RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 218 bits (557), Expect = 3e-57
Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 4/264 (1%)
Query: 252 SQAIASLRRLRELIVCKLDISSPISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVN 310
QA +L+ L EL+ +L + P +R P L G + FR+VSF YPG + L NV+
Sbjct: 429 QQAKTALQSLDELM--QLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVS 485
Query: 311 FTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP 370
T++PGE +A++G G+GK+++ L+L Y P GSV ++G+D+R + ++RR I +VP
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545
Query: 371 QHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTG 430
Q P + ++ DNIA+G P+A +EI AA LA EF+ +G D +G+ LS G
Sbjct: 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605
Query: 431 QIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQD 490
Q Q +A+ARA+L+D PILLLDE SA+D +E++ L+ G+T + +HR S +
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL 665
Query: 491 ADMVFVLHDQVIVEKGVHEELLKK 514
D + V+ + IV G +++L+
Sbjct: 666 VDRIIVMDNGRIVADGPKDQVLEA 689