RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01271
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490
Score = 96.5 bits (240), Expect = 1e-20
Identities = 99/455 (21%), Positives = 202/455 (44%), Gaps = 39/455 (8%)
Query: 60 SFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVS 119
+ N+ G I + KD I ++ + + ++ L+ GA+ ++ V+ + + +
Sbjct: 974 AVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033
Query: 120 IVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEA---IRLYDI 175
+ +F+M+ F R + + IFS +I S+ L + A G+++ +
Sbjct: 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093
Query: 176 QSQKTYKGFLRSALIR----TCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231
+ T FL + +R FV FF++ FI + T + G++ +
Sbjct: 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV-TFIA-------IGTNQDGEGEVGIIL 1145
Query: 232 VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISS--RTFPSPVL---- 285
A ++++ + + + S+ R+ + I + P + S VL
Sbjct: 1146 TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIEN 1205
Query: 286 ----------GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL 335
G + + ++ Y ++ R++L++++F+V+ G+ + L+G +G+GK+++ S
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYT-EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 336 ILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TR 393
+LR G ++I+G+ ++L+ R+ +PQ + + + N+ P+ +
Sbjct: 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD---PYEQWSD 1320
Query: 394 KEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
+EI A I + D +L DG LS G Q + +AR+IL + ILLLDE
Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380
Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488
+ LD Q I K L++ T I + HR+ A+
Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415