HHSEARCH alignment of GI: 254780191 and SCOP domain: d1ir6a_

Alignment
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}
Probab=91.73  E-value=0.37  Score=24.30  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=62.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             27999957999789999999999754997899999538981799998677897267989999999988349999998101
Q gi|254780191|r  795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM  874 (898)
Q Consensus       795 ~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~  874 (898)
                      ..++..-++....-+--+|..+.++...+++++ +   ++|.++-   +   ..+++..++++.....+  ++|||- .+
T Consensus       282 ~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~-~---~~kGS~R---s---~~g~~l~~~l~~~~~~l--~~~GGH-~~  348 (385)
T d1ir6a_         282 KAIVLLDPEGHPGVMGIVASRILEATLRPVFLV-A---QGKGTVR---S---LAPISAVEALRSAEDLL--LRYGGH-KE  348 (385)
T ss_dssp             SSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEE-E---TTEEEEE---C---CSSCCHHHHHHTTGGGC--SEEEEC-SS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-E---CCEEEEE---C---CCCCCHHHHHHHHHCHH--HCCCCH-HH
T ss_conf             159995377662022045899999729978999-6---6738776---8---99978999999874530--137991-67


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             145899987889999999998619
Q gi|254780191|r  875 AQSGGPNGNKADQAIAGVASFLKK  898 (898)
Q Consensus       875 AQgGG~~~~~l~eal~~vk~~Lke  898 (898)
                      |=|-.-..+++++..+.+.+++++
T Consensus       349 AaG~~i~~~~~~~F~~~l~~~~~~  372 (385)
T d1ir6a_         349 AAGFAMDEALFPAFKARVEAYAAR  372 (385)
T ss_dssp             EEEEECCGGGHHHHHHHHHHHHHS
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHH
T ss_conf             046797498999999999999985


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Exonuclease RecJ
domain: Exonuclease RecJ
species: Thermus thermophilus [TaxId: 274]