HHSEARCH alignment of GI: 254780191 and SCOP domain: d1riqa2

Alignment
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=865.82  Aligned_cols=235  Identities=54%  Similarity=1.022  Sum_probs=230.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC
Q ss_conf             78789999999999978988911667566778710023014347554005887999998511154322489878634346
Q gi|254780191|r    2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG   81 (898)
Q Consensus         2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~VG   81 (898)
                      ||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||++|+|++|||||+|||||||||||
T Consensus         2 mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~VG   81 (236)
T d1riqa2           2 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG   81 (236)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTTT
T ss_pred             CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             98899999999999867998857877356999974654101022266646764567776444321401167430223138


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCCC
Q ss_conf             48850017888542231475378899989986133418981237999718828999975663499989975357866654
Q gi|254780191|r   82 RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW  161 (898)
Q Consensus        82 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNfW  161 (898)
                      +|+|||||||||||||||||||+|||.|||||||++|+|||+|||||||++|+||+++|.+.+|||++||++++.+||||
T Consensus        82 ~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNfW  161 (236)
T d1riqa2          82 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFW  161 (236)
T ss_dssp             TSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEE
T ss_pred             CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCCC
T ss_conf             76531105554352013860288899999999888851576424787515748998888760482004415337777724


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             57999998770467885385568988877788982689600112344304788756576653101757999999988798
Q gi|254780191|r  162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT  241 (898)
Q Consensus       162 ~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~  241 (898)
                      +||++||||||||||||+|+++.        +++|||||||||||||+|.++|++.|||+|+|||||||||||||+||++
T Consensus       162 ~~g~~GpcGPcsEi~yd~g~~~~--------~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~  233 (236)
T d1riqa2         162 QMGDVGPCGPSSEIYVDRGEEYE--------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN  233 (236)
T ss_dssp             ESSSSEEEEEEEEEEEECCTTSC--------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCCEEEEECCCCCCC--------CCCCEEEEEEEEHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             06897777765347871333337--------8976566311001000106898654388971658966999999985999


Q ss_pred             CCC
Q ss_conf             530
Q gi|254780191|r  242 NNY  244 (898)
Q Consensus       242 s~y  244 (898)
                      |||
T Consensus       234 s~y  236 (236)
T d1riqa2         234 SNF  236 (236)
T ss_dssp             SGG
T ss_pred             CCC
T ss_conf             899


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]