RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01271

>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490
 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 99/455 (21%), Positives = 202/455 (44%), Gaps = 39/455 (8%)

Query: 60   SFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVS 119
            +  N+   G I +   KD   I  ++ + +   ++  L+  GA+ ++ V+   + +  + 
Sbjct: 974  AVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033

Query: 120  IVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEA---IRLYDI 175
            +  +F+M+   F R        + +    IFS +I S+  L +  A G+++      +  
Sbjct: 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093

Query: 176  QSQKTYKGFLRSALIR----TCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231
             +  T   FL  + +R         FV FF++   FI        + T +   G++   +
Sbjct: 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV-TFIA-------IGTNQDGEGEVGIIL 1145

Query: 232  VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISS--RTFPSPVL---- 285
              A    ++++  +     +   + S+ R+ + I    +   P     +   S VL    
Sbjct: 1146 TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIEN 1205

Query: 286  ----------GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL 335
                      G +  + ++  Y  ++ R++L++++F+V+ G+ + L+G +G+GK+++ S 
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYT-EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264

Query: 336  ILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TR 393
            +LR      G ++I+G+    ++L+  R+    +PQ   + + +   N+    P+   + 
Sbjct: 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD---PYEQWSD 1320

Query: 394  KEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
            +EI   A        I    +  D +L DG   LS G  Q + +AR+IL  + ILLLDE 
Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380

Query: 454  GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488
             + LD    Q I K L++     T I + HR+ A+
Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415