RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(898 letters)
>gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 1221 bits (3161), Expect = 0.0
Identities = 448/906 (49%), Positives = 595/906 (65%), Gaps = 51/906 (5%)
Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
M + IR FL+FF+ GH ++PS+SL+P NDPTL+FTN+GMV FK+ F GQEKP Y
Sbjct: 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPR 60
Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
TT QKC+R NDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT L
Sbjct: 61 ATTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGL 116
Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
+ +LY+TVY++D+EA+ +WKK G+ ++IIRI DNFWSM +TGPCGPCSEIF+D+G
Sbjct: 117 PKEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRG 176
Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
E GG PGS E+G+RYIEIWNLVFMQF + LPK +IDTGMGLER+A VLQ
Sbjct: 177 EEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQG 236
Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
+NY+ DLF+ LI+A E++TG+KYE + V+ RVI DH+R+ +FLIADG+LP+NEGRGY
Sbjct: 237 VHSNYETDLFRPLIKAIEELTGVKYEDD--VSFRVIADHIRAVAFLIADGVLPSNEGRGY 294
Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
VLRRI+RRA+ + RLLG EP + L+P + EMG AYPEL + + LIE+ L++E+ERF
Sbjct: 295 VLRRILRRAVRHGRLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFL 354
Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
KTL+RGL LL+ L+ L ++L+G+ AFKLYDT+G PLD+ +I RGL +D F
Sbjct: 355 KTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGL-TVDEEGFE 413
Query: 420 QALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
A+EEQR RARA G E++ L AT+F+GYD L
Sbjct: 414 AAMEEQRERARAARKFKGDYNALEELLDDL-----ATEFVGYDTLEA------------- 455
Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
+ V A+ GE V+ A +G++VEVV D+TPFYAE+GGQ+GDTG I DG
Sbjct: 456 ----------EAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTG-VIEDG 504
Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
++TD QK G+ VH VE G L+ + +D + RR ++ NHSATHLLH AL
Sbjct: 505 GVFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALR 564
Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
+LG HV+Q GS + PD LRFD +H + +T EL+ IED VN+ I +NLPV T M+ E+
Sbjct: 565 EVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEE 624
Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
A GA AL G KY D VRVVS+ G S LCGGTHVS+TG+I L IVSES + A
Sbjct: 625 AKKMGAMALFGEKYGDEVRVVSI-----GDFSIELCGGTHVSNTGDIGLFKIVSESGVAA 679
Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
G+RRIEA+TG+ A +L Q+ LK LA+ LK + RVE + EE ++L +L K
Sbjct: 680 GVRRIEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEKELEQLK 739
Query: 777 RKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
KL DL ++ V ++ + VD+K L+++ D L+ K+ SG+++L +
Sbjct: 740 AKLAAAAAGDLLAQAKEVNGVKVLAAQVEGVDAKALRTLADDLKDKLGSGVVVLATVEDG 799
Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
K S+++ VT+DL D+ A DL + AK++ GG GGGRP MAQ+GG + K D+A+A V
Sbjct: 800 -KVSLVVAVTKDLTDKGLKAGDLVKELAKIV-GGKGGGRPDMAQAGGKDPAKLDEALAAV 857
Query: 893 ASFLKK 898
+L
Sbjct: 858 KEWLAA 863
>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP).
Length = 851
Score = 840 bits (2171), Expect = 0.0
Identities = 402/892 (45%), Positives = 557/892 (62%), Gaps = 61/892 (6%)
Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
IR TFL+FF++ GH+++PS+SL+P NDPTL+ TN+GM FK IFTG KP + Q
Sbjct: 2 IRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQP 61
Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
C+R ND++NVGRT RHHTFFEMLGNFSFG YFKE AI AW+LLT LD+ RLY
Sbjct: 62 CIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLY 117
Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
+TVY++DEEA+++W+K G+ A++IIR DNFW M + GPCGPC+EI++D+GE + G
Sbjct: 118 VTVYEDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGK 175
Query: 186 -GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
G P EE +RY+E+WNLVFMQF + LPK +IDTGMGLER VLQ NY
Sbjct: 176 PGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNY 235
Query: 245 DIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIADGILPA 293
D D+F LI+ E++TG+KY+ NN + + RVI DH R+ +F++ADG++P+
Sbjct: 236 DTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPS 295
Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
NEGRGYVLRR++RRA+ + + LG E + L+P L +G YPEL + + +E+ L
Sbjct: 296 NEGRGYVLRRLIRRALRHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILEL 355
Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
E+ERF KTL+RGL L + +L LGK E L+G+ AFKLYDT+G P+++ ++I RGL +
Sbjct: 356 EEERFAKTLERGLRLFEKLLKKLGKKE-LDGEDAFKLYDTYGFPVELTKEIAEERGLT-V 413
Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
DI F + EQR R++A S + E +L Y AT+F+GY+
Sbjct: 414 DIPGFETLMAEQRERSKAASQTIS---FELQEIALANVYPATEFLGYE------------ 458
Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
+ V + + G+ V+EA +GQ V V+ DQTPFYAE+GGQ+GDTG
Sbjct: 459 -----------DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGY 507
Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
I + + ++ DVQK G+ H VE G L+ ++ ID + R ++ NHSATHLL
Sbjct: 508 LIANDGKFRVVDVQK-PNGVVFHFGEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLL 566
Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
H AL +LG+HV Q GS ++ LRFD +H + +T EL+ IED VN+ I N+P+
Sbjct: 567 HAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVIF 626
Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
M+ ++A A GA AL G KY ++VRVVSV G V S LCGGTHV +TGEI L IV E
Sbjct: 627 MDLDEAKAKGAFALFGEKYGEKVRVVSV----GDV-SVELCGGTHVRNTGEIGLFKIVKE 681
Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
S I AG+RRIEA+TG A +L Q++KLK LA LKV+ + ++E +EE++ LQ
Sbjct: 682 SGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKE 741
Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828
L K K+ D K +N + ++ VD+ K LK++ D L+ K+ S I +L
Sbjct: 742 LESLKLKIADQKIDELKDKAETINGVKVLVEVVDAKDMKSLKTMADRLKSKLGSAIYVLA 801
Query: 829 GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
+ K ++ V+ D+L+ A +L A+VL GG GGGRP +AQ+GG
Sbjct: 802 SFA-NGKVKLVCGVSNDVLNKGIKAGELINQIAQVL-GGKGGGRPDLAQAGG 851
>gnl|CDD|178488 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 793 bits (2049), Expect = 0.0
Identities = 363/963 (37%), Positives = 502/963 (52%), Gaps = 111/963 (11%)
Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
IR TFL FF+ GH LPSS L+P +DPTL+FTN+GM FK IF G P +
Sbjct: 14 DRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLP 73
Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
+A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLTK +
Sbjct: 74 RATNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVY 132
Query: 119 DLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
L RLY T + DE EA +W L ++++ DNFW M +TGPCGPC
Sbjct: 133 GLPADRLYATYFGGDEKQAPDDEARAIWLDY--LPEERVLPFGCKDNFWEMGDTGPCGPC 190
Query: 173 SEIFFDQGECIPG-GLPGSSEEGE-RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
SEI +D+ I + R+IEIWNLVF+QF ++ LP +DTGMGL
Sbjct: 191 SEIHYDR---IGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGL 247
Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIV----------NHRVIVDHL 279
ER+A++LQ K +NYD DLF + A ++ TG + Y G V +RV+ DH+
Sbjct: 248 ERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAG--KVGAEDDDRVDMAYRVVADHI 305
Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYP 338
R+ SF IADG++P+NEGRGYVLRR++RRA+ Y RLL E L+ + G +P
Sbjct: 306 RTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFP 365
Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396
E+ + + I E + E+ FGKTL++G+ L+ + +L+G AF LYDT+G
Sbjct: 366 EVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLYDTYGF 425
Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-----KIWFSLKEK 451
P+D+ + + RG+ +D+ F A+EE R R+RA L G G E W +
Sbjct: 426 PVDLTELMAEERGVT-VDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSWLQKQGV 484
Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
F+ YD L ++VKAI+ G VE G +V
Sbjct: 485 AATDDFLKYDWLSDH----------------------EAVVKAILTGGGFVESVSEGDEV 522
Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
+V D+T FYAE+GGQ+GDTG G G ++++DVQK G +H V G + +
Sbjct: 523 GIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAG-GFVLHIGTVTEGSVSVGDA 581
Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
+ +DY RR+++ NH+ATHLL+ AL +LG HV Q GS + + LRFD +H KP+T
Sbjct: 582 VTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641
Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH 689
EL+ +E VN+ I LPV + M DA +G A+ G KY D VRVVSV GGV+
Sbjct: 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSV----GGVY 697
Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
S LCGGTHVS+T E ++SE I GIRRI A+TG A + D + L S L
Sbjct: 698 SMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSAL 757
Query: 750 KVSQGN------------------------VVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
KV + + RV + +E R Q K L +
Sbjct: 758 KVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQ----KEAAALRAKL 813
Query: 786 LSCHKIADVN---------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-K 835
+ ++ + VD+ LK + + K+ +++ +EK K
Sbjct: 814 AVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGK 873
Query: 836 ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
S++ V ++ A AK L GGGGGG+P AQ G + K D A+ +
Sbjct: 874 VSLVAAVPPGVVKKGLKAGKWLGAIAK-LCGGGGGGKPGFAQGQGRDAEKLDAALEKARA 932
Query: 895 FLK 897
F
Sbjct: 933 FAV 935
>gnl|CDD|184382 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 404 bits (1041), Expect = e-113
Identities = 262/973 (26%), Positives = 430/973 (44%), Gaps = 211/973 (21%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPC--NDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
+ +R FL FF+K+GH + ++ +D + T + + F+ T G P
Sbjct: 60 TLKEMREKFLSFFEKHGHTRIERYPVVARWRDD--VYLTIASIYDFQPWVTSGLVPPPAN 117
Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF-----GGYFKERAIQLAWDLL 114
+ Q C+R ND+DNVGRT RH T FEM+ + +F Y+K+ ++ ++
Sbjct: 118 PLVISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFF 173
Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
TKE L I D +E FK +++W G GPC E
Sbjct: 174 TKE-------LGI---DPEEITFK-------------------ESWW--EGGGNAGPCFE 202
Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERM 233
+ GL E+ LVFMQ+++ R++ +P +DTG GLER+
Sbjct: 203 VLV-------RGL-----------ELATLVFMQYKKDG--NRYVEMPLKIVDTGYGLERI 242
Query: 234 ATVLQEKTNNYD------IDLFKHLIQASE----------QVTGMK--YEGNNIVNHR-- 273
A Q YD +D K E ++ G+ E ++ + R
Sbjct: 243 AWASQGTPTAYDAIFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQK 302
Query: 274 -----------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
I DH R+ +F++ DGI+P+N G GY+ R ++RR +
Sbjct: 303 VAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLR 362
Query: 311 YARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
LG PL M + E+ YPEL + + I + + E+E++ +TL+RG
Sbjct: 363 LLDELGLDVPLSELVDMQI-----DELKEDYPELKENRDYILDIVDLEEEKYRETLERGK 417
Query: 367 VLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
+++ + + D+++ +LYD+HG+P +I+++I +G +++ +L
Sbjct: 418 RIVERLAKKKEEIPLDDLI------ELYDSHGIPPEIVKEIAKKKG-VEVEVPDNFYSLV 470
Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-DRKVLCQKPPI 482
+R H + + T+ + Y+ +M+E + KVL
Sbjct: 471 AER-----HEKAEEEEEEPVVEEERLKDLPETEKLFYE----DPYMREFEAKVL------ 515
Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
+++ VV DQT FY E GGQ DTG I DG +
Sbjct: 516 -----------------GVIDN-------YVVLDQTAFYPEGGGQPADTGVLIVDGKGYK 551
Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
+ DVQK G+ VH +E + + ID++ R +L +H+ATH++ A +LG
Sbjct: 552 VVDVQKV-GGVIVHV--LEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLG 608
Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
HV Q G+ T D R D+TH K IT E+K IE N+I+ +N PV M+R +A
Sbjct: 609 DHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQ- 667
Query: 663 GAAALLGTKY-----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
KY +RVV + D V + CGGTHVS+TGEI + I+
Sbjct: 668 --------KYGFRLYQGGVPPGKTIRVVEIGDWD--VEA---CGGTHVSNTGEIGPIKIL 714
Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYR 768
I+ G+ R+E G A ++ ++ LK A L V + VE W+E +
Sbjct: 715 KTERIQDGVERLEFAAGDAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQK 774
Query: 769 KLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGII 825
K ++ +++L +L +L K +V + ++ EV D EL+ + + L K+ + ++
Sbjct: 775 K-EIEKLRKELAELLASELL-SKAEEVGGVKVVVEEVDADEDELRKIANELAKEGKVALV 832
Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
+ +++ V ED+ NA ++ R AKVL GG GGG+P +AQ GGP+ K
Sbjct: 833 ----VLGNGGGQIVVGVGEDVG--VNAGEIVRELAKVL-GGKGGGKPDLAQGGGPDPKKK 885
Query: 886 DQAIAGVASFLKK 898
++A+ LK+
Sbjct: 886 EEALEAAKEVLKE 898
>gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 375 bits (965), Expect = e-104
Identities = 264/965 (27%), Positives = 419/965 (43%), Gaps = 189/965 (19%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
+ +R FL FF+K+GH + ++ + T + + F+ T G P +
Sbjct: 57 TLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPL 116
Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
Q C+R ND+DNVGRT RH T FEM+ + +F Y+K+ ++ ++ L
Sbjct: 117 VISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLE- 171
Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
L I D +E +K ++ W G GPC E+
Sbjct: 172 -------ELGI---DPEEITYK-------------------ESPW--EGGGNAGPCFEVI 200
Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
GGL E+ LVFMQ+E+ + E I +P +DTG G
Sbjct: 201 V-------GGL-----------ELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYG 242
Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------- 270
LER Q YD +F ++ ++ G++ I+
Sbjct: 243 LERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLR 301
Query: 271 NHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
R I DH R +F++ DGI+P+N GY+ R ++
Sbjct: 302 ELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVI 361
Query: 306 RRAMCYARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
RR + R LG PL M L E+ YPEL + K I + L E+E++ +T
Sbjct: 362 RRTLRLMRELGLDIPLSDLVEMQL-----EELKKIYPELKENKDYILDILDLEEEKYRET 416
Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII-SFNQ 420
L+RG +++ +L K EI D+ +LYD+HG+P +I+++I G A ++I +F
Sbjct: 417 LERGRRIVERLLK--TKKEIPLDDLI-ELYDSHGIPPEIVKEIAAELG-AEVEIPDNFYS 472
Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-DRKVLCQK 479
+ E+ + K + + T+ + Y+ M+E + KVL
Sbjct: 473 IVAERHEKEEKEE------ELPKDYEERAKDLPETRRLFYE----DPTMREFEAKVL--- 519
Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
+ + VV DQT FY E GGQ DTG I +G
Sbjct: 520 --------------------GVFDN-------YVVLDQTAFYPEGGGQPADTGYLITNGG 552
Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
++++ DVQK G+ VH V+ ++ + ID++ R +L +H+ATH+L A
Sbjct: 553 KIRVVDVQKV-GGVIVH--KVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARR 609
Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
+LG HV Q G+ D R D+TH K I+ E+K IE N I+ +N PV + M+R +A
Sbjct: 610 VLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEA 669
Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
L G +RVV +E D CGGTH +TGEI + I+ I+
Sbjct: 670 EQKYGFRLYQGGVPPGREIRVVEIEDWD-----VQACGGTHCRNTGEIGPIKILKTERIQ 724
Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---EIWEEYRKLQLIH 774
G+ RIE G+ A ++ ++ L+ + LKV + V+ E W+E RK +
Sbjct: 725 DGVERIEFAAGEAALEYIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKE-IER 783
Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
K+KL + + + I+ + D EL+ + + L +K G+++++
Sbjct: 784 LKKKLAELKIYELISEAERIGGVEVIVELVDADMDELQEIAEKLAEK---GLVVVLVSGG 840
Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
V+I E +A +L R AK L GGGGGG+P +AQ GGP+ K D+A+ +
Sbjct: 841 GGNGRVVISSGEKA--GVDAGELVREIAKEL-GGGGGGKPDLAQGGGPDDLKIDEALEKI 897
Query: 893 ASFLK 897
SFL+
Sbjct: 898 KSFLR 902
>gnl|CDD|179306 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 343 bits (882), Expect = 9e-95
Identities = 164/448 (36%), Positives = 258/448 (57%), Gaps = 32/448 (7%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
+ +R +++FF+ GH + SLIP NDPT++FT +GM P G+ P +
Sbjct: 2 TLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLV 61
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
VQKC+R G D+D VG H TFFEMLGN+S G YFKE +I+ +++ LT ++
Sbjct: 62 DVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNI 116
Query: 121 DQRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCS 173
+ +LY+TV+ DE DEE +W+ + G+ D+I ++ N+W ETGPCGP +
Sbjct: 117 PKDKLYVTVFEGDEEIPRDEETASVWESL-GIPKDRIFYLSREHNWWGPVGETGPCGPDT 175
Query: 174 EIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
EIF D G C P G +Y EIWN VFMQ+ + L + +DTG
Sbjct: 176 EIFVDTGKPKCSVNCRPTCSCG------KYFEIWNNVFMQYNKDEDGNYEELKRKCVDTG 229
Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
MG+ER LQ K++ YD + F +I+ E+++G Y N + + R+I DH+R++ F+
Sbjct: 230 MGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNEEDDRSIRIIADHIRAACFI 289
Query: 286 IAD--GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
+ D +LP+N G+GYVLRR++RR++ +A+ LG + L+ ++ GS YPEL +
Sbjct: 290 LGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKLGIESHFLADLVDSVEEIYGSFYPELTEK 349
Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
K I+E L E+E+F KTL +G ++ +LG +I+ GD+AFKLYDT+G P +I ++
Sbjct: 350 KDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEE 409
Query: 404 ILCARGLAGIDIISFNQALEEQRSRARA 431
+ G +D F++ ++ + ++
Sbjct: 410 LASEYGFT-VDREGFDEHFKKHQKVSKK 436
Score = 144 bits (364), Expect = 1e-34
Identities = 67/140 (47%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
H+ATHLLH AL +LG HV Q GS IT + LRFD +H + +T E+K +ED VN I +
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
L V +M+ E+A GA AL G KY D V+V YE G S +CGG HV +TGE+
Sbjct: 517 LSVKKEVMSLEEAREKGAMALFGEKYEDIVKV----YEIDG-FSKEVCGGPHVENTGELG 571
Query: 707 LLYIVSESSIRAGIRRIEAI 726
I E S +G+RRI AI
Sbjct: 572 TFKIQKEQSSSSGVRRIRAI 591
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 69.0 bits (169), Expect = 5e-12
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 511 VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
+ +V D+T F+ + GGQ DTG G + + DV++K +G+ H+ + E +
Sbjct: 3 IALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRK-DGVVYHYGVFEGSNPESA 61
Query: 569 M------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
+ +T+D R+ S HSA HLL ++ + + PDG +
Sbjct: 62 SPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYK 121
Query: 623 HSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---- 676
P + +E N++IA+ V ++ ++ AA L G D +
Sbjct: 122 GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDE-----AAELCGGSLPDYIAKDS 176
Query: 677 --RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
R+V + G CGGTHV+ EI
Sbjct: 177 TPRIVKI-----GDSPGCPCGGTHVADVSEI 202
>gnl|CDD|129096 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 44
Score = 60.5 bits (148), Expect = 2e-09
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
VRVVS+ G LCGGTHV +TGEI I+S S G++RI
Sbjct: 1 VRVVSI-----GDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44
>gnl|CDD|149189 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 59.4 bits (145), Expect = 4e-09
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
VRVV + G LCGGTHV +TGEI I+ S G++RI
Sbjct: 1 VRVVRI-----GDFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRIY 44
>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 58.6 bits (143), Expect = 6e-09
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 585 INHSATHLLHHALSTI-----LGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIE 636
I HSA H+L A+ + LG I P DG +D +P T +LK IE
Sbjct: 9 IRHSAAHVLAQAVQELFPDAKLG---------IGPPIEDGFYYDFDVPEPFTPEDLKKIE 59
Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVV-SVEYEDGGVHS 690
+ II + LP ++RE+A A L+ + + + + ++ED
Sbjct: 60 KKMKKIIKRGLPFEREEVSREEAREEFANEPYKLELIDDIPEEGITIYDNGDFED----- 114
Query: 691 SALCGGTHVSSTGEI 705
LC G HV +T I
Sbjct: 115 --LCRGPHVPNTKFI 127
>gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 55.9 bits (136), Expect = 4e-08
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 37/140 (26%)
Query: 585 INHSATHLLHHAL-----STILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIE 636
I HSA HLL A+ L I P +G +D +P T +L++IE
Sbjct: 71 IRHSAAHLLAQAVKRLYPDAKLT---------IGPVIENGFYYDFDRERPFTPEDLEAIE 121
Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY----------NDRVRV-VSVEYED 685
+ +II +N P+ +++RE+AI G Y ++ + + E+ D
Sbjct: 122 KEMKEIIKENYPIEREVVSREEAIELFKD--RGEPYKVELIEEIPEDEEISLYRQGEFVD 179
Query: 686 GGVHSSALCGGTHVSSTGEI 705
LC G HV STG+I
Sbjct: 180 -------LCRGPHVPSTGKI 192
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 45.5 bits (108), Expect = 6e-05
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
HSA H+L A+ + G V+ + +G +D+ + +L+ IE + II +N
Sbjct: 77 HSAAHILAQAVKRLYGD-VNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINEN 135
Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGG 696
+ + ++RE+A L + NDR+++ +E Y+ G LC G
Sbjct: 136 IKIERVEVSREEAAK------LFQEMNDRLKLELLEAIPSGESITLYKQGEFVD--LCRG 187
Query: 697 THVSSTGEI 705
H+ STG +
Sbjct: 188 PHLPSTGYL 196
>gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether..
Length = 563
Score = 43.5 bits (103), Expect = 3e-04
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 587 HSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
HS HLL AL L DG +D + T +L+ IE ++ +
Sbjct: 2 HSIAHLLAEALKQLYPDVKLAIGPVVE------DGFYYDFELDRSFTQEDLEKIEKDMKE 55
Query: 642 IIAQNLPVVTRIMNREDAIASGA------AALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
I +N PV ++ E+A+ + LL N R + V LC
Sbjct: 56 IAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDEIPNGVKRTP-YGWGKAFVD---LCK 111
Query: 696 GTHVSSTGEI 705
G H+ +T I
Sbjct: 112 GPHLPNTSFI 121
>gnl|CDD|178431 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 42.2 bits (99), Expect = 7e-04
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
+VL + + + L I H+ H++ A+ + G I +G +D +P+
Sbjct: 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFD-MEPL 86
Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-------ALLGTKYNDRVRVVS 680
T +LK I+ ++ II++NLP+V ++RE+A A +L + + +
Sbjct: 87 TDKDLKRIKKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYH 146
Query: 681 V--EYEDGGVHSSALCGGTHVSSTGEI 705
+ E+ D LC G HV TG+I
Sbjct: 147 IGEEWWD-------LCAGPHVERTGKI 166
>gnl|CDD|181790 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.
Length = 283
Score = 30.1 bits (69), Expect = 2.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 229 GLERMATVLQEKTNNYDID 247
GLER+A LQ N YD+
Sbjct: 163 GLERLAMYLQGVDNVYDLV 181
>gnl|CDD|164900 PHA02107, PHA02107, hypothetical protein.
Length = 216
Score = 29.2 bits (65), Expect = 4.6
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
+DL NG + VK + + E+V + + Q F+A +
Sbjct: 125 VDLPNGDKAPVKNVETKTEVVSTVDYTEPAKEPDGQNIFFAPETMK 170
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family
protein.
Length = 348
Score = 29.2 bits (65), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 124 RLYITVYDEDEEAFKLWKKI 143
RLY+T Y ED+ K W ++
Sbjct: 137 RLYLTTYPEDQRQLKFWPQV 156
>gnl|CDD|149661 pfam08678, Rsbr_N, Rsbr N terminal. Rsbr is a regulator of the RNA
polymerase sigma factor subunit sigma(B). The structure
of the N terminal domain belongs to the globin fold
superfamily.
Length = 129
Score = 28.4 bits (64), Expect = 8.2
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDL--LTKEFDLDQRRLYITVYDE---DEEAF 137
T + F E L F+ ER +QL W L LTK ++ +Y + DE D+++
Sbjct: 50 TGGNEEFEEKLSEFA------ERIVQLGWPLKLLTKGLQEFRKVVYEKMNDEDPDDQQSL 103
Query: 138 KLWKKI 143
+L +I
Sbjct: 104 ELIWEI 109
>gnl|CDD|185458 PTZ00120, PTZ00120, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.
Length = 154
Score = 28.4 bits (64), Expect = 8.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
M +I V S + +V + I G+++LVGI +E
Sbjct: 1 MRVVIQRVLSASV-TVEGEVVGSIGKGLVLLVGIHEEDTWE 40
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 28.4 bits (64), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
L +G +S VK IV ++EA +GQ V +
Sbjct: 277 LPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTL 308
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 14,693,374
Number of extensions: 994205
Number of successful extensions: 2109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2035
Number of HSP's successfully gapped: 31
Length of query: 898
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 796
Effective length of database: 3,790,457
Effective search space: 3017203772
Effective search space used: 3017203772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)