RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 75.0 bits (184), Expect = 5e-14
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 20/222 (9%)
Query: 278 RTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL 337
R P V G V P S R + +N T + A +G +GAGKT+ S++
Sbjct: 920 RELPGLVPGVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT 977
Query: 338 RFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRK-- 394
P SG+V + G D+ +L+ +R+ + PQH I+ +V ++I R
Sbjct: 978 GLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036
Query: 395 --EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
+++ AML + G + A LS G +++++A A + D+ +++LDE
Sbjct: 1037 EAQLEMEAMLE---------DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087
Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMV 494
S +D + + IW +L + R GRT I ++H + +AD++
Sbjct: 1088 PTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLL 1126