>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 189 bits (482), Expect = 1e-48 Identities = 133/511 (26%), Positives = 252/511 (49%), Gaps = 19/511 (3%) Query: 18 MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77 + ++ + S ++ + +LG+R+ + + I + +L SFF++R GEI S Sbjct: 203 IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDA 262 Query: 78 TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR--KK 135 + I A+ +S+ L + + + ++ L L+ + + ++ +++I F R K Sbjct: 263 SSIIDALASTILSLFL-DMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNK 321 Query: 136 TNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEAIRLYDIQSQKTYKGFLRSALIRTCI 194 N +LN S +I+ + +++ + EA R I S+ + +L + Sbjct: 322 LNHDAMQANAVLN--SSIIEDLNGIETIKSLTSEAERYSKIDSE--FGDYLNKSFKYQKA 377 Query: 195 -----ACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIG 249 A + + + I++ GA+ V ++ G+L F F + + + Sbjct: 378 DQGQQAIKAVTKLILNVVILW-TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436 Query: 250 GISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNV 309 + A + RL E+ + + + RT + + G + VS+ Y S IL ++ Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINK-KKRTELNNLNGDIVINDVSYSYGYGSN--ILSDI 493 Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 + T++ +VG SG+GK+++ L++ F+ SG + + G L+ + +R+FI ++ Sbjct: 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 Query: 370 PQHPIMIAASVYDNIAIGC-PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428 PQ P + + S+ +N+ +G + ++ EI A +A+ + I + GY T L + +S Sbjct: 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488 GQ QRIA+ARA+L DS +L+LDE S LD E+KI L + +T IF +HRLS Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-KTIIFVAHRLSVA 672 Query: 489 QDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519 + +D + VL I+E+G H+ELL ++GFYA Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYA 703

RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01193