RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (898 letters) >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:1-237) Length = 237 Score = 339 bits (871), Expect = 8e-94 Identities = 127/238 (53%), Positives = 169/238 (71%), Gaps = 8/238 (3%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ QK Sbjct: 8 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + +LY Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE G Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 186 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N+ Sbjct: 187 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 237 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:1-252) Length = 252 Score = 333 bits (854), Expect = 7e-92 Identities = 143/250 (57%), Positives = 181/250 (72%), Gaps = 10/250 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI +DNFW M +TGPCGPC+ Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DT MGLER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242 Query: 233 MATVLQEKTN 242 +A VLQ + Sbjct: 243 IAAVLQHVNS 252 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266) Length = 266 Score = 234 bits (598), Expect = 4e-62 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 74/257 (28%) Query: 7 IRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAVT 62 +R FL FF+ + H + ++P ++ + ++ F+ +G+ P + Sbjct: 62 MREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLV 121 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKE 117 Q +R D+DNVG T RH T FEM+ + +F Y+ + ++LA++ TKE Sbjct: 122 ISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKE 177 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 + + +N W+ G GP E+ + Sbjct: 178 LXMXPEDIT-----------------------------FKENPWAG--GGNAGPAFEVLY 206 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPKMSID 225 +E+ LVFMQ+ ++ + +D Sbjct: 207 R------------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVD 248 Query: 226 TGMGLERMATVLQEKTN 242 TG GLER+ + Q Sbjct: 249 TGYGLERLVWMSQGTPT 265 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:1-260) Length = 260 Score = 223 bits (569), Expect = 9e-59 Identities = 53/248 (21%), Positives = 84/248 (33%), Gaps = 67/248 (27%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66 R +L FF++ GH + ++ + T + + F+ T G P +T Q Sbjct: 66 REYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQP 125 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLD 121 C+R +DLD+VGRT RH T FE + +F Y+K + +LL + Sbjct: 126 CIR----LDDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNEL---- 177 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 G+ + I + W+ G GPC E Sbjct: 178 -----------------------GVKKE---DIVYKEEPWAGG--GNAGPCLEAIVG--- 206 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-------PKMSIDTGMGLERMA 234 +E+ LVF E+ + + I +DTG GLER Sbjct: 207 ---------------GLEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGLERFV 251 Query: 235 TVLQEKTN 242 + Sbjct: 252 WASKGTPT 259 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:261-423) Length = 163 Score = 187 bits (476), Expect = 6e-48 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 21/174 (12%) Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253 E I + + F +++++ R I+ + S G+ + L Sbjct: 6 PEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIX------------GELRGERLNQLR 53 Query: 254 QASEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 ++ G+ E + + DH R F + DG++P+N G GY+ R +RR+ Sbjct: 54 KSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLARLXIRRS 113 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 + A L L L+ +G + + ++E L E ER+ T+ Sbjct: 114 LRLAEELELGLDL-YDLVEXHKKILGFEFDVPLS---TVQEILELEKERYRTTV 163 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:267-426) Length = 160 Score = 167 bits (425), Expect = 4e-42 Identities = 31/155 (20%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 219 LPKMSIDTGMGLERMATVLQEKT-------NNYDIDLFKHLIQASEQVTGMKYEGNN--- 268 + + + G+E++ + + + D+ ++L + + G+ E Sbjct: 8 VVEP-LXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAI 66 Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 I DH ++ +F++ADG++P+N GY+ R ++R+++ + R LG PL ++ Sbjct: 67 RPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVPL-SEIV 125 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 E+ +PE + + +I E + E++ + +T Sbjct: 126 ALHIXELHKTFPEFXEMEDIILEMIELEEKXYAET 160 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:253-368) Length = 116 Score = 153 bits (389), Expect = 6e-38 Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 2/118 (1%) Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P+NE RGYVLR Sbjct: 1 NYDIDLFRTLIQAVAKVTGATDLSN--KSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 58 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 RI+RRA+ + +LG E L+ L MGSA +L + + +E+ L++E+E+F + Sbjct: 59 RIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFAR 116 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:238-355) Length = 118 Score = 149 bits (377), Expect = 2e-36 Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 245 DIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 +ID+ LIQ E+V+G KY V RVI DHLR+ +F I+DG++P+NEGRGYV+R Sbjct: 1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIR 60 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 RI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF K Sbjct: 61 RILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 118 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:603-752) Length = 150 Score = 128 bits (323), Expect = 3e-30 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R Q +H+ TH+L AL +LG HV Q GS +T D R D++H I+ EL IE Sbjct: 1 WXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIE 60 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 N I+ ++ V + R A L + V ED GG Sbjct: 61 MLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIED---WDVQAXGG 117 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 TH+ STG + + I+ I+ G+ RI G+ Sbjct: 118 THLPSTGLVGPIXILRTERIQDGVERIIFACGE 150 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:590-739) Length = 150 Score = 126 bits (317), Expect = 1e-29 Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + +HSATH+L ++L +LG+HV Q G+ R DVTH + + E+K IE Sbjct: 4 RWRHXRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLA 63 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I N P+ +R +A L G R V G A CGGTH Sbjct: 64 NREILANKPIKWEWXDRIEAERKFGFRLYQGGVPPGRKIRVVQ----VGDDVQA-CGGTH 118 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 STGEI L I+ SI+ G+ R E G+ Sbjct: 119 CRSTGEIGXLKILKVESIQDGVIRFEFAAGE 149 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} (A:64-224) Length = 161 Score = 122 bits (308), Expect = 1e-28 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 I HS HLL HA+ L H + +G +DV + +T +++++E + Sbjct: 3 EGLEIIRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRM 61 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGG 696 +++ +N V+ + ++ +A + A K + ++ + + G +C G Sbjct: 62 HELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRG 121 Query: 697 THVSSTGEIMLLYIVSESSI-------RAGIRRIEAI 726 HV + ++ + ++RI Sbjct: 122 PHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGT 158 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:129-271,A:422-557) Length = 279 Score = 121 bits (303), Expect = 5e-28 Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 32/270 (11%) Query: 5 SSIRTTFLEFFQKNGHELL--PSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I + F +G + P + S + K Q +++ + Sbjct: 14 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLL 73 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG-NFSFGGY-----FKERAIQLAWDLLTK 116 + R + F + SF E ++ W + Sbjct: 74 MMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKG 133 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKK-ISGLSADKIIRIT----------TNDNFWSMAE 165 D + + + LW D +T A Sbjct: 134 VDLGDFPVM------TESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAA 187 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------ 219 + G + GG + ++ ++ + E+Q ++ F+L Sbjct: 188 PENAVANAYDMVINGYEVGGGSVRIHNG-DMQQTVFGILGINEEEQREKFGFLLDALKYG 246 Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLF 249 GL+R+ +L N D+ F Sbjct: 247 TPPHAGLAFGLDRLTMLLTGTDNIRDVIAF 276 >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} (A:) Length = 157 Score = 120 bits (303), Expect = 5e-28 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 5/155 (3%) Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 HSA H++ A+ +LGS + + + V + + E++ IE Sbjct: 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERL 61 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697 N+ + +N P+ + RE+A + + VR++ V + + C Sbjct: 62 ANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKE 119 Query: 698 HVSSTGEIMLLYIVS-ESSIRAGIRRIEAITGQRA 731 H +TGEI + I G+ I + Sbjct: 120 HTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELE 154 >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens atcc 13124} (A:89-241) Length = 153 Score = 117 bits (293), Expect = 8e-27 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 11/163 (6%) Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R H HLL + G++ G + + D+ + ++ E Sbjct: 1 ERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIVG--FLDEKTIREAEK 56 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N +I +NL V + ++++ L + E G+ +A C G Sbjct: 57 EANRLIFENLEVKSYAPSKKELKKVKTRRALPKTDEEIRI-----VEIVGLDLNA-CCGV 110 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 H +T ++ ++ I RIE + G RA S Sbjct: 111 HPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSEGHHHHH 152 >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} (A:89-216) Length = 128 Score = 110 bits (275), Expect = 1e-24 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 26/151 (17%) Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSI 635 + R +L H+ HLL H L+ +LG Q GS ++ + R+D+ + + + + I Sbjct: 1 WDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKYKEQI 59 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 N + + V CG Sbjct: 60 ISLFNKYVDEGGEVKIWWEGDRRYT----------------------QIRD--FEVIPCG 95 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 GTHV EI + + SSI G +R+E Sbjct: 96 GTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 126 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} (A:) Length = 294 Score = 108 bits (270), Expect = 2e-24 Identities = 42/274 (15%), Positives = 75/274 (27%), Gaps = 21/274 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +FF K G + L + P DP GM P + G + + ++ Sbjct: 19 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMIL 78 Query: 64 VQKCVRAGG---------KHNDLDNVGRTNRHHTFFEMLG----------NFSFGGYFKE 104 ++ A G RH F L Sbjct: 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVY 138 Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164 + A + +EF +R + EE K + I + + Sbjct: 139 GLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREV 198 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 + + + GE GG E+ I L F + + K S Sbjct: 199 DGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 258 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 G+G+ER+ + + ++ F + Sbjct: 259 AGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:356-465) Length = 110 Score = 100 bits (250), Expect = 9e-22 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%) Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ F Sbjct: 1 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 59 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 LEEQR RAR H + ++ LKE + F+G L Sbjct: 60 QCELEEQRERARKHFKVEA-KKVKPVYSHLKELGKTSAFVGAAALEHH 106 >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} (A:) Length = 111 Score = 97.1 bits (242), Expect = 9e-21 Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 + D + EV+ +EL+++ D L+++ + ++ + +K + +I V++++ D+ Sbjct: 5 NVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGDK-INFVIGVSKEISDK 63 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 NA ++ R KVL GGGGG R +AQ GG +K +A+ + L Sbjct: 64 VNAKEVIREVGKVLKGGGGG-RADLAQGGGKAPDKFPEAVKLLKEILS 110 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:369-441) Length = 73 Score = 86.2 bits (214), Expect = 1e-17 Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL LLD L+ L D + +G+ AF+LYDT+G P+D+ D+ R + +D F Sbjct: 1 TLERGLALLDEELAKLSGDTL-DGETAFRLYDTYGFPVDLTADVCRERNI-KVDEAGFEA 58 Query: 421 ALEEQRSRARAHS 433 A+EEQR RAR S Sbjct: 59 AMEEQRRRAREAS 71 >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} (A:27-171) Length = 145 Score = 84.5 bits (209), Expect = 6e-17 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 755 NVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELK 810 + VE +EE++ + + K + D+ + + + + + D + L+ Sbjct: 3 KLPKTVERFFEEWKDQRKEIERLKSVIADLWADILXERAEEFDSXKVVAEVVDADXQALQ 62 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + + L +K + + E K V+ + +A +L R +V G GGG Sbjct: 63 KLAERLAEKG---AVGCLXAKGEGKVFVVTFSGQKY----DARELLREIGRVAKGSGGG- 114 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 R +AQ ++ + + FL + Sbjct: 115 RKDVAQGAVQQLLDREEXLDVIFRFLSE 142 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} (A:66-134,A:188-224) Length = 106 Score = 83.9 bits (208), Expect = 7e-17 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 + HS HL+ HA+ + G +V + G +D + I+S + + IE + Sbjct: 3 EALEVLRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTM 61 Query: 640 NDIIAQNL 647 I+ +N+ Sbjct: 62 KQIVNENM 69 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:504-602) Length = 99 Score = 83.3 bits (206), Expect = 1e-16 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Query: 489 SSIVKAIVQQGEIVEEA----VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + + + + E + V+ D T FY E GGQ DTG I +G + +T Sbjct: 10 LPDTRRLYYEDPFMXEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVT 69 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +VQ G + H + + G M + ID Sbjct: 70 NVQ--XVGXVIIHXVEDPGAFXEGMIVHGXID 99 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:495-589) Length = 95 Score = 79.1 bits (195), Expect = 2e-15 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 36/130 (27%) Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 +L+ +Y AT+ + YD E E + Sbjct: 2 TLQNEYPATEKLYYDDP---------------------------------TLLEFEAEVI 28 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 + V+ +++ FY E+GGQ D G I +G + ++ DV + G+ +H +V+ Sbjct: 29 GVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEAD-GVVLH--VVKGAKPE 85 Query: 567 TEMSLVLTID 576 + ID Sbjct: 86 VGTKVKGVID 95 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:427-503) Length = 77 Score = 76.6 bits (189), Expect = 1e-14 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII-SF 418 L RG L+ ++ L K + + + Y++HGL +I+ +I G+ ++I +F Sbjct: 1 LRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVK-VNIPDNF 59 Query: 419 NQALEEQRSRARAHS 433 + ++ R + Sbjct: 60 YSMVAKEAERTKEEK 74 >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} (A:1-88) Length = 88 Score = 72.1 bits (177), Expect = 3e-13 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 E + + ++ DQT FY GGQ D G I +++ DV K EG V H + Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGT-IN---GVEVLDVYKDEEG-NVWHVV 71 Query: 560 VERGILRTEMSLVLTID 576 E + + L ID Sbjct: 72 KEPEKFKVGDEVELKID 88 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:424-494) Length = 71 Score = 70.0 bits (172), Expect = 1e-12 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS-FNQAL 422 +G L++ ++ K L D +LYD+HG+P+++ I +G ++ L Sbjct: 2 KGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKGAE-VEXPKDIYAEL 57 Query: 423 EEQRSRARAHS 433 ++ S+A Sbjct: 58 AKRHSKAEKVQ 68 >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens atcc 13124} (A:1-88) Length = 88 Score = 66.8 bits (163), Expect = 1e-11 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 +GEI+E K V+ DQT F+ GGQ+GD G G +++ DV ++ G H Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEE-GKVYH- 70 Query: 558 AIVERGILRTEMSLVLTIDY 577 V + +L +D+ Sbjct: 71 --VLEKEPKKLKNLQCELDW 88 >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} (A:64-130,A:194-224) Length = 98 Score = 35.4 bits (82), Expect = 0.032 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDNVN 640 I HS HLL HA+ + + + I P +G +DV + +T +++++E ++ Sbjct: 8 IRHSCAHLLGHAIKQLWPHTKM-----AIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMH 62 Query: 641 DIIAQNLPVVTRI 653 ++ ++ + + Sbjct: 63 ELAEKHHFKLMKT 75 >1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} (B:) Length = 1026 Score = 32.4 bits (71), Expect = 0.27 Identities = 9/31 (29%), Positives = 9/31 (29%), Gaps = 9/31 (29%) Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGE 195 GP GP G P G P E Sbjct: 1004 PAGPXGPX-------GPXGPXGPPS--GGYE 1025 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:1-199) Length = 199 Score = 29.7 bits (67), Expect = 1.5 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDID 247 L + ++ GLER+A LQ N Y++ Sbjct: 162 LKDIPLEITYGLERIAXYLQGVDNVYEVQ 190 >3cjh_A Mitochondrial import inner membrane translocase subunit TIM13; cyclic heterohexamer, chaperone, metal-binding, mitochondrion; 2.60A {Saccharomyces cerevisiae} (A:) Length = 64 Score = 29.3 bits (66), Expect = 1.8 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%) Query: 173 SEIFFDQGECIPGGLPGSSEEG-------ERYIEIWNLVFMQFEQQNKQER 216 SE F++ C+ P ++ +Y+ WN++ + + + Sbjct: 13 SENCFEK--CLTS--PYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59 >1haq_A Complement factor H; immunology, glycoprotein, repeat, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A (A:430-490) Length = 61 Score = 29.1 bits (65), Expect = 2.3 Identities = 8/27 (29%), Positives = 11/27 (40%) Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVE 503 C K ID+ NG S + E + Sbjct: 1 CSKSSIDIENGFISESQYTYALKEKAK 27 >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} (A:131-193) Length = 63 Score = 28.4 bits (64), Expect = 3.7 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 17/68 (25%) Query: 646 NLPVVTRIMNREDAIA-------SGAAALLGTKY--NDRVRVVS-VEYEDGGVHSSALCG 695 N V+ + ++ +A S ++L +D+ + EY D +C Sbjct: 1 NYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVD-------MCR 53 Query: 696 GTHVSSTG 703 G HV + Sbjct: 54 GPHVPNMR 61 >1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} (A:61-172) Length = 112 Score = 28.5 bits (64), Expect = 3.9 Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA 136 A+ ++W L + +D+RR+ +D EA Sbjct: 18 HALHVSWSNLQDQQSIDERRVTFLGFDAATEA 49 >3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} (A:) Length = 89 Score = 28.3 bits (63), Expect = 4.3 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 9/43 (20%) Query: 182 CI---PGGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQE 215 C+ + E+ E++++ V +F++QN Sbjct: 41 CVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAAL 83 >1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326) Length = 128 Score = 27.9 bits (62), Expect = 5.1 Identities = 6/36 (16%), Positives = 13/36 (36%) Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 H+++ + +P D + + L D V Sbjct: 77 HITEYNTSYSPINPVHDTALNAAYIARILSEGGDYV 112 >2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} (B:) Length = 90 Score = 27.5 bits (61), Expect = 7.1 Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 10/52 (19%) Query: 182 CIPGGLPG----SSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMS 223 C+P E +Y++I + + + Q+ + ++ Sbjct: 33 CVPPHYKEAELSKGESVCLDRCVSKYLDIHERXGKKLTELSXQDEELXKRVQ 84 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0532 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 6,786,040 Number of extensions: 323521 Number of successful extensions: 924 Number of sequences better than 10.0: 1 Number of HSP's gapped: 868 Number of HSP's successfully gapped: 44 Length of query: 898 Length of database: 4,956,049 Length adjustment: 96 Effective length of query: 802 Effective length of database: 1,710,769 Effective search space: 1372036738 Effective search space used: 1372036738 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.0 bits)