RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(898 letters)
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 617 bits (1592), Expect = e-177
Identities = 174/795 (21%), Positives = 302/795 (37%), Gaps = 168/795 (21%)
Query: 3 NVSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVY 58
+ +R FL FF+ + H + ++P ++ + ++ F+ + +G+ P
Sbjct: 58 TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117
Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDL 113
+ Q +R D+DNVG T RH T FEM+ + +F Y+ + ++LA++
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEF 173
Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
TKE + + K +N W+ G GP
Sbjct: 174 FTKELXMXPEDI--------------TFK---------------ENPWAGG--GNAGPAF 202
Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPK 221
E+ + +E+ LVFMQ+ ++ +
Sbjct: 203 EVLYR------------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMET 244
Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLF-------------------------------- 249
+DTG GLER+ + Q YD L
Sbjct: 245 XVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDI 304
Query: 250 ------KHLIQASEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
++L + + G+ E I DH ++ +F++ADG++P+N G
Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAG 364
Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
Y+ R ++R+++ + R LG PL ++ E+ +PE + + +I E + E++ +
Sbjct: 365 YLARLLIRKSIRHLRELGLEVPL-SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXY 423
Query: 359 GKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
+TL RG L+ + + + + Y++HGL +I+ +I G+
Sbjct: 424 AETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPD 483
Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
+F + ++ R + E + F L + T+ + Y+
Sbjct: 484 NFYSMVAKEAERTKEEK------GEELVDFELLKDLPDTRRLYYE--------------- 522
Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
E + V+ D T FY E GGQ DTG I
Sbjct: 523 ------------------DPFMXEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIV 564
Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
+G + +T+VQ G + H + + G M + ID+ R Q +H+ TH+L A
Sbjct: 565 NGREVXVTNVQXV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGA 622
Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
L +LG HV Q GS +T D R D++H I+ EL IE N I+ ++ V + R
Sbjct: 623 LVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPR 682
Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
A L G +RVV + CGGTH+ STG + + I+
Sbjct: 683 TTAEQXYGFRLYQGGVVPGREIRVVXI----EDW-DVQACGGTHLPSTGLVGPIXILRTE 737
Query: 715 SIRAGIRRIEAITGQ 729
I+ G+ RI G+
Sbjct: 738 RIQDGVERIIFACGE 752
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 570 bits (1470), Expect = e-163
Identities = 177/785 (22%), Positives = 305/785 (38%), Gaps = 165/785 (21%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
+ +R +L FF++ GH + ++ + T + + F+ T G P +
Sbjct: 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120
Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
T Q C+R +DLD+VGRT RH T FEM+ + +F KE + W T +
Sbjct: 121 TISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKE----IYWKNETVAY--- 169
Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
+L ++ G+ + I+ + W+ G GPC E
Sbjct: 170 --------------CTELLNEL-GVKKEDIVYK---EEPWAGG--GNAGPCLEAIVG--- 206
Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFI-LPKMSIDTGMGLERMA 234
+E+ LVFM E+ + K R+ + +DTG GLER
Sbjct: 207 ---------------GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFV 251
Query: 235 TVLQEKTNNYD---------------------IDLFKHLIQASEQVTGMKYEGNN----- 268
+ YD + + ++ S ++ G+ E
Sbjct: 252 WASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQ 311
Query: 269 ----------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
+ + DH R F++ DG++P+N G GY+ R ++R
Sbjct: 312 LRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIR 371
Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
R++ A L + L+ +G + + ++E L E ER+ T+ +G
Sbjct: 372 RSLRLAEELEL-GLDLYDLVEMHKKILGFEFDVPLS---TVQEILELEKERYRTTVSKGT 427
Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
L++ + + + L D +LYD+HG+P+++ I +G L ++
Sbjct: 428 RLVE---RLVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRH 484
Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
S+A ++ +L+ +Y AT+ + YD ++ + +V+
Sbjct: 485 SKAEK---------VQEKKITLQNEYPATEKLYYD---DPTLLEFEAEVIG--------- 523
Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
+ V+ +++ FY E+GGQ D G I +G + ++ DV
Sbjct: 524 ---------------------VEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDV 562
Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
+ + + + ID R + +HSATH+L ++L +LG+HV
Sbjct: 563 LEADGVVLHVV---KGAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVW 619
Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
Q G+ R DVTH + + E+K IE N I N P+ M+R +A
Sbjct: 620 QAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFR 679
Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
L G ++RVV V CGGTH STGEI +L I+ SI+ G+ R E
Sbjct: 680 LYQGGVPPGRKIRVVQVGD------DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFE 733
Query: 725 AITGQ 729
G+
Sbjct: 734 FAAGE 738
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, nucleotide-binding, amino acid-binding,
acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB:
3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 556 bits (1434), Expect = e-159
Identities = 236/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
+ + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T
Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCS 173
+ RL++TVY+ D+EA+++W+K G+ ++IIRI +DNFW M +TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182
Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DT MGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242
Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
+A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P
Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSN--KSLRVIADHIRSCAFLIADGVMP 300
Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360
Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
+E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R +
Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418
Query: 413 IDIISFNQALEEQRSRARAHS 433
+D F A+EEQR RAR S
Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 491 bits (1265), Expect = e-139
Identities = 213/468 (45%), Positives = 300/468 (64%), Gaps = 15/468 (3%)
Query: 1 MS-NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
MS + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+
Sbjct: 1 MSLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK 60
Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
T+ QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+
Sbjct: 61 RATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLK 120
Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
L + +LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+
Sbjct: 121 LPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDR 180
Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
GE G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ
Sbjct: 181 GEEYEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQG 232
Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
K +N++ID+ LIQ E+V+G KY V RVI DHLR+ +F I+DG++P+NEGR
Sbjct: 233 KNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGR 292
Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
GYV+RRI+RRAM + LG P + + + M YPEL ++ ++ ++ E++R
Sbjct: 293 GYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 352
Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
F KTL G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+
Sbjct: 353 FIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDL 411
Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
F LEEQR RAR H + + ++ LKE + F+G L
Sbjct: 412 EGFQCELEEQRERARKHFKV-EAKKVKPVYSHLKELGKTSAFVGAAAL 458
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens atcc 13124}
Length = 241
Score = 115 bits (288), Expect = 4e-26
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 19/234 (8%)
Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
+GEI+E K V+ DQT F+ GGQ+GD G G + DV ++ EG H
Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDGIK----VLDVYEE-EGKVYHV 71
Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
E +L +D++ R H HLL + G++ + +
Sbjct: 72 LEKEPKK---LKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCG--FHLGKEIS 126
Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
D + ++ E N +I +NL V + ++++ L +
Sbjct: 127 TVD--IVGFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKTDEE--- 181
Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
+ + C G H +T ++ ++ I RIE + G RA
Sbjct: 182 ---IRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRA 231
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 111 bits (279), Expect = 5e-25
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 31/230 (13%)
Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
E + + ++ DQT FY GGQ D G G ++ DV K EG H
Sbjct: 14 YLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGV----EVLDVYKDEEGNVWH 69
Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPD 615
+ E + + L ID+ R +L H+ HLL H L+ +LG Q GS ++ +
Sbjct: 70 V-VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVE 128
Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
R+D+ + + + + I N + + V + +
Sbjct: 129 KGRYDIAYPENLNK-YKEQIISLFNKYVDEGGEVKIWWEGD--------------RRYTQ 173
Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
+R V CGGTHV EI + + SSI G +R+E
Sbjct: 174 IRDFEVI----------PCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 96.3 bits (239), Expect = 3e-20
Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 12/175 (6%)
Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVED 785
G+ A + + L+ +S L+V + VE +EE++ ++ K + D
Sbjct: 2 GEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61
Query: 786 LSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
+ + + + M + V D + L+ + + L +K G +M G K V
Sbjct: 62 ILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEKGAVGCLMAKGEGKVF-------VV 114
Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
+++A +L R +V G GGG R +AQ ++ + + FL +
Sbjct: 115 TFSGQKYDARELLREIGRVAKGSGGG-RKDVAQGAVQQLLDREEMLDVIFRFLSE 168
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A
Length = 157
Score = 92.2 bits (228), Expect = 5e-19
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 586 NHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
HSA H++ A+ +LGS S + + V + + E++ IE N+ +
Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67
Query: 645 QNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
+N P+ + RE+A G + VR++ V + + C H +TG
Sbjct: 68 ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKEHTKTTG 125
Query: 704 EIMLLYIVS-ESSIRAGIRRIE 724
EI + I G+ I
Sbjct: 126 EIGPIKIRKVRFRKSKGLLEIH 147
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
nucleotide-binding; 1.85A {Aquifex aeolicus}
Length = 111
Score = 80.3 bits (198), Expect = 2e-15
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
+ D + EV+ +EL+++ D L+++ + ++ + K K + +I V++++ D+
Sbjct: 5 NVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEISDK 63
Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
NA ++ R KVL R +AQ GG +K +A+ + L
Sbjct: 64 VNAKEVIREVGKVL-KXXXXXRADLAQGGGKAPDKFPEAVKLLKEIL 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 66.5 bits (162), Expect = 2e-11
Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 79/262 (30%)
Query: 1 MSNVSSIRTTFLEFF--QKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKNIFTGQ 53
M ++S++ ++ + + N H LP+ SL+ N N + +G
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH--LPAGKQVEISLV--NGAK----N-----L--VVSGP 382
Query: 54 EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNR----HHTFFEMLGNF-SFGGYFKERAIQ 108
+ +Y T++K +A D + + R + F + F S +
Sbjct: 383 PQSLYGLNLTLRK-AKAPSG-LDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDL 438
Query: 109 LAWDLLTKEFDLDQRRLYITVYD----EDEEAFKLWKKISGLSADKIIR-ITTNDNFWSM 163
+ DL+ + + + I VYD D L + +SG +++I+ I W
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSD-----L-RVLSGSISERIVDCIIRLPVKWET 492
Query: 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
T + I D G PGG G + L +NK
Sbjct: 493 T-TQF--KATHI-LDFG---PGGASG----------LGVLT-----HRNKD--------- 521
Query: 224 IDTGMGLER--MATVLQEKTNN 243
G G+ R +A L ++
Sbjct: 522 ---GTGV-RVIVAGTLDINPDD 539
Score = 56.1 bits (135), Expect = 3e-08
Identities = 97/549 (17%), Positives = 150/549 (27%), Gaps = 242/549 (44%)
Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
++ +L + H L + L+ ND TL+ T K + K A
Sbjct: 88 LTEFENCYL--EGNDIHALA--AKLLQENDTTLVKT-------KELI----KNYITA--- 129
Query: 64 VQKCVRAGGKHNDLDNVGRTNRH-HTFFEML--GNFS----FGG------YFKE-RAIQ- 108
+ A + F + GN FGG YF+E R +
Sbjct: 130 ---RIMAKRP--------FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 109 ----LAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SM 163
L DL+ L + +A K++ + GL + I+ W
Sbjct: 179 TYHVLVGDLIKFS----AETLS-ELIRTTLDAEKVFTQ--GL--N-ILE-------WLEN 221
Query: 164 AETGP------CGPCSE--IFFDQ-----------GECIPG-------GLPGSSEEG--- 194
P P S I Q G PG G G S+ G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQ-GLVT 279
Query: 195 ----------ERY-------IEIWNLVFMQFE-QQNKQERFILPKM---SIDTG------ 227
E + I + L F+ + + P + S++
Sbjct: 280 AVAIAETDSWESFFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 228 M----GLERMATVLQE---KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDH 278
M L + +Q+ KTN HL A +QV I VN
Sbjct: 338 MLSISNLTQ--EQVQDYVNKTN-------SHL-PAGKQVE--------ISLVNGA----- 374
Query: 279 LRSSSFLIADGILPANEGRGYV--LRRIM--------------RRAMCYARLLGYTEPLM 322
+ +++ G P G LR+ R+ R L P
Sbjct: 375 ---KNLVVS-G--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
H S L+ A LI + L + V +
Sbjct: 428 -H----------SHL--LVPASDLINKDLVKNN-----------VSFNA----------- 452
Query: 383 NGDVAFKLYDTH-GLPLDIMQDILCARGLAG------IDIIS-----FNQALEEQRSRAR 430
D+ +YDT G D+ R L+G +D I + + + +
Sbjct: 453 -KDIQIPVYDTFDG------SDL---RVLSGSISERIVDCIIRLPVKWETTTQFKAT--- 499
Query: 431 AHSLGLGSG 439
H L G G
Sbjct: 500 -HILDFGPG 507
Score = 55.3 bits (133), Expect = 6e-08
Identities = 121/746 (16%), Positives = 206/746 (27%), Gaps = 312/746 (41%)
Query: 1 MSNVS---------SIRTTFLEFFQKNGHELLPSSSLIPCNDPTL--MFTNSGMVPFKNI 49
M S S+ L +P++S + L F P +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL----------VPTASFFIAS--QLQEQFNKILPEPTEG- 47
Query: 50 FTGQEKP------VYQAVTTV--QKCVRAGGKHND-LDNVGRTNRHHTFFE---MLGNFS 97
F ++P V + + V G+ + L+ T FE + GN
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC------LTEFENCYLEGN-- 99
Query: 98 FGGYFKERAIQ-LAWDLLT-KEFDLDQRRLYITVYDEDEEAFK----LWKKISGLSADKI 151
I LA LL + L + + I Y + S +
Sbjct: 100 --------DIHALAAKLLQENDTTLVKTKELIKNY------ITARIMAKRPFDKKSNSAL 145
Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYI----EIWN----L 203
R N +A IF QG + Y +++ L
Sbjct: 146 FRAVGEGNAQLVA----------IFGGQGN------------TDDYFEELRDLYQTYHVL 183
Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
V I + A L E LI+ + +
Sbjct: 184 V----------GDLI------------KFSAETLSE------------LIRTTLDAEKVF 209
Query: 264 YEGNNIV------NHRVIVDHLRSS--SF-LIADGILPANEGRGYVLRRIMRRAMC-YA- 312
+G NI+ ++ D+L S S LI G++ + Y
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVI----------------QLAHYVV 251
Query: 313 --RLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRSED--ERFGKTLDRGLV 367
+LLG+T + L T G S Q L+ + D E F ++ + +
Sbjct: 252 TAKLLGFTPGELRSYLKGA-T--GHS------QG-LVTAVAIAETDSWESFFVSVRKAIT 301
Query: 368 LL--DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD-----------ILCARGL---- 410
+L GV + Y LP I++D +L L
Sbjct: 302 VLFFIGVRCYEA-------------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 411 --AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI---------G 459
++ N L + ++ SL GA + G
Sbjct: 349 VQDYVN--KTNSHLPAGK----------------QVEISLVN--GAKNLVVSGPPQSLYG 388
Query: 460 YDL-LRGSK-----------FMKEDRKVLCQKP--PIDLTNGV---SSIVKAIVQQGEIV 502
+L LR +K F + RK+ P+ S ++ +++
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRFLPV----ASPFHSHLLVPAS---DLI 439
Query: 503 EEAVSGQKVEVVFDQ--TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
+ + V P Y DT DG +D++ + I IV
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVY--------DTF----DG-----SDLRVLSGSIS--ERIV 480
Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH---ALSTILGSHVSQN--GSCITPD 615
+ + L + ++ + ATH+L S + G +N G+
Sbjct: 481 D-------CIIRLPVKWET----TTQFKATHILDFGPGGASGL-GVLTHRNKDGT----- 523
Query: 616 GLRFDVTHSKPITSAELKSIEDNVND 641
G+R I + L N +D
Sbjct: 524 GVRV-------IVAGTLDI---NPDD 539
Score = 54.2 bits (130), Expect = 1e-07
Identities = 63/357 (17%), Positives = 119/357 (33%), Gaps = 109/357 (30%)
Query: 581 RQLSINH-SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
R L+++H S H+L + T SQ L+ P + + ++
Sbjct: 7 RPLTLSHGSLEHVLL--VPTASFFIASQ---------LQEQFNKILPEPTEGFAADDE-- 53
Query: 640 NDIIAQNLPVVTR----IMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GG--VHS 690
+V + + + + G ++ + + E+E+ G +H+
Sbjct: 54 ---PTTPAELVGKFLGYVSSLVEPSKVGQ-------FDQVLNLCLTEFENCYLEGNDIHA 103
Query: 691 --SALCG--GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--GQDEKLKS 744
+ L T + T E++ YI ++ R + + S L + +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKK----SNSALFRAVGEGNAQL 156
Query: 745 LASFLKVSQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
+A F QGN EE +++ Y L V DL A+ +S +I
Sbjct: 157 VAIF--GGQGNTDDYFEELRDLYQTYHVL------------VGDL-IKFSAET--LSELI 199
Query: 802 SEVD------SKELKSVMDALQKKIQS-GIIMLVGISKEKKASV---LIVVTEDLLDRFN 851
++ L +++ L+ + L+ + LI V
Sbjct: 200 RTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLS------IPISCPLIGV--------- 243
Query: 852 AVDLAR--LSAKVLGGGGGGGRPHMAQSGGPNGNKADQ------AIAGV---ASFLK 897
+ LA ++AK+LG G R ++ G G+ Q AIA SF
Sbjct: 244 -IQLAHYVVTAKLLGFTPGELRSYLK---GATGHS--QGLVTAVAIAETDSWESFFV 294
Score = 40.7 bits (95), Expect = 0.002
Identities = 72/327 (22%), Positives = 115/327 (35%), Gaps = 98/327 (29%)
Query: 127 ITVYDEDEEAFKLW-------KKISGLSADKIIRITTNDNFWSMAETGPCGPCS-EIFFD 178
+ +Y + A +W K G S I+ I N+ P + I F
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFS---ILDIVINN------------PVNLTIHF- 1676
Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
GG E+G+R E N M FE +D + E++ +
Sbjct: 1677 ------GG-----EKGKRIRE--NYSAMIFE------------TIVDGKLKTEKIFKEIN 1711
Query: 239 EKTNNYDIDLFKHLIQASE----QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
E + +Y K L+ A++ +T M+ + + L+S + AD +
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLME---------KAAFEDLKSKGLIPADATFAGH 1762
Query: 295 EGRGYVLRRIMRRAMCYARLL------GYTEPLMMHLLPALCTEMG-SAY------PELI 341
Y + M L+ G T M +P E+G S Y P +
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMT---MQVAVPR--DELGRSNYGMIAINPGRV 1817
Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG--LPLD 399
A +E L+ ER GK G ++ EI+N +V + Y G LD
Sbjct: 1818 AASF-SQEALQYVVERVGKR--TGWLV-----------EIVNYNVENQQYVAAGDLRALD 1863
Query: 400 IMQDILCARGLAGIDIISFNQ--ALEE 424
+ ++L L IDII + +LEE
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 56.2 bits (135), Expect = 3e-08
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
+ HS HL+ HA+ + G+ G I G +D + I+S + + IE + I+
Sbjct: 73 LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131
Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
+N+ + ++++R++A +Y + E E+ ++S LC G HV
Sbjct: 132 ENMKIERKVVSRDEAK----ELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187
Query: 701 STGEIMLLYIVSESS 715
ST +I ++S +
Sbjct: 188 STAKIKEFKLLSTAG 202
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA,
aminoacylation, translational regulation, protein/RNA,
ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 46.6 bits (110), Expect = 2e-05
Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDNVN 640
I HS HLL HA+ + + + I P +G +DV + +T +++++E ++
Sbjct: 71 IRHSCAHLLGHAIKQLWPHTKM-----AIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMH 125
Query: 641 DIIAQNLPVVTRIMNREDAIA------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
++ +N V+ + ++ +A + + + + + V +C
Sbjct: 126 ELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV---DMC 182
Query: 695 GGTHVSSTGEIM 706
G HV +
Sbjct: 183 RGPHVPNMRFCH 194
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 37.8 bits (87), Expect = 0.012
Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 9/174 (5%)
Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVS 606
K V+ +V+ L + + I ++ L I HS HLL HA+ +
Sbjct: 33 KACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKM 92
Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
G + +G +DV + +T +++++E ++++ +N V+ + ++ +A + A
Sbjct: 93 AIG-PVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANR 151
Query: 667 LLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
G Y + ++ ++D +C G HV + ++ +
Sbjct: 152 --GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAG 203
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.8 bits (71), Expect = 0.64
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 22/73 (30%)
Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL----LRGSKFMKEDR----- 473
EEQR R + L S E+ W +EK A + DL R S+ +++++
Sbjct: 92 EEQRKRLQ--ELDAASKVMEQEW---REK--AKK----DLEEWNQRQSEQVEKNKINNRI 140
Query: 474 --KVLCQKPPIDL 484
K Q+P D+
Sbjct: 141 ADKAFYQQPDADI 153
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.7 bits (71), Expect = 0.68
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 450 EKYGATQF----IGYDLLRGSKFMKEDRKVLCQKPPI--DLTNGV----------SSIVK 493
EK G F + ++LL + + LCQK P+ DL G+ + + K
Sbjct: 690 EKMGVRTFSQKEMAFNLL---GLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRK 746
Query: 494 AIVQQGEI-----VEEA-----VSGQKVEVVFDQTPFYAEAGGQL 528
+V+ E+ +E A V+G + + Q A QL
Sbjct: 747 ELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQL 791
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 31.3 bits (70), Expect = 1.1
Identities = 54/351 (15%), Positives = 110/351 (31%), Gaps = 32/351 (9%)
Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
L L S E G + VLLD L KD +V LP++I +
Sbjct: 906 HTLDPSLLESGSEILGDLKLQ--VLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRI 963
Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
I A+ ID + + +L + G E I + ++ +
Sbjct: 964 IQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLR 1023
Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
L ++ + ++ ++ Q L+N + ++++V GE+V ++ Q + Q
Sbjct: 1024 SRL-ATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGV-LAAQSIGEPATQMTL 1081
Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
G + G+ V + + +++ L +
Sbjct: 1082 NTFH--FAGVASKKVTSGVP------------RLKEILNVAKNMKTPSLTVYLEPGHAAD 1127
Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
++ A + T L S + PD + + I +++
Sbjct: 1128 QE-----QAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAE 1182
Query: 641 DIIAQNLPVVTRI------MNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
Q P + R+ MN +D + + + + V+ E D
Sbjct: 1183 QSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDND 1233
>1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} SCOP:
b.34.3.1 c.37.1.9 PDB: 1br1_A* 1br4_A*
Length = 791
Score = 29.7 bits (66), Expect = 2.6
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 34/189 (17%)
Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
G I FD I G IE + L + +Q K ER + G
Sbjct: 247 FGKFIRINFDVTGYIVGA----------NIETYLLEKSRAIRQAKDERTFHIFYYLIAGA 296
Query: 229 GLERMATVLQEKTNNY--------------DIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274
+ +L E NNY D ++F+ ++A + + E +I+
Sbjct: 297 SEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVS 356
Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMR----------RAMCYARLLGYTEPLMMH 324
V L + F A+ +++ R++ R+ + +
Sbjct: 357 SVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKA 416
Query: 325 LLPALCTEM 333
Sbjct: 417 QTKEQADFA 425
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
RNA modification, thump domain, lyase; HET: EPE; 2.0A
{Homo sapiens}
Length = 530
Score = 28.8 bits (64), Expect = 5.8
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
+ +K I +++ + D + I Q P+ R+++R
Sbjct: 416 SALIWTNKAIQKKDIEFLNDIKDLKIDQKTPL--RVLHR 452
>3cjh_A Mitochondrial import inner membrane translocase subunit TIM13;
cyclic heterohexamer, chaperone, metal-binding,
mitochondrion; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 28.5 bits (64), Expect = 6.5
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 173 SEIFFDQGECIPGGLPGSSEEG-------ERYIEIWNLVFMQFEQQNKQER 216
SE F++ C+ P ++ +Y+ WN++ + + +
Sbjct: 13 SENCFEK--CLTS--PYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 28.4 bits (62), Expect = 7.0
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 759 RVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---- 812
++E + E + V + K D H ++ + + +
Sbjct: 204 QIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFH 263
Query: 813 ---MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
+ L I+ +L + + ++ + ++L D + A K G GGG
Sbjct: 264 TKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGA---GKSSGSGGGD 320
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 28.4 bits (62), Expect = 7.8
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 26/114 (22%)
Query: 55 KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
KP + + R+G +DL+N G N +TF G +
Sbjct: 28 KPSFTVDQVADQLTRSGASWHDLNNDGVINLTYTFLT---APPVGYASRGLGT------- 77
Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLS---------ADKIIRITTNDN 159
+F Q+ + + + W ++ ++ D +
Sbjct: 78 FSQFSALQKEQA-------KLSLESWADVAKVTFTEGPAARGDDGHMTFANFSA 124
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 90
Score = 27.9 bits (62), Expect = 9.1
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 182 CIP----GGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
C+P E +Y++I + + + + Q+ ++ ++ +G
Sbjct: 33 CVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEELMKRVQQSSGPA 90
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A*
1qk4_A* 1qk5_A* 1dbr_A
Length = 233
Score = 28.0 bits (62), Expect = 9.5
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 225 DTGMGLERMATVLQEKTNNYDIDLF---KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
D G G R+ + Y+ D F H +++ ++ ++ D +
Sbjct: 11 DYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKI---------LLPGGLVKDRVEK 61
Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
+A I G + I++ + + LL
Sbjct: 62 ----LAYDIHRTYFGEELHIICILKGSRGFFNLL 91
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,712,573
Number of extensions: 378514
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 38
Length of query: 898
Length of database: 5,693,230
Length adjustment: 101
Effective length of query: 797
Effective length of database: 3,244,586
Effective search space: 2585935042
Effective search space used: 2585935042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)