HHSEARCH alignment of GI: 254780191 and SCOP domain: d1j5wa_

Alignment
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=97.88  E-value=6.8e-05  Score=53.59  Aligned_cols=173  Identities=23%  Similarity=0.304  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH---
Q ss_conf             787899999999999789889116675667787100230143475540-0588799999851115432248987863---
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL---   77 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl---   77 (898)
                      |+..+|-.+--+|+.++|+.++.++.+=         +.||  .|-|. |+..--|.--+++=+|||.|-    .|=   
T Consensus         1 m~fq~~i~~L~~~W~~~gC~i~qpyd~e---------vGAg--T~~p~T~lr~lgp~pw~~ayvqpsrRP----~DgRYg   65 (281)
T d1j5wa_           1 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGAG--TFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYG   65 (281)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSSG--GGSHHHHTGGGCSSCEEEEEEEEEECC----C-----
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCCC---------CCCC--CCCHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCC
T ss_conf             9689999999999987897897776554---------4646--687588874049987532343556688----654335


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCC
Q ss_conf             43464885001788854223147537889998998613341898123799971882899997566349998997535786
Q gi|254780191|r   78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN  157 (898)
Q Consensus        78 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~  157 (898)
                      +|--+ -.||.=|..+=-=|..+      |+=-|==..+.+|||+                         .+|=+||- +
T Consensus        66 ~NPNR-lq~y~QfQVi~KPsp~n------~q~lyL~SL~~igid~-------------------------~~hDIrfv-E  112 (281)
T d1j5wa_          66 ENPNR-LQRYFQYQVIIKPSPEN------SQELYLESLEYLGINL-------------------------KEHDIRFV-E  112 (281)
T ss_dssp             CCTTC-CSEEEEEEEEEESCCSS------HHHHHHHHHHHTTCCT-------------------------TTSCEEEE-E
T ss_pred             CCCCH-HHHHHHEEEEECCCCCC------HHHHHHHHHHHCCCCC-------------------------CCCCEEEE-E
T ss_conf             89204-43455302350589412------8999999999819993-------------------------21425787-3


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             66545799999877046788538556898887778898268960011234430478875657665310175799999998
Q gi|254780191|r  158 DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL  237 (898)
Q Consensus       158 dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vl  237 (898)
                      || |+.---|.-|--=||-.|                  ++||--.-.+|   +-.|  .++.--.+.--+||||||+.+
T Consensus       113 Dn-WEsPtlGAwGlGWEVwld------------------GMEItQFTYFQ---QvGg--~~c~pv~~EiTYGLERiaMyl  168 (281)
T d1j5wa_         113 DN-WESPTLGAWGVGWEVWLD------------------GMEITQFTYFQ---QIGG--ISLKDIPLEITYGLERIAMYL  168 (281)
T ss_dssp             EC-CEEGGGTEEEEEEEEEET------------------TEEEEEEEEEE---EBTT--BCCSSCCEEEEEEHHHHHHHH
T ss_pred             CC-CCCCCCCCEEEEEEEEEC------------------CEEEEEEEHHH---HHCC--CCCCCCCHHHHHHHHHHHHHH
T ss_conf             16-768760210222478876------------------73665321635---6368--325653055443289999998


Q ss_pred             CCCCCCCHH
Q ss_conf             879853005
Q gi|254780191|r  238 QEKTNNYDI  246 (898)
Q Consensus       238 qg~~s~ydt  246 (898)
                      ||+.|+||+
T Consensus       169 Q~vd~v~Dl  177 (281)
T d1j5wa_         169 QGVDNVYEV  177 (281)
T ss_dssp             HTCSSGGGC
T ss_pred             HCCCHHEEE
T ss_conf             486404032


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS) alpha chain
species: Thermotoga maritima [TaxId: 2336]