEEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999987899999986


No 82 
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1
Probab=23.18  E-value=18  Score=12.95  Aligned_cols=15  Identities=20%  Similarity=0.465  Sum_probs=5.9

Q ss_pred             EEECCCCCCCEEEEE
Q ss_conf             852245655338998
Q gi|254780191|r  542 QITDVQKKAEGIFVH  556 (898)
Q Consensus       542 ~V~dv~k~~~g~i~H  556 (898)
                      .|..+...++-.++|
T Consensus        81 kiYRifp~Ge~~~lh   95 (138)
T 1jb0_D           81 KIYRIFPDGETVLIH   95 (138)
T ss_dssp             EEEEECTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEC
T ss_conf             489963899557863


No 83 
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii OT3}
Probab=23.09  E-value=11  Score=14.64  Aligned_cols=137  Identities=20%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHCCC---CCCCC----CCHHHHHHHHHHHHHHH--------
Q ss_conf             53101757999999988798530--057699999999973067---85433----50248999998989999--------
Q gi|254780191|r  222 MSIDTGMGLERMATVLQEKTNNY--DIDLFKHLIQASEQVTGM---KYEGN----NIVNHRVIVDHLRSSSF--------  284 (898)
Q Consensus       222 ~~IDTGmGLERl~~vlqg~~s~y--dtD~f~pii~~i~~~~g~---~y~~~----~~~~~rvIaDH~Ra~~f--------  284 (898)
                      ..||+-+-|||+.|+-.+.+.-.  +.|-++.++..-+-+-..   +|+-+    .+..+++-...+|..--        
T Consensus        31 ~~vdve~~leRv~w~k~~~~pe~il~~~d~kDL~~FYALLGALa~SPYGlEmELVk~aNl~iY~eRirr~~~i~~~~i~v  110 (222)
T 2dla_A           31 KIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISI  110 (222)
T ss_dssp             GTCCHHHHHHHHGGGTCGGGSHHHHSCCHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHHHHHTTCSSCCTTTSSS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             01459999989887642798578747588999999999986461597540034676522699999998743577430123


Q ss_pred             -HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf             -87403333444641257788999999999848-7433104568999-99864555-----5557646788999987489
Q gi|254780191|r  285 -LIADGILPANEGRGYVLRRIMRRAMCYARLLG-YTEPLMMHLLPAL-CTEMGSAY-----PELIQAKLLIEETLRSEDE  356 (898)
Q Consensus       285 -~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg-~~~~fl~~lv~~v-~~~m~~~y-----peL~~~~~~I~~ii~~EE~  356 (898)
                       ..+++-+|-|.      |++|-|  +|+. |. -+.+ |.+..+.+ -+.++++|     -.|..     .+.|+.=++
T Consensus       111 ~~v~~~E~P~~D------~~ilEr--~~~~-lPeYk~~-lkdFL~L~~~~sLk~~YIr~G~~YLr~-----e~liklW~K  175 (222)
T 2dla_A          111 DVSTAIEFPTED------VRKIER--VYGK-IPEYTMK-ISDFLDLVPDEKLANYYIYEGRVYLKR-----EDLIRIWSK  175 (222)
T ss_dssp             SEEECCCCCGGG------HHHHHH--HHSS-CCCEEEE-HHHHHHHCTTSCGGGSEEETTEEEECH-----HHHHHHHHH
T ss_pred             EECCCCCCCCHH------HHHHHH--HHCC-CCHHHHH-HHHHHHHCCCCCCCEEEEECCEEEECH-----HHHHHHHHH
T ss_conf             562556588038------999999--9642-8513632-999985447875022788857467629-----889999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             89999998999999998
Q gi|254780191|r  357 RFGKTLDRGLVLLDGVL  373 (898)
Q Consensus       357 ~F~~TL~~G~~~l~~~i  373 (898)
                      .|.+.++++..++-.+-
T Consensus       176 aFEkN~EraVNiLYEiR  192 (222)
T 2dla_A          176 AFERNVERGVNMLYEIR  192 (222)
T ss_dssp             HHHHHHHHHHHHTSSST
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99998999999999999


No 84 
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco/reaction intermediate); HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=22.79  E-value=23  Score=12.10  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CHHHHHHH----------------HCCCCCEEEEE
Q ss_conf             24767899999999999998988730453046612322210----00355443----------------15556248998
Q gi|254780191|r  621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLG----------------TKYNDRVRVVS  680 (898)
Q Consensus       621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~----~ga~alfg----------------ekygd~VRVV~  680 (898)
                      ||+--+||+++|.   +.|..+|.++..+.+++.+....+.    .+...+||                +-.++-||+|-
T Consensus         8 fSyLP~LtdeqI~---~QV~yll~qGw~i~iE~~d~~~~r~~yW~mw~lPmf~~~d~~~Vl~Ele~C~~~~p~~YVRlig   84 (138)
T 1bwv_S            8 FSFLPDLTDEQIK---KQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVG   84 (138)
T ss_dssp             TTTSCCCCHHHHH---HHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             ECCCCCCCHHHHH---HHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             0458999999999---9999997089876467636775566400032576457999999999999999989977499999


Q ss_pred             ECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCC
Q ss_conf             4476778553101562225886460110011012126882
Q gi|254780191|r  681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI  720 (898)
Q Consensus       681 I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGv  720 (898)
                      |+..-. .  .--|-+.=|.+-+.=-.|.+.+.++-+.-+
T Consensus        85 fD~~rq-~--qs~~~sfIV~RP~~~pgf~l~r~e~~gR~~  121 (138)
T 1bwv_S           85 FSSVRG-I--ESTIISFIVNRPKHEPGFNLMRQEDKSRSI  121 (138)
T ss_dssp             EECCTT-T--CEEEEEEEEECCSCCCCEEEEEEECSTTCE
T ss_pred             EECCCC-E--EEEEEEEEECCCCCCCCCEEEEECCCCCCE
T ss_conf             978744-5--786899885079999982466423799532


No 85 
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=21.91  E-value=24  Score=11.98  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=35.7

Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---CCCCHHHHHHHHHH
Q ss_conf             5464245743799852458888999987665077---44358889999999
Q gi|254780191|r  377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL---AGIDIISFNQALEE  424 (898)
Q Consensus       377 ~~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi---~~vD~~~f~~~m~~  424 (898)
                      .+++.|+++++-.++-..|+|.+..+.|-..-..   ..+|.++|..+|.-
T Consensus        26 d~~G~i~~~e~~~~l~~s~L~~~~L~~Iw~l~D~d~dG~L~~~EF~~am~L   76 (111)
T 2kgr_A           26 TMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHL   76 (111)
T ss_dssp             SSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHH
T ss_pred             CCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHH
T ss_conf             999857078898889872889999999999766799980879999999999


No 86 
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=21.78  E-value=24  Score=11.96  Aligned_cols=44  Identities=14%  Similarity=0.284  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHH-H----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5778899999999-9----848743310456899999864555555764
Q gi|254780191|r  300 VLRRIMRRAMCYA-R----LLGYTEPLMMHLLPALCTEMGSAYPELIQA  343 (898)
Q Consensus       300 vlRrilRRa~r~~-~----~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~  343 (898)
                      .+|..||+++..- .    ..++..+.+.++.......+...||++.+.
T Consensus        20 ~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~eE   68 (357)
T 2x1d_A           20 AAKAVIARSIDFAVDLIRGKTKKTDEELKQVLSQLGRVIEERWPKYYEE   68 (357)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             9999999999999999975258987999999999999998879188999


No 87 
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.37  E-value=25  Score=11.90  Aligned_cols=20  Identities=10%  Similarity=-0.076  Sum_probs=9.1

Q ss_pred             HCCCCCCHHHHHHHHHHHHH
Q ss_conf             48743310456899999864
Q gi|254780191|r  315 LGYTEPLMMHLLPALCTEMG  334 (898)
Q Consensus       315 lg~~~~fl~~lv~~v~~~m~  334 (898)
                      +|.--|....|.+.+.....
T Consensus        15 ~g~lCpt~c~l~d~L~kqe~   34 (409)
T 1m1j_C           15 FGSYCPTTCGIADFFNKYRL   34 (409)
T ss_dssp             GCCEEECTTHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHH
T ss_conf             48858884157799999998


No 88 
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=20.86  E-value=25  Score=11.82  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=9.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             789999999999999898873
Q gi|254780191|r  625 KPITSAELKSIEDNVNDIIAQ  645 (898)
Q Consensus       625 ~~lt~eel~~IE~~vN~~I~~  645 (898)
                      +..|+|++++|=+.+-+...+
T Consensus        10 ~g~s~e~~~~i~~~vh~alve   30 (131)
T 2aal_A           10 YGRTDAQIKSLLDAAHGAMVD   30 (131)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999999999


No 89 
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=20.74  E-value=25  Score=11.80  Aligned_cols=59  Identities=12%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CHHHHHHHHC----------------CCCCEEEEE
Q ss_conf             24767899999999999998988730453046612322210----0035544315----------------556248998
Q gi|254780191|r  621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTK----------------YNDRVRVVS  680 (898)
Q Consensus       621 fsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~----~ga~alfgek----------------ygd~VRVV~  680 (898)
                      ||+--+||++||.   +.|+.+|..+..+-+++.+....+.    .+...+||+.                .++-||+|-
T Consensus        16 fSylP~lt~~~I~---~QV~yll~qG~~i~iE~ad~~~~~~~yW~mw~lPmf~~~d~~~Vl~ele~c~~~~p~~YVRlig   92 (110)
T 1svd_M           16 FSYLPPMNAERIR---AQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVA   92 (110)
T ss_dssp             TTTSCCCCHHHHH---HHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred             CCCCCCCCHHHHH---HHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             0258999999999---9999999789985688612677777763114788757889999999999999989987799999


Q ss_pred             EC
Q ss_conf             44
Q gi|254780191|r  681 VE  682 (898)
Q Consensus       681 I~  682 (898)
                      |+
T Consensus        93 ~D   94 (110)
T 1svd_M           93 YD   94 (110)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             80


No 90 
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} SCOP: e.28.1.1
Probab=20.66  E-value=26  Score=11.79  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCC-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCCCCC
Q ss_conf             76653101757-----9999999887985300576999999999730---678543
Q gi|254780191|r  219 LPKMSIDTGMG-----LERMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEG  266 (898)
Q Consensus       219 Lp~~~IDTGmG-----LERl~~vlqg~~s~ydtD~f~pii~~i~~~~---g~~y~~  266 (898)
                      -....+|+=+|     .=|+-..|||---+=..+.|+.-+..++.+.   ++.|..
T Consensus       197 ~~~~~vDv~~~A~~D~vYrVH~~L~~yIe~~Q~~~~R~s~~WL~~lg~~Kri~~~~  252 (901)
T 2btv_A          197 VATRDVDVFIGACSEPIYRIYNRLQGYIEAVQLQELRNSIGWLERLGQRKRITYSQ  252 (901)
T ss_dssp             SSSSCEEEEECCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             56661023303577079999999999997513899999999999976522654577


No 91 
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=20.40  E-value=16  Score=13.28  Aligned_cols=14  Identities=21%  Similarity=0.468  Sum_probs=4.9

Q ss_pred             EEEECCCCEEECCC
Q ss_conf             99973752000368
Q gi|254780191|r  512 EVVFDQTPFYAEAG  525 (898)
Q Consensus       512 ~ivLd~T~FY~E~G  525 (898)
                      -.||+-+.=.-.+.
T Consensus        89 Tyvl~G~l~H~DS~  102 (256)
T 2vec_A           89 NVILDGEAEYRDSE  102 (256)
T ss_dssp             EEEEESEEEEEETT
T ss_pred             EEEEEEEEEEECCC
T ss_conf             99977799981289


No 92 
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.37  E-value=26  Score=11.75  Aligned_cols=31  Identities=13%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89999876650774435888999999999764
Q gi|254780191|r  398 LDIMQDILCARGLAGIDIISFNQALEEQRSRA  429 (898)
Q Consensus       398 ~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~s  429 (898)
                      +||+..+|+|.|-+ ++-+=|...|+.-|...
T Consensus        19 ldlvrkvaeengrs-~nseiy~rvmes~kreg   49 (53)
T 1baz_A           19 LDLVRKVAEENGRS-VNSEIYQRVMESFKKEG   49 (53)
T ss_dssp             HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCC
T ss_conf             99999999981863-03999999999998725


No 93 
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=20.35  E-value=26  Score=11.74  Aligned_cols=32  Identities=16%  Similarity=0.403  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             899998766507744358889999999997644
Q gi|254780191|r  398 LDIMQDILCARGLAGIDIISFNQALEEQRSRAR  430 (898)
Q Consensus       398 ~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr  430 (898)
                      +||+..+|+|.|-+ ++-+=|...|+.-|...|
T Consensus        19 ldlvrkvaeengrs-~nseiy~rvmes~kregr   50 (64)
T 1nla_A           19 LDLVRKVAEENGRS-VNSEIYQRVMESFKKEGR   50 (64)
T ss_dssp             HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCC
T ss_conf             99999999981863-039999999999987365


No 94 
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=20.24  E-value=22  Score=12.34  Aligned_cols=19  Identities=16%  Similarity=0.291  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             7699999999973067854
Q gi|254780191|r  247 DLFKHLIQASEQVTGMKYE  265 (898)
Q Consensus       247 D~f~pii~~i~~~~g~~y~  265 (898)
                      +++.-++.+|-...|+...
T Consensus       106 ~~~~v~~HEiGHaLGL~Hs  124 (365)
T 3ba0_A          106 NLFLTAVHEIGHSLGLGHS  124 (365)
T ss_dssp             ESSHHHHHHHHHHHTCCCC
T ss_pred             EEEEEEEEHHHHHCCCCCC
T ss_conf             5787751013222057888


No 95 
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=20.21  E-value=22  Score=12.22  Aligned_cols=13  Identities=31%  Similarity=0.409  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             1255677752013
Q gi|254780191|r  576 DYQNRRQLSINHS  588 (898)
Q Consensus       576 D~~rR~~~~~~HT  588 (898)
                      |.+-|..|.++|.
T Consensus       202 ~~~~r~~i~~~~l  214 (499)
T 2dhr_A          202 DVKGREQILRIHA  214 (499)
T ss_dssp             CHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999983


No 96 
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.15  E-value=26  Score=11.71  Aligned_cols=15  Identities=13%  Similarity=-0.086  Sum_probs=6.6

Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             887565766531017
Q gi|254780191|r  213 KQERFILPKMSIDTG  227 (898)
Q Consensus       213 ~g~~~~Lp~~~IDTG  227 (898)
                      -+++.|-|.++.-+|
T Consensus        30 ~~~~~~~~~~~~~~~   44 (464)
T 1m1j_B           30 APTLRPVAPPISGTG   44 (464)
T ss_dssp             ---------------
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             888898899968888


Done!