RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(898 letters)
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix
motif, amino acid binding, ligase; 2.08A {Aquifex
aeolicus} (A:1-237)
Length = 237
Score = 339 bits (871), Expect = 8e-94
Identities = 127/238 (53%), Positives = 169/238 (71%), Gaps = 8/238 (3%)
Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ QK
Sbjct: 8 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67
Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + +LY
Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 127
Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE G
Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 186
Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N+
Sbjct: 187 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 237
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
protein biosynthesis, nucleotide-binding, amino
acid-binding, acetylation; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A* (A:1-252)
Length = 252
Score = 333 bits (854), Expect = 7e-92
Identities = 143/250 (57%), Positives = 181/250 (72%), Gaps = 10/250 (4%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
+ + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T
Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCS 173
+ RL++TVY+ D+EA+++W+K G+ ++IIRI +DNFW M +TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182
Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DT MGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242
Query: 233 MATVLQEKTN 242
+A VLQ +
Sbjct: 243 IAAVLQHVNS 252
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266)
Length = 266
Score = 234 bits (598), Expect = 4e-62
Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 74/257 (28%)
Query: 7 IRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAVT 62
+R FL FF+ + H + ++P ++ + ++ F+ +G+ P +
Sbjct: 62 MREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLV 121
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKE 117
Q +R D+DNVG T RH T FEM+ + +F Y+ + ++LA++ TKE
Sbjct: 122 ISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKE 177
Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
+ + +N W+ G GP E+ +
Sbjct: 178 LXMXPEDIT-----------------------------FKENPWAG--GGNAGPAFEVLY 206
Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPKMSID 225
+E+ LVFMQ+ ++ + +D
Sbjct: 207 R------------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVD 248
Query: 226 TGMGLERMATVLQEKTN 242
TG GLER+ + Q
Sbjct: 249 TGYGLERLVWMSQGTPT 265
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:1-260)
Length = 260
Score = 223 bits (569), Expect = 9e-59
Identities = 53/248 (21%), Positives = 84/248 (33%), Gaps = 67/248 (27%)
Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
R +L FF++ GH + ++ + T + + F+ T G P +T Q
Sbjct: 66 REYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQP 125
Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLD 121
C+R +DLD+VGRT RH T FE + +F Y+K + +LL +
Sbjct: 126 CIR----LDDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNEL---- 177
Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
G+ + I + W+ G GPC E
Sbjct: 178 -----------------------GVKKE---DIVYKEEPWAGG--GNAGPCLEAIVG--- 206
Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-------PKMSIDTGMGLERMA 234
+E+ LVF E+ + + I +DTG GLER
Sbjct: 207 ---------------GLEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGLERFV 251
Query: 235 TVLQEKTN 242
+
Sbjct: 252 WASKGTPT 259
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:261-423)
Length = 163
Score = 187 bits (476), Expect = 6e-48
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 21/174 (12%)
Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253
E I + + F +++++ R I+ + S G+ + L
Sbjct: 6 PEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIX------------GELRGERLNQLR 53
Query: 254 QASEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
++ G+ E + + DH R F + DG++P+N G GY+ R +RR+
Sbjct: 54 KSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLARLXIRRS 113
Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
+ A L L L+ +G + + ++E L E ER+ T+
Sbjct: 114 LRLAEELELGLDL-YDLVEXHKKILGFEFDVPLS---TVQEILELEKERYRTTV 163
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:267-426)
Length = 160
Score = 167 bits (425), Expect = 4e-42
Identities = 31/155 (20%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 219 LPKMSIDTGMGLERMATVLQEKT-------NNYDIDLFKHLIQASEQVTGMKYEGNN--- 268
+ + + G+E++ + + + D+ ++L + + G+ E
Sbjct: 8 VVEP-LXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAI 66
Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
I DH ++ +F++ADG++P+N GY+ R ++R+++ + R LG PL ++
Sbjct: 67 RPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVPL-SEIV 125
Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
E+ +PE + + +I E + E++ + +T
Sbjct: 126 ALHIXELHKTFPEFXEMEDIILEMIELEEKXYAET 160
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
protein biosynthesis, nucleotide-binding, amino
acid-binding, acetylation; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A* (A:253-368)
Length = 116
Score = 153 bits (389), Expect = 6e-38
Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P+NE RGYVLR
Sbjct: 1 NYDIDLFRTLIQAVAKVTGATDLSN--KSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 58
Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
RI+RRA+ + +LG E L+ L MGSA +L + + +E+ L++E+E+F +
Sbjct: 59 RIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFAR 116
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix
motif, amino acid binding, ligase; 2.08A {Aquifex
aeolicus} (A:238-355)
Length = 118
Score = 149 bits (377), Expect = 2e-36
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query: 245 DIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
+ID+ LIQ E+V+G KY V RVI DHLR+ +F I+DG++P+NEGRGYV+R
Sbjct: 1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIR 60
Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
RI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF K
Sbjct: 61 RILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 118
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:603-752)
Length = 150
Score = 128 bits (323), Expect = 3e-30
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
+ R Q +H+ TH+L AL +LG HV Q GS +T D R D++H I+ EL IE
Sbjct: 1 WXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIE 60
Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
N I+ ++ V + R A L + V ED GG
Sbjct: 61 MLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIED---WDVQAXGG 117
Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
TH+ STG + + I+ I+ G+ RI G+
Sbjct: 118 THLPSTGLVGPIXILRTERIQDGVERIIFACGE 150
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:590-739)
Length = 150
Score = 126 bits (317), Expect = 1e-29
Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
R + +HSATH+L ++L +LG+HV Q G+ R DVTH + + E+K IE
Sbjct: 4 RWRHXRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLA 63
Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
N I N P+ +R +A L G R V G A CGGTH
Sbjct: 64 NREILANKPIKWEWXDRIEAERKFGFRLYQGGVPPGRKIRVVQ----VGDDVQA-CGGTH 118
Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
STGEI L I+ SI+ G+ R E G+
Sbjct: 119 CRSTGEIGXLKILKVESIQDGVIRFEFAAGE 149
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA,
aminoacylation, translational regulation, protein/RNA,
ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} (A:64-224)
Length = 161
Score = 122 bits (308), Expect = 1e-28
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
I HS HLL HA+ L H + +G +DV + +T +++++E +
Sbjct: 3 EGLEIIRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRM 61
Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGG 696
+++ +N V+ + ++ +A + A K + ++ + + G +C G
Sbjct: 62 HELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRG 121
Query: 697 THVSSTGEIMLLYIVSESSI-------RAGIRRIEAI 726
HV + ++ + ++RI
Sbjct: 122 PHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGT 158
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U
QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli}
(A:129-271,A:422-557)
Length = 279
Score = 121 bits (303), Expect = 5e-28
Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 32/270 (11%)
Query: 5 SSIRTTFLEFFQKNGHELL--PSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
+ I + F +G + P + S + K Q +++ +
Sbjct: 14 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLL 73
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG-NFSFGGY-----FKERAIQLAWDLLTK 116
+ R + F + SF E ++ W +
Sbjct: 74 MMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKG 133
Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKK-ISGLSADKIIRIT----------TNDNFWSMAE 165
D + + + LW D +T A
Sbjct: 134 VDLGDFPVM------TESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAA 187
Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------ 219
+ G + GG + ++ ++ + E+Q ++ F+L
Sbjct: 188 PENAVANAYDMVINGYEVGGGSVRIHNG-DMQQTVFGILGINEEEQREKFGFLLDALKYG 246
Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
GL+R+ +L N D+ F
Sbjct: 247 TPPHAGLAFGLDRLTMLLTGTDNIRDVIAF 276
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken
structural genomics/proteomics initiative RSGI,
structural genomics; 1.45A {Pyrococcus horikoshii} (A:)
Length = 157
Score = 120 bits (303), Expect = 5e-28
Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 5/155 (3%)
Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
HSA H++ A+ +LGS + + + V + + E++ IE
Sbjct: 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERL 61
Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
N+ + +N P+ + RE+A + + VR++ V + + C
Sbjct: 62 ANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKE 119
Query: 698 HVSSTGEIMLLYIVS-ESSIRAGIRRIEAITGQRA 731
H +TGEI + I G+ I +
Sbjct: 120 HTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELE 154
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA
synthase, protein structure initiative; 2.00A
{Clostridium perfringens atcc 13124} (A:89-241)
Length = 153
Score = 117 bits (293), Expect = 8e-27
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
+ R H HLL + G++ G + + D+ + ++ E
Sbjct: 1 ERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIVG--FLDEKTIREAEK 56
Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
N +I +NL V + ++++ L + E G+ +A C G
Sbjct: 57 EANRLIFENLEVKSYAPSKKELKKVKTRRALPKTDEEIRI-----VEIVGLDLNA-CCGV 110
Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
H +T ++ ++ I RIE + G RA S
Sbjct: 111 HPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSEGHHHHH 152
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii}
(A:89-216)
Length = 128
Score = 110 bits (275), Expect = 1e-24
Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 26/151 (17%)
Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSI 635
+ R +L H+ HLL H L+ +LG Q GS ++ + R+D+ + + + + I
Sbjct: 1 WDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKYKEQI 59
Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
N + + V CG
Sbjct: 60 ISLFNKYVDEGGEVKIWWEGDRRYT----------------------QIRD--FEVIPCG 95
Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
GTHV EI + + SSI G +R+E
Sbjct: 96 GTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 126
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural
genomics, PSI, protein structure initiative; 1.65A
{Pyrococcus furiosus} (A:)
Length = 294
Score = 108 bits (270), Expect = 2e-24
Identities = 42/274 (15%), Positives = 75/274 (27%), Gaps = 21/274 (7%)
Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
+ I +FF K G + L + P DP GM P + G + + ++
Sbjct: 19 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMIL 78
Query: 64 VQKCVRAGG---------KHNDLDNVGRTNRHHTFFEMLG----------NFSFGGYFKE 104
++ A G RH F L
Sbjct: 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVY 138
Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
+ A + +EF +R + EE K + I + +
Sbjct: 139 GLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREV 198
Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
+ + + GE GG E+ I L F + + K S
Sbjct: 199 DGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 258
Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
G+G+ER+ + + ++ F +
Sbjct: 259 AGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix
motif, amino acid binding, ligase; 2.08A {Aquifex
aeolicus} (A:356-465)
Length = 110
Score = 100 bits (250), Expect = 9e-22
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
TL G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ F
Sbjct: 1 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 59
Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
LEEQR RAR H + ++ LKE + F+G L
Sbjct: 60 QCELEEQRERARKHFKVEA-KKVKPVYSHLKELGKTSAFVGAAALEHH 106
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
nucleotide-binding; 1.85A {Aquifex aeolicus} (A:)
Length = 111
Score = 97.1 bits (242), Expect = 9e-21
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
+ D + EV+ +EL+++ D L+++ + ++ + +K + +I V++++ D+
Sbjct: 5 NVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGDK-INFVIGVSKEISDK 63
Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
NA ++ R KVL GGGGG R +AQ GG +K +A+ + L
Sbjct: 64 VNAKEVIREVGKVLKGGGGG-RADLAQGGGKAPDKFPEAVKLLKEILS 110
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
protein biosynthesis, nucleotide-binding, amino
acid-binding, acetylation; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A* (A:369-441)
Length = 73
Score = 86.2 bits (214), Expect = 1e-17
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
TL+RGL LLD L+ L D + +G+ AF+LYDT+G P+D+ D+ R + +D F
Sbjct: 1 TLERGLALLDEELAKLSGDTL-DGETAFRLYDTYGFPVDLTADVCRERNI-KVDEAGFEA 58
Query: 421 ALEEQRSRARAHS 433
A+EEQR RAR S
Sbjct: 59 AMEEQRRRAREAS 71
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus} (A:27-171)
Length = 145
Score = 84.5 bits (209), Expect = 6e-17
Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 755 NVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELK 810
+ VE +EE++ + + K + D+ + + + + + D + L+
Sbjct: 3 KLPKTVERFFEEWKDQRKEIERLKSVIADLWADILXERAEEFDSXKVVAEVVDADXQALQ 62
Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
+ + L +K + + E K V+ + +A +L R +V G GGG
Sbjct: 63 KLAERLAEKG---AVGCLXAKGEGKVFVVTFSGQKY----DARELLREIGRVAKGSGGG- 114
Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
R +AQ ++ + + FL +
Sbjct: 115 RKDVAQGAVQQLLDREEXLDVIFRFLSE 142
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET:
ATP; 2.80A {Staphylococcus aureus} (A:66-134,A:188-224)
Length = 106
Score = 83.9 bits (208), Expect = 7e-17
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
+ HS HL+ HA+ + G +V + G +D + I+S + + IE +
Sbjct: 3 EALEVLRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTM 61
Query: 640 NDIIAQNL 647
I+ +N+
Sbjct: 62 KQIVNENM 69
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:504-602)
Length = 99
Score = 83.3 bits (206), Expect = 1e-16
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 489 SSIVKAIVQQGEIVEEA----VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
+ + + + E + V+ D T FY E GGQ DTG I +G + +T
Sbjct: 10 LPDTRRLYYEDPFMXEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVT 69
Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
+VQ G + H + + G M + ID
Sbjct: 70 NVQ--XVGXVIIHXVEDPGAFXEGMIVHGXID 99
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:495-589)
Length = 95
Score = 79.1 bits (195), Expect = 2e-15
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 36/130 (27%)
Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
+L+ +Y AT+ + YD E E +
Sbjct: 2 TLQNEYPATEKLYYDDP---------------------------------TLLEFEAEVI 28
Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
+ V+ +++ FY E+GGQ D G I +G + ++ DV + G+ +H +V+
Sbjct: 29 GVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEAD-GVVLH--VVKGAKPE 85
Query: 567 TEMSLVLTID 576
+ ID
Sbjct: 86 VGTKVKGVID 95
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:427-503)
Length = 77
Score = 76.6 bits (189), Expect = 1e-14
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII-SF 418
L RG L+ ++ L K + + + Y++HGL +I+ +I G+ ++I +F
Sbjct: 1 LRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVK-VNIPDNF 59
Query: 419 NQALEEQRSRARAHS 433
+ ++ R +
Sbjct: 60 YSMVAKEAERTKEEK 74
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} (A:1-88)
Length = 88
Score = 72.1 bits (177), Expect = 3e-13
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
E + + ++ DQT FY GGQ D G I +++ DV K EG V H +
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGT-IN---GVEVLDVYKDEEG-NVWHVV 71
Query: 560 VERGILRTEMSLVLTID 576
E + + L ID
Sbjct: 72 KEPEKFKVGDEVELKID 88
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:424-494)
Length = 71
Score = 70.0 bits (172), Expect = 1e-12
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS-FNQAL 422
+G L++ ++ K L D +LYD+HG+P+++ I +G ++ L
Sbjct: 2 KGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKGAE-VEXPKDIYAEL 57
Query: 423 EEQRSRARAHS 433
++ S+A
Sbjct: 58 AKRHSKAEKVQ 68
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA
synthase, protein structure initiative; 2.00A
{Clostridium perfringens atcc 13124} (A:1-88)
Length = 88
Score = 66.8 bits (163), Expect = 1e-11
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
+GEI+E K V+ DQT F+ GGQ+GD G G +++ DV ++ G H
Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEE-GKVYH- 70
Query: 558 AIVERGILRTEMSLVLTIDY 577
V + +L +D+
Sbjct: 71 --VLEKEPKKLKNLQCELDW 88
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli}
(A:64-130,A:194-224)
Length = 98
Score = 35.4 bits (82), Expect = 0.032
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDNVN 640
I HS HLL HA+ + + + I P +G +DV + +T +++++E ++
Sbjct: 8 IRHSCAHLLGHAIKQLWPHTKM-----AIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMH 62
Query: 641 DIIAQNLPVVTRI 653
++ ++ + +
Sbjct: 63 ELAEKHHFKLMKT 75
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix,
supermolecular, packing structure; 5.16A {Rattus
norvegicus} (B:)
Length = 1026
Score = 32.4 bits (71), Expect = 0.27
Identities = 9/31 (29%), Positives = 9/31 (29%), Gaps = 9/31 (29%)
Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGE 195
GP GP G P G P E
Sbjct: 1004 PAGPXGPX-------GPXGPXGPPS--GGYE 1025
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics,
TM0216, JCSG, PSI, protein structure initiative; 1.95A
{Thermotoga maritima} (A:1-199)
Length = 199
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDID 247
L + ++ GLER+A LQ N Y++
Sbjct: 162 LKDIPLEITYGLERIAXYLQGVDNVYEVQ 190
>3cjh_A Mitochondrial import inner membrane translocase subunit
TIM13; cyclic heterohexamer, chaperone, metal-binding,
mitochondrion; 2.60A {Saccharomyces cerevisiae} (A:)
Length = 64
Score = 29.3 bits (66), Expect = 1.8
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 173 SEIFFDQGECIPGGLPGSSEEG-------ERYIEIWNLVFMQFEQQNKQER 216
SE F++ C+ P ++ +Y+ WN++ + + +
Sbjct: 13 SENCFEK--CLTS--PYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59
>1haq_A Complement factor H; immunology, glycoprotein, repeat,
complement alternate pathway, SCR, CCP; NMR {Homo
sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A
2kms_A 1hfi_A 1hcc_A (A:430-490)
Length = 61
Score = 29.1 bits (65), Expect = 2.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVE 503
C K ID+ NG S + E +
Sbjct: 1 CSKSSIDIENGFISESQYTYALKEKAK 27
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli}
(A:131-193)
Length = 63
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 646 NLPVVTRIMNREDAIA-------SGAAALLGTKY--NDRVRVVS-VEYEDGGVHSSALCG 695
N V+ + ++ +A S ++L +D+ + EY D +C
Sbjct: 1 NYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVD-------MCR 53
Query: 696 GTHVSSTG 703
G HV +
Sbjct: 54 GPHVPNMR 61
>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS,
regulatory protein, protein structure initiative, PSI;
2.00A {Escherichia coli} (A:61-172)
Length = 112
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA 136
A+ ++W L + +D+RR+ +D EA
Sbjct: 18 HALHVSWSNLQDQQSIDERRVTFLGFDAATEA 49
>3dxr_A Mitochondrial import inner membrane translocase subunit
TIM9; alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
(A:)
Length = 89
Score = 28.3 bits (63), Expect = 4.3
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 182 CI---PGGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQE 215
C+ + E+ E++++ V +F++QN
Sbjct: 41 CVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAAL 83
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A
{Geobacillus stearothermophilus} (A:199-326)
Length = 128
Score = 27.9 bits (62), Expect = 5.1
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
H+++ + +P D + + L D V
Sbjct: 77 HITEYNTSYSPINPVHDTALNAAYIARILSEGGDYV 112
>2bsk_B Mitochondrial import inner membrane translocase subunit
TIM10; protein transport, mitochondrial protein import,
TIM complex; 3.3A {Homo sapiens} (B:)
Length = 90
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 182 CIPGGLPG----SSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMS 223
C+P E +Y++I + + + Q+ + ++
Sbjct: 33 CVPPHYKEAELSKGESVCLDRCVSKYLDIHERXGKKLTELSXQDEELXKRVQ 84
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 6,786,040
Number of extensions: 323521
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 44
Length of query: 898
Length of database: 4,956,049
Length adjustment: 96
Effective length of query: 802
Effective length of database: 1,710,769
Effective search space: 1372036738
Effective search space used: 1372036738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)