>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221

Score = 89.7 bits (223), Expect = 2e-18 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 32/225 (14%) Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 GK +LK V+ ++ GE +A+VG SG+GK+++ L+ +P SG V G L Sbjct: 12 QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK 71 Query: 357 LSLEEIRRF----IAWVPQ-HPIMIAASVYDNIA----IGCPHATRKEIQNAA--MLAQA 405 LS E + + ++ Q H ++ + +N+A IG + KE + A ML + Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKV 129 Query: 406 HEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461 L H LS G+ QR+AIARA++ ++L DE LD N Sbjct: 130 G-------------LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 Query: 462 EQKIWKVLREQRRGRTTIF--ASHRLSAIQDADMVFVLHDQVIVE 504 + I+ ++ E R T F +H L + D V + D + Sbjct: 177 AKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR02211